Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003454.1

Orthogroup ID

OG0013710

Physical Location & Seq

Genomic Coordinates Reverse (-)

103554 .. 104138

Gene Structure 585 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003454.1_g000024.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 585 bp

atgagaggtgaggcctttgtctctgcagtgaaacacatgaggtcttttgttccagccgtgtatgatgttacaatcgccttccctgaagctcgatcagattcacctcaaacactgttacaactcttctacgagaggctgaggcgacgaaagtcatatgtggtgcatgtgcatgttaagcggcatgagattaggggtttgcctcgtaaacatggtgcccttgagaaatggtgtgagggtgtgctggaggccaagcaagccttattggaccaacacagagcagaccaaacttttggtgaccaagtacaagtactagaaacatgctcaggtaaacgccggccactcaagcctcttttggttgttacctcttgggcacttgtatttgtattctcggcaatcaagttccccctcttatctttactagtgctactcattgcatcctcaggcctgacttactttctcaatcggggccgcttgtcttccctactgctgaatcttactatccttcttagacgtgcttttggttctcaagttgcatcacttctcctcattagtgcttcttatttcatttacttccttccttcttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003841 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0008374 GO:0012505 GO:0016411 GO:0016740 GO:0016746 GO:0016747 GO:0042171 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071617

KEGG Pathways

Metabolic & Signaling

ko00561 ko00564 ko01100 ko01110 ko04072 map00561 map00564 map01100 map01110 map04072

Pfam Domains

Protein Families

Acyltransf_C Acyltransferase

Protein Analysis

194

Amino Acids

22.04

Weight (kDa)

10.27

Isoelectric Point (pI)

47.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013710)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g09451
rosa_chinensis	RchiOBHm_Chr4g0396181
rosa_laevigata	RLG00000009560 RLG00000009562 RLG00000018346
rosa_multiflora	Rmu_sc0003454.1_g000024 Rmu_sc0003454.1_g000025 Rmu_sc0003454.1_g000027 Rmu_sc0004436.1_g000003 Rmu_sc0006325.1_g000043
rosa_roxburghii	Rroxscaffold_2G00126530
rosa_rugosa	Rorug02G0212500 Rorug03G0351000
rosa_samantha	Rh2AG267600 Rh2DG274700 Rh2DG294000 Rh4BG065500 Rh4CG072200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	212
AciI	CCGC	2 cut(s)	178, 469
AcoI	YGGCCR	1 cut(s)	335
AcuI	CTGAAG	1 cut(s)	105
AfaI	GTAC	2 cut(s)	303, 309
AhlI	ACTAGT	1 cut(s)	418
AjiI	CACGTC	1 cut(s)	512
AluBI	AGCT	1 cut(s)	89
AluI	AGCT	1 cut(s)	89
Alw26I	GTCTC	1 cut(s)	25
AoxI	GGCC	5 cut(s)	12, 246, 335, 442, 466
ArsI	GACNNNNNNTTYG	2 cut(s)	272, 304
AspS9I	GGNCC	2 cut(s)	265, 466
AsuHPI	GGTGA	3 cut(s)	20, 93, 305
AvaII	GGWCC	1 cut(s)	265
AxyI	CCTNAGG	1 cut(s)	439
BaeGI	GKGCMC	2 cut(s)	217, 373
BanI	GGYRCC	1 cut(s)	212
BbsI	GAAGAC	1 cut(s)	468
BbvCI	CCTCAGC	1 cut(s)	137
BceAI	ACGGC	1 cut(s)	41
BcoDI	GTCTC	1 cut(s)	25
BcuI	ACTAGT	1 cut(s)	418
BfaI	CTAG	2 cut(s)	311, 419
BfmI	CTRYAG	1 cut(s)	24
BisI	GCNGC	2 cut(s)	179, 469
BlsI	GCNGC	2 cut(s)	180, 470
BmcAI	AGTACT	1 cut(s)	309
Bme18I	GGWCC	1 cut(s)	265
BmgBI	CACGTC	1 cut(s)	512
BmgT120I	GGNCC	2 cut(s)	265, 466
BmiI	GGNNCC	2 cut(s)	214, 467
BmsI	GCATC	2 cut(s)	443, 542
BoxI	GACNNNNGTC	1 cut(s)	148
BpiI	GAAGAC	1 cut(s)	468
BpmI	CTGGAG	1 cut(s)	263
Bpu10I	CCTNAGC	2 cut(s)	137, 322
BpuEI	CTTGAG	3 cut(s)	239, 326, 510
Bse118I	RCCGGY	1 cut(s)	333
Bse21I	CCTNAGG	1 cut(s)	439
Bse3DI	GCAATG	1 cut(s)	429
BseGI	GGATG	1 cut(s)	434
BseMI	GCAATG	1 cut(s)	429
BseMII	CTCAG	3 cut(s)	128, 336, 453
BseRI	GAGGAG	1 cut(s)	533
BseSI	GKGCMC	2 cut(s)	217, 373
BshFI	GGCC	5 cut(s)	14, 248, 337, 444, 468
BshNI	GGYRCC	1 cut(s)	212
BsiSI	CCGG	1 cut(s)	334
BsmAI	GTCTC	1 cut(s)	25
BsnI	GGCC	5 cut(s)	14, 248, 337, 444, 468
Bsp1286I	GDGCHC	2 cut(s)	217, 373
Bsp143I	GATC	1 cut(s)	92
BspACI	CCGC	2 cut(s)	178, 469
BspANI	GGCC	5 cut(s)	14, 248, 337, 444, 468
BspCNI	CTCAG	3 cut(s)	129, 335, 452
BspLI	GGNNCC	2 cut(s)	214, 467
BspMAI	CTGCAG	1 cut(s)	28
BspT107I	GGYRCC	1 cut(s)	212
BsrDI	GCAATG	1 cut(s)	429
BsrFI	RCCGGY	1 cut(s)	333
BssAI	RCCGGY	1 cut(s)	333
BssMI	GATC	1 cut(s)	92
Bst4CI	ACNGT	1 cut(s)	114
Bst6I	CTCTTC	1 cut(s)	128
BstC8I	GCNNGC	2 cut(s)	255, 335
BstDEI	CTNAG	5 cut(s)	137, 322, 439, 506, 582
BstEII	GGTNACC	1 cut(s)	293
BstF5I	GGATG	1 cut(s)	434
BstKTI	GATC	1 cut(s)	95
BstMAI	GTCTC	1 cut(s)	25
BstMBI	GATC	1 cut(s)	92
BstMWI	GCNNNNNNNGC	3 cut(s)	175, 254, 343
BstNSI	RCATGY	3 cut(s)	167, 173, 321
BstPAI	GACNNNNGTC	1 cut(s)	148
BstPI	GGTNACC	1 cut(s)	293
BstSFI	CTRYAG	1 cut(s)	24
BstSLI	GKGCMC	2 cut(s)	217, 373
BstV2I	GAAGAC	1 cut(s)	468
BstXI	CCANNNNNNTGG	1 cut(s)	290
Bsu36I	CCTNAGG	1 cut(s)	439
BsuRI	GGCC	5 cut(s)	14, 248, 337, 444, 468
BtrI	CACGTC	1 cut(s)	512
BtsCI	GGATG	1 cut(s)	434
BtsI	GCAGTG	1 cut(s)	33
BtsIMutI	CAGTG	2 cut(s)	33, 110
Cac8I	GCNNGC	2 cut(s)	255, 335
Cfr10I	RCCGGY	1 cut(s)	333
Cfr13I	GGNCC	2 cut(s)	265, 466
Csp6I	GTAC	2 cut(s)	302, 308
CviAII	CATG	6 cut(s)	37, 164, 170, 182, 209, 318
CviQI	GTAC	2 cut(s)	302, 308
DdeI	CTNAG	5 cut(s)	137, 322, 439, 506, 582
DpnI	GATC	1 cut(s)	94
DpnII	GATC	1 cut(s)	92
EaeI	YGGCCR	1 cut(s)	335
Eam1104I	CTCTTC	1 cut(s)	128
EarI	CTCTTC	1 cut(s)	128
Eco147I	AGGCCT	2 cut(s)	14, 444
Eco47I	GGWCC	1 cut(s)	265
Eco57I	CTGAAG	1 cut(s)	105
Eco81I	CCTNAGG	1 cut(s)	439
Eco91I	GGTNACC	1 cut(s)	293
EcoO65I	GGTNACC	1 cut(s)	293
FaeI	CATG	6 cut(s)	40, 167, 173, 185, 212, 321
FaiI	YATR	9 cut(s)	38, 63, 154, 156, 165, 171, 183, 210, 319
FalI	AAGNNNNNCTT	2 cut(s)	242, 274
FatI	CATG	6 cut(s)	36, 163, 169, 181, 208, 317
FauNDI	CATATG	1 cut(s)	154
Fnu4HI	GCNGC	2 cut(s)	179, 469
FokI	GGATG	1 cut(s)	421
Fsp4HI	GCNGC	2 cut(s)	179, 469
FspBI	CTAG	2 cut(s)	311, 419
GluI	GCNGC	2 cut(s)	179, 469
GsuI	CTGGAG	1 cut(s)	263
HaeIII	GGCC	5 cut(s)	14, 248, 337, 444, 468
HapII	CCGG	1 cut(s)	334
Hin1II	CATG	6 cut(s)	40, 167, 173, 185, 212, 321
HinfI	GANTC	2 cut(s)	98, 490
HpaII	CCGG	1 cut(s)	334
HphI	GGTGA	3 cut(s)	20, 93, 305
Hpy166II	GTNNAC	2 cut(s)	206, 329
Hpy188I	TCNGA	1 cut(s)	97
Hpy8I	GTNNAC	2 cut(s)	206, 329
Hpy99I	CGWCG	1 cut(s)	147
HpyAV	CCTTC	3 cut(s)	88, 512, 584
HpyCH4III	ACNGT	1 cut(s)	114
HpyCH4IV	ACGT	1 cut(s)	511
HpyCH4V	TGCA	5 cut(s)	26, 163, 169, 434, 533
HpyF10VI	GCNNNNNNNGC	3 cut(s)	175, 254, 343
HpyF3I	CTNAG	5 cut(s)	137, 322, 439, 506, 582
HpySE526I	ACGT	1 cut(s)	511
Hsp92II	CATG	6 cut(s)	40, 167, 173, 185, 212, 321
KroI	GCCGGC	1 cut(s)	333
KroNI	GCCGGC	1 cut(s)	335
Kzo9I	GATC	1 cut(s)	92
LpnPI	CCDG	7 cut(s)	66, 96, 227, 309, 347, 426, 458
LweI	GCATC	2 cut(s)	443, 542
MaeI	CTAG	2 cut(s)	311, 419
MaeII	ACGT	1 cut(s)	511
MaeIII	GTNAC	4 cut(s)	67, 114, 293, 358
MalI	GATC	1 cut(s)	94
MboI	GATC	1 cut(s)	92
MboII	GAAGA	2 cut(s)	115, 468
MhlI	GDGCHC	2 cut(s)	217, 373
MroNI	GCCGGC	1 cut(s)	333
MseI	TTAA	1 cut(s)	174
MslI	CAYNNNNRTG	1 cut(s)	168
MspI	CCGG	1 cut(s)	334
MwoI	GCNNNNNNNGC	3 cut(s)	175, 254, 343
NaeI	GCCGGC	1 cut(s)	335
NdeI	CATATG	1 cut(s)	154
NdeII	GATC	1 cut(s)	92
NgoMIV	GCCGGC	1 cut(s)	333
NlaIII	CATG	6 cut(s)	40, 167, 173, 185, 212, 321
NlaIV	GGNNCC	2 cut(s)	214, 467
NmeAIII	GCCGAG	1 cut(s)	368
NmuCI	GTSAC	1 cut(s)	293
NspI	RCATGY	3 cut(s)	167, 173, 321
PceI	AGGCCT	2 cut(s)	14, 444
PdiI	GCCGGC	1 cut(s)	335
PfeI	GAWTC	2 cut(s)	98, 490
PkrI	GCNGC	2 cut(s)	180, 470
PshAI	GACNNNNGTC	1 cut(s)	148
PspEI	GGTNACC	1 cut(s)	293
PspN4I	GGNNCC	2 cut(s)	214, 467
PspPI	GGNCC	2 cut(s)	265, 466
PstI	CTGCAG	1 cut(s)	28
RsaI	GTAC	2 cut(s)	303, 309
RsaNI	GTAC	2 cut(s)	302, 308
RseI	CAYNNNNRTG	1 cut(s)	168
SaqAI	TTAA	1 cut(s)	174
SatI	GCNGC	2 cut(s)	179, 469
Sau3AI	GATC	1 cut(s)	92
Sau96I	GGNCC	2 cut(s)	265, 466
ScaI	AGTACT	1 cut(s)	309
SduI	GDGCHC	2 cut(s)	217, 373
SetI	ASST	7 cut(s)	10, 44, 91, 106, 328, 365, 514
SfaNI	GCATC	2 cut(s)	443, 542
SfcI	CTRYAG	1 cut(s)	24
SinI	GGWCC	1 cut(s)	265
SmiMI	CAYNNNNRTG	1 cut(s)	168
SmlI	CTYRAG	3 cut(s)	218, 341, 525
SmoI	CTYRAG	3 cut(s)	218, 341, 525
SpeI	ACTAGT	1 cut(s)	418
SseBI	AGGCCT	2 cut(s)	14, 444
SsiI	CCGC	2 cut(s)	178, 469
SspMI	CTAG	2 cut(s)	311, 419
StuI	AGGCCT	2 cut(s)	14, 444
TaaI	ACNGT	1 cut(s)	114
TaiI	ACGT	1 cut(s)	514
TaqI	TCGA	1 cut(s)	91
TatI	WGTACW	2 cut(s)	301, 307
TauI	GCSGC	2 cut(s)	181, 471
TfiI	GAWTC	2 cut(s)	98, 490
Tru1I	TTAA	1 cut(s)	174
Tru9I	TTAA	1 cut(s)	174
TscAI	CASTG	2 cut(s)	33, 117
TseFI	GTSAC	1 cut(s)	293
Tsp45I	GTSAC	1 cut(s)	293
TspDTI	ATGAA	1 cut(s)	553
TspRI	CASTG	2 cut(s)	33, 117
VpaK11BI	GGWCC	1 cut(s)	265
XceI	RCATGY	3 cut(s)	167, 173, 321
XspI	CTAG	2 cut(s)	311, 419
ZrmI	AGTACT	1 cut(s)	309

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.