Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0013710

Physical Location & Seq

Genomic Coordinates Forward (+)

54572065 .. 54573069

Gene Structure 1005 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000009560

Sequence Viewer

CDS Protein Promoter (2k)

Length: 909 bp

ATGGCTAATACTACATTGGCAGAGGCGAATATACACAGACGGATCAACCAAGTGGTGGCAAAATTGTTATGGCTGGAGGTGGTGTGGCTAGTCGATTGGTGGGCAGGTGTTAAGATCCAAGTACACACAGACGACCCAGAAGCGATGACCCGCTTCATGGGTAAAGAAAATGCTATTGTCATATCCAATTACACAACCGACATCGATCATATTCTTATGTCTGTTCTCGCTCACCGCTCTGGTTCCGTCGGCAAGGTGGTGAGCAGTAAATTGGTGAAATTCCTTCCTACCATTGGTTGGTCGCTGTGGTTTTCTGATAATATATTCCTGGAGAGAATCAATGGTTTGGGTCCAGACCAAGATACATCGGCTCTTTGTGGCCTCAAGGACTTCCCTCTCCCCATTTGGTTTTTTCCACGAGGAATAGGTAAGGAAAAGATGTCAACTGAGGTTTTTGTCTCTGCCGTGAAACGCATGCGGCCTTTTACTCCAGCCGTATATGATGTAACAATAGCTTGTAATTCGGATCAACCACCCTCATTGGCAAGACTACTCCTGAGGAAACGACCATCTTATGTGCATATGCACATTAAGCGGCACGACATAATCGATTTACCTAATGAAGATGATGCTGTTGGGCAATGGTGTGAGGATGCGTTTCTGGCCAAGCATGCCTTATTGGAACAACACAGAGCAGACCGAACTTTCAGTGACCACCAAGCACTACTAGAAAGCTGCTCTAAACCCCCGCCACTCTACTCCATTTGGGTTGTCACCTCCTGGGCACTCCTATTTACATTCTGTGCTCTCAAGTTCCCCCTCTGGTCTTTGCAAGTGCTACTTATTTCATCCTCTGGCTTGTTTTGGTATCTCAAGTTCCCCTTCCTGTCTTTACTACTTGTTGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003841 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0008374 GO:0012505 GO:0016411 GO:0016740 GO:0016746 GO:0016747 GO:0042171 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071617

KEGG Pathways

Metabolic & Signaling

ko00561 ko00564 ko01100 ko01110 ko04072 map00561 map00564 map01100 map01110 map04072

Pfam Domains

Protein Families

Acyltransf_C Acyltransferase

Protein Analysis

303

Amino Acids

34.45

Weight (kDa)

7.15

Isoelectric Point (pI)

45.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Acyltransferase	PF01553	51 - 146	8.9e-07	Acyltransferase
Acyltransf_C	PF16076	185 - 250	4.9e-14	Acyltransferase C-terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0013710)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g09451
rosa_chinensis	RchiOBHm_Chr4g0396181
rosa_laevigata	RLG00000009560 RLG00000009562 RLG00000018346
rosa_multiflora	Rmu_sc0003454.1_g000024 Rmu_sc0003454.1_g000025 Rmu_sc0003454.1_g000027 Rmu_sc0004436.1_g000003 Rmu_sc0006325.1_g000043
rosa_roxburghii	Rroxscaffold_2G00126530
rosa_rugosa	Rorug02G0212500 Rorug03G0351000
rosa_samantha	Rh2AG267600 Rh2DG274700 Rh2DG294000 Rh4BG065500 Rh4CG072200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	95
Acc36I	ACCTGC	1 cut(s)	95
AccB7I	CCANNNNNTGG	2 cut(s)	55, 297
AccBSI	CCGCTC	1 cut(s)	237
AciI	CCGC	5 cut(s)	151, 235, 478, 595, 749
AclWI	GGATC	3 cut(s)	50, 109, 534
AcoI	YGGCCR	1 cut(s)	663
AcsI	RAATTY	1 cut(s)	278
AfaI	GTAC	1 cut(s)	123
AfiI	CCNNNNNNNGG	4 cut(s)	55, 157, 293, 297
AjnI	CCWGG	2 cut(s)	327, 779
AluBI	AGCT	2 cut(s)	515, 735
AluI	AGCT	2 cut(s)	515, 735
Alw21I	GWGCWC	1 cut(s)	808
Alw26I	GTCTC	1 cut(s)	463
AlwI	GGATC	3 cut(s)	50, 109, 534
AoxI	GGCC	3 cut(s)	379, 479, 663
ApeKI	GCWGC	1 cut(s)	735
ApoI	RAATTY	1 cut(s)	278
AspS9I	GGNCC	1 cut(s)	350
AsuHPI	GGTGA	4 cut(s)	224, 271, 286, 766
AvaII	GGWCC	1 cut(s)	350
AxyI	CCTNAGG	1 cut(s)	557
BaeGI	GKGCMC	1 cut(s)	787
BalI	TGGCCA	1 cut(s)	665
BauI	CACGAG	1 cut(s)	417
Bbv12I	GWGCWC	1 cut(s)	808
BbvI	GCAGC	1 cut(s)	722
BccI	CCATC	1 cut(s)	577
BceAI	ACGGC	2 cut(s)	449, 479
BciT130I	CCWGG	2 cut(s)	329, 781
BcoDI	GTCTC	1 cut(s)	463
BfaI	CTAG	2 cut(s)	89, 728
BfuAI	ACCTGC	1 cut(s)	95
BisI	GCNGC	3 cut(s)	479, 596, 736
BlsI	GCNGC	3 cut(s)	480, 597, 737
Bme1390I	CCNGG	2 cut(s)	329, 781
Bme18I	GGWCC	1 cut(s)	350
BmgT120I	GGNCC	1 cut(s)	350
BmiI	GGNNCC	2 cut(s)	244, 351
BmrFI	CCNGG	2 cut(s)	329, 781
BmsI	GCATC	2 cut(s)	619, 643
BpmI	CTGGAG	3 cut(s)	95, 350, 474
BpuEI	CTTGAG	3 cut(s)	368, 794, 857
Bsa29I	ATCGAT	2 cut(s)	204, 609
BsaJI	CCNNGG	1 cut(s)	780
BsaXI	ACNNNNNCTCC	2 cut(s)	68, 98
Bsc4I	CCNNNNNNNGG	4 cut(s)	55, 157, 293, 297
Bse21I	CCTNAGG	1 cut(s)	557
Bse3DI	GCAATG	1 cut(s)	647
BseBI	CCWGG	2 cut(s)	329, 781
BseCI	ATCGAT	2 cut(s)	204, 609
BseDI	CCNNGG	1 cut(s)	780
BseGI	GGATG	2 cut(s)	658, 848
BseLI	CCNNNNNNNGG	4 cut(s)	55, 157, 293, 297
BseMI	GCAATG	1 cut(s)	647
BseMII	CTCAG	2 cut(s)	438, 548
BseSI	GKGCMC	1 cut(s)	787
BseXI	GCAGC	1 cut(s)	722
BshFI	GGCC	3 cut(s)	381, 481, 665
BshVI	ATCGAT	2 cut(s)	204, 609
BsiHKAI	GWGCWC	1 cut(s)	808
BslI	CCNNNNNNNGG	4 cut(s)	55, 157, 293, 297
BsmAI	GTCTC	1 cut(s)	463
BsnI	GGCC	3 cut(s)	381, 481, 665
Bsp1286I	GDGCHC	2 cut(s)	787, 808
Bsp143I	GATC	4 cut(s)	42, 114, 205, 526
BspACI	CCGC	5 cut(s)	151, 235, 478, 595, 749
BspANI	GGCC	3 cut(s)	381, 481, 665
BspCNI	CTCAG	2 cut(s)	439, 549
BspDI	ATCGAT	2 cut(s)	204, 609
BspLI	GGNNCC	2 cut(s)	244, 351
BspMI	ACCTGC	1 cut(s)	95
BspPI	GGATC	3 cut(s)	50, 109, 534
BsrBI	CCGCTC	1 cut(s)	237
BsrDI	GCAATG	1 cut(s)	647
BssECI	CCNNGG	1 cut(s)	780
BssMI	GATC	4 cut(s)	42, 114, 205, 526
BssSI	CACGAG	1 cut(s)	417
Bst2BI	CACGAG	1 cut(s)	417
Bst2UI	CCWGG	2 cut(s)	329, 781
BstC8I	GCNNGC	2 cut(s)	476, 672
BstDEI	CTNAG	2 cut(s)	447, 557
BstF5I	GGATG	2 cut(s)	658, 848
BstKTI	GATC	4 cut(s)	45, 117, 208, 529
BstMAI	GTCTC	1 cut(s)	463
BstMBI	GATC	4 cut(s)	42, 114, 205, 526
BstMWI	GCNNNNNNNGC	3 cut(s)	592, 662, 671
BstNI	CCWGG	2 cut(s)	329, 781
BstNSI	RCATGY	2 cut(s)	478, 674
BstSCI	CCNGG	2 cut(s)	327, 779
BstSLI	GKGCMC	1 cut(s)	787
BstV1I	GCAGC	1 cut(s)	722
BstX2I	RGATCY	1 cut(s)	114
BstYI	RGATCY	1 cut(s)	114
Bsu15I	ATCGAT	2 cut(s)	204, 609
Bsu36I	CCTNAGG	1 cut(s)	557
BsuRI	GGCC	3 cut(s)	381, 481, 665
BsuTUI	ATCGAT	2 cut(s)	204, 609
BtgZI	GCGATG	1 cut(s)	158
BtsCI	GGATG	2 cut(s)	658, 848
BtsIMutI	CAGTG	1 cut(s)	715
BveI	ACCTGC	1 cut(s)	95
Cac8I	GCNNGC	2 cut(s)	476, 672
Cfr13I	GGNCC	1 cut(s)	350
ClaI	ATCGAT	2 cut(s)	204, 609
Csp6I	GTAC	1 cut(s)	122
CspCI	CAANNNNNGTGG	2 cut(s)	522, 557
CviAII	CATG	3 cut(s)	157, 475, 671
CviQI	GTAC	1 cut(s)	122
DdeI	CTNAG	2 cut(s)	447, 557
DpnI	GATC	4 cut(s)	44, 116, 207, 528
DpnII	GATC	4 cut(s)	42, 114, 205, 526
EaeI	YGGCCR	1 cut(s)	663
Eco47I	GGWCC	1 cut(s)	350
Eco81I	CCTNAGG	1 cut(s)	557
EcoRII	CCWGG	2 cut(s)	327, 779
FaeI	CATG	3 cut(s)	160, 478, 674
FalI	AAGNNNNNCTT	6 cut(s)	659, 691, 825, 857, 866, 898
FatI	CATG	3 cut(s)	156, 474, 670
FauI	CCCGC	2 cut(s)	158, 756
FauNDI	CATATG	1 cut(s)	582
Fnu4HI	GCNGC	3 cut(s)	479, 596, 736
FokI	GGATG	2 cut(s)	665, 835
Fsp4HI	GCNGC	3 cut(s)	479, 596, 736
FspBI	CTAG	2 cut(s)	89, 728
GluI	GCNGC	3 cut(s)	479, 596, 736
GsuI	CTGGAG	3 cut(s)	95, 350, 474
HaeIII	GGCC	3 cut(s)	381, 481, 665
Hin1II	CATG	3 cut(s)	160, 478, 674
HincII	GTYRAC	1 cut(s)	444
HindII	GTYRAC	1 cut(s)	444
HinfI	GANTC	1 cut(s)	336
HphI	GGTGA	4 cut(s)	224, 271, 286, 766
Hpy166II	GTNNAC	2 cut(s)	124, 444
Hpy188I	TCNGA	2 cut(s)	316, 526
Hpy188III	TCNNGA	2 cut(s)	353, 556
Hpy8I	GTNNAC	2 cut(s)	124, 444
Hpy99I	CGWCG	1 cut(s)	251
HpyAV	CCTTC	2 cut(s)	293, 892
HpyCH4V	TGCA	3 cut(s)	580, 586, 832
HpyF10VI	GCNNNNNNNGC	3 cut(s)	592, 662, 671
HpyF3I	CTNAG	2 cut(s)	447, 557
Hsp92II	CATG	3 cut(s)	160, 478, 674
Kzo9I	GATC	4 cut(s)	42, 114, 205, 526
Lsp1109I	GCAGC	1 cut(s)	722
LweI	GCATC	2 cut(s)	619, 643
MaeI	CTAG	2 cut(s)	89, 728
MaeIII	GTNAC	3 cut(s)	505, 710, 772
MalI	GATC	4 cut(s)	44, 116, 207, 528
MbiI	CCGCTC	1 cut(s)	237
MboI	GATC	4 cut(s)	42, 114, 205, 526
MboII	GAAGA	1 cut(s)	635
MflI	RGATCY	1 cut(s)	114
MhlI	GDGCHC	2 cut(s)	787, 808
MlsI	TGGCCA	1 cut(s)	665
MluCI	AATT	5 cut(s)	62, 187, 269, 278, 520
MluNI	TGGCCA	1 cut(s)	665
Mox20I	TGGCCA	1 cut(s)	665
MscI	TGGCCA	1 cut(s)	665
MseI	TTAA	2 cut(s)	111, 591
Msp20I	TGGCCA	1 cut(s)	665
MspR9I	CCNGG	2 cut(s)	329, 781
MvaI	CCWGG	2 cut(s)	329, 781
MwoI	GCNNNNNNNGC	3 cut(s)	592, 662, 671
NdeI	CATATG	1 cut(s)	582
NdeII	GATC	4 cut(s)	42, 114, 205, 526
NlaIII	CATG	3 cut(s)	160, 478, 674
NlaIV	GGNNCC	2 cut(s)	244, 351
NmuCI	GTSAC	2 cut(s)	710, 772
NspI	RCATGY	2 cut(s)	478, 674
PaeI	GCATGC	2 cut(s)	478, 674
PaqCI	CACCTGC	1 cut(s)	95
PcsI	WCGNNNNNNNCGW	1 cut(s)	606
PfeI	GAWTC	1 cut(s)	336
PflMI	CCANNNNNTGG	2 cut(s)	55, 297
PfoI	TCCNGGA	1 cut(s)	327
PkrI	GCNGC	3 cut(s)	480, 597, 737
Psp6I	CCWGG	2 cut(s)	327, 779
PspGI	CCWGG	2 cut(s)	327, 779
PspN4I	GGNNCC	2 cut(s)	244, 351
PspPI	GGNCC	1 cut(s)	350
PsrI	GAACNNNNNNTAC	2 cut(s)	860, 892
PsuI	RGATCY	1 cut(s)	114
RsaI	GTAC	1 cut(s)	123
RsaNI	GTAC	1 cut(s)	122
SaqAI	TTAA	2 cut(s)	111, 591
SatI	GCNGC	3 cut(s)	479, 596, 736
Sau3AI	GATC	4 cut(s)	42, 114, 205, 526
Sau96I	GGNCC	1 cut(s)	350
ScrFI	CCNGG	2 cut(s)	329, 781
SduI	GDGCHC	2 cut(s)	787, 808
SetI	ASST	9 cut(s)	81, 109, 258, 430, 453, 517, 619, 737, 779
SfaNI	GCATC	2 cut(s)	619, 643
SinI	GGWCC	1 cut(s)	350
SmlI	CTYRAG	3 cut(s)	383, 809, 872
SmoI	CTYRAG	3 cut(s)	383, 809, 872
SphI	GCATGC	2 cut(s)	478, 674
Sse9I	AATT	5 cut(s)	62, 187, 269, 278, 520
SsiI	CCGC	5 cut(s)	151, 235, 478, 595, 749
SspMI	CTAG	2 cut(s)	89, 728
StyD4I	CCNGG	2 cut(s)	327, 779
TaqI	TCGA	3 cut(s)	93, 204, 609
TaqII	GACCGA	1 cut(s)	714
TasI	AATT	5 cut(s)	62, 187, 269, 278, 520
TatI	WGTACW	1 cut(s)	121
TauI	GCSGC	2 cut(s)	481, 598
TfiI	GAWTC	1 cut(s)	336
Tru1I	TTAA	2 cut(s)	111, 591
Tru9I	TTAA	2 cut(s)	111, 591
TscAI	CASTG	1 cut(s)	715
TseFI	GTSAC	2 cut(s)	710, 772
TseI	GCWGC	1 cut(s)	735
Tsp45I	GTSAC	2 cut(s)	710, 772
TspDTI	ATGAA	3 cut(s)	145, 636, 837
TspGWI	ACGGA	2 cut(s)	55, 235
TspRI	CASTG	1 cut(s)	715
Van91I	CCANNNNNTGG	2 cut(s)	55, 297
VpaK11BI	GGWCC	1 cut(s)	350
XapI	RAATTY	1 cut(s)	278
XceI	RCATGY	2 cut(s)	478, 674
XspI	CTAG	2 cut(s)	89, 728

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.