Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0013710

Physical Location & Seq

Genomic Coordinates Forward (+)

54601375 .. 54602541

Gene Structure 1167 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000009562

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1167 bp

ATGGCTAATACTACATTGGCAAAGGCGGTTAGTTTCTCGCTTCTCATCTTGTTCGTCATCTCGGGCTTTATAGTGAATCTAGTTCAAGCGATTTGTTTCGTTCTGATTCGGCCTCTATCCAAGAATATACACAGACGGATCAACCAAGTGGTGACAAAATTGTTATGGCTGGAGGTGGTGTGGCTAGTCGATTGGTGGGCAGGTGTTAAGATCCAAGTACACACAGACGACCCAGAAGCGATGACCCGCTTCATGGGTAAAGAAAATGCTATTGTCATATCCAATTACAGAACCCACATGGATTATATTTTTATGTCTGTTCTCGCTCACCGCTGTGGTTCCGTCGGCAAGGTGGTGAGCTGTAAATTGGTGAAATTCGTTCCTACCATTGGTTGGTGGATGTGGTTTTCTGATAATATATTCCTGGAGAGATTCAATGGTTTGGGTCCGGACCAAGATACATCGGCTCTTTGTGGCCTCAAGGACTTCCCTCTCCCCATTTGGTTGACTCTTTTGCCACGAGGAATAGGTAAGGAAAAGATGTCAACTGAGGTTTTTGTCTCTGCTGTGAAACGCATGCGGCCTTTTACTCCAGCCGTATATGATGTAACAATAGCTTGTAATTCGGATCAACCACCCTCATTGGACAGACTGCTTCTGAGGAAACGACCATCTTTTGTTGTGCATATGCATATTAAGCGGCACGACATAATCGATTTACCTAATGAAGATGATGCTGTTGGGCAATGGTGTGAGGATGCGTTTCTGGCCAAGCATGCCTTATTGGAACAACACAGAGCAGACCGAACTTTCGGCGACCACCAACCACTACTAGAAAGCTGCTCTAAACCCCCGCCACTCTACTCCATTTGGGTTGTCACCTCCTGGGCACTCCTATTTACCTTCTGTGCTCTCAAGTTCCCCCTCTGGTCTTTGCTAGTGCTACTTATTTCATCCTCTGGCTTGTTTTGGTTTCTCAAGTTCCCCTTCCTGTCTTTACTACTACTTAAGGCATCCTCGCGCTTGTTTTTGCTTTGCAACTTCCCCCTCTTGTCTTCAGCAGCGGGGCTTATTACATCCTCAGGCTGCTTCTACTTACTCTGGGATCTCGACTTTCCCAGTTGGTCATTAAGAGAATGGCTGGTTTATTTCTTAGGCTTGCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003841 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0008374 GO:0012505 GO:0016411 GO:0016740 GO:0016746 GO:0016747 GO:0042171 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071617

KEGG Pathways

Metabolic & Signaling

ko00561 ko00564 ko01100 ko01110 ko04072 map00561 map00564 map01100 map01110 map04072

Pfam Domains

Protein Families

Acyltransf_C Acyltransferase

Protein Analysis

389

Amino Acids

44.37

Weight (kDa)

8.76

Isoelectric Point (pI)

39.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Acyltransferase	PF01553	83 - 145	3.2e-07	Acyltransferase
Acyltransf_C	PF16076	219 - 283	3e-13	Acyltransferase C-terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013710)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g09451
rosa_chinensis	RchiOBHm_Chr4g0396181
rosa_laevigata	RLG00000009560 RLG00000009562 RLG00000018346
rosa_multiflora	Rmu_sc0003454.1_g000024 Rmu_sc0003454.1_g000025 Rmu_sc0003454.1_g000027 Rmu_sc0004436.1_g000003 Rmu_sc0006325.1_g000043
rosa_roxburghii	Rroxscaffold_2G00126530
rosa_rugosa	Rorug02G0212500 Rorug03G0351000
rosa_samantha	Rh2AG267600 Rh2DG274700 Rh2DG294000 Rh4BG065500 Rh4CG072200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	191
Acc36I	ACCTGC	1 cut(s)	191
AccB7I	CCANNNNNTGG	1 cut(s)	393
AccII	CGCG	1 cut(s)	1021
AccIII	TCCGGA	1 cut(s)	448
AciI	CCGC	7 cut(s)	26, 247, 331, 580, 700, 854, 1064
AclWI	GGATC	4 cut(s)	146, 205, 636, 1113
AcoI	YGGCCR	1 cut(s)	768
AcsI	RAATTY	1 cut(s)	374
AcuI	CTGAAG	1 cut(s)	1041
AfaI	GTAC	1 cut(s)	219
AfiI	CCNNNNNNNGG	3 cut(s)	253, 389, 393
AflII	CTTAAG	1 cut(s)	1007
AgsI	TTSAA	2 cut(s)	86, 436
AjnI	CCWGG	2 cut(s)	423, 884
AleI	CACNNNNGTG	1 cut(s)	333
AluBI	AGCT	3 cut(s)	360, 617, 840
AluI	AGCT	3 cut(s)	360, 617, 840
Alw21I	GWGCWC	1 cut(s)	913
Alw26I	GTCTC	1 cut(s)	565
AlwI	GGATC	4 cut(s)	146, 205, 636, 1113
Ama87I	CYCGRG	1 cut(s)	61
Aor13HI	TCCGGA	1 cut(s)	448
AoxI	GGCC	4 cut(s)	110, 475, 581, 768
ApeKI	GCWGC	3 cut(s)	840, 1061, 1086
ApoI	RAATTY	1 cut(s)	374
ArsI	GACNNNNNNTTYG	2 cut(s)	794, 826
AspLEI	GCGC	1 cut(s)	1023
AspS9I	GGNCC	2 cut(s)	446, 451
AsuHPI	GGTGA	5 cut(s)	163, 320, 367, 382, 871
AvaI	CYCGRG	1 cut(s)	61
AvaII	GGWCC	2 cut(s)	446, 451
AxyI	CCTNAGG	1 cut(s)	1081
BaeGI	GKGCMC	1 cut(s)	892
BalI	TGGCCA	1 cut(s)	770
BauI	CACGAG	1 cut(s)	519
BbsI	GAAGAC	1 cut(s)	1047
Bbv12I	GWGCWC	1 cut(s)	913
BbvI	GCAGC	3 cut(s)	827, 1073, 1073
BccI	CCATC	1 cut(s)	679
BceAI	ACGGC	1 cut(s)	581
BciT130I	CCWGG	2 cut(s)	425, 886
BcoDI	GTCTC	1 cut(s)	565
BfaI	CTAG	4 cut(s)	80, 185, 833, 938
BfrI	CTTAAG	1 cut(s)	1007
BfuAI	ACCTGC	1 cut(s)	191
BisI	GCNGC	5 cut(s)	581, 701, 841, 1062, 1087
BlsI	GCNGC	5 cut(s)	582, 702, 842, 1063, 1088
Bme1390I	CCNGG	2 cut(s)	425, 886
Bme18I	GGWCC	2 cut(s)	446, 451
BmeT110I	CYCGRG	1 cut(s)	61
BmgT120I	GGNCC	2 cut(s)	446, 451
BmiI	GGNNCC	2 cut(s)	340, 447
BmrFI	CCNGG	2 cut(s)	425, 886
BmrI	ACTGGG	1 cut(s)	1113
BmsI	GCATC	3 cut(s)	724, 748, 1022
BmuI	ACTGGG	1 cut(s)	1113
BpiI	GAAGAC	1 cut(s)	1047
BpmI	CTGGAG	3 cut(s)	191, 446, 576
BpuEI	CTTGAG	3 cut(s)	464, 899, 962
Bsa29I	ATCGAT	1 cut(s)	714
BsaJI	CCNNGG	1 cut(s)	885
BsaWI	WCCGGW	1 cut(s)	448
BsaXI	ACNNNNNCTCC	2 cut(s)	164, 194
Bsc4I	CCNNNNNNNGG	3 cut(s)	253, 389, 393
Bse1I	ACTGG	1 cut(s)	1119
Bse21I	CCTNAGG	1 cut(s)	1081
Bse3DI	GCAATG	1 cut(s)	752
BseAI	TCCGGA	1 cut(s)	448
BseBI	CCWGG	2 cut(s)	425, 886
BseCI	ATCGAT	1 cut(s)	714
BseDI	CCNNGG	1 cut(s)	885
BseGI	GGATG	5 cut(s)	405, 763, 953, 1013, 1076
BseLI	CCNNNNNNNGG	3 cut(s)	253, 389, 393
BseMI	GCAATG	1 cut(s)	752
BseMII	CTCAG	3 cut(s)	540, 650, 1095
BseNI	ACTGG	1 cut(s)	1119
BseSI	GKGCMC	1 cut(s)	892
BseXI	GCAGC	3 cut(s)	827, 1073, 1073
Bsh1236I	CGCG	1 cut(s)	1021
BshFI	GGCC	4 cut(s)	112, 477, 583, 770
BshVI	ATCGAT	1 cut(s)	714
BsiHKAI	GWGCWC	1 cut(s)	913
BsiHKCI	CYCGRG	1 cut(s)	61
BsiSI	CCGG	1 cut(s)	449
BslI	CCNNNNNNNGG	3 cut(s)	253, 389, 393
BsmAI	GTCTC	1 cut(s)	565
BsnI	GGCC	4 cut(s)	112, 477, 583, 770
BsoBI	CYCGRG	1 cut(s)	61
Bsp1286I	GDGCHC	2 cut(s)	892, 913
Bsp13I	TCCGGA	1 cut(s)	448
Bsp143I	GATC	4 cut(s)	138, 210, 628, 1105
BspACI	CCGC	7 cut(s)	26, 247, 331, 580, 700, 854, 1064
BspANI	GGCC	4 cut(s)	112, 477, 583, 770
BspCNI	CTCAG	3 cut(s)	541, 651, 1094
BspDI	ATCGAT	1 cut(s)	714
BspEI	TCCGGA	1 cut(s)	448
BspFNI	CGCG	1 cut(s)	1021
BspLI	GGNNCC	2 cut(s)	340, 447
BspMI	ACCTGC	1 cut(s)	191
BspPI	GGATC	4 cut(s)	146, 205, 636, 1113
BspTI	CTTAAG	1 cut(s)	1007
BsrDI	GCAATG	1 cut(s)	752
BsrI	ACTGG	1 cut(s)	1119
BssECI	CCNNGG	1 cut(s)	885
BssMI	GATC	4 cut(s)	138, 210, 628, 1105
BssSI	CACGAG	1 cut(s)	519
Bst2BI	CACGAG	1 cut(s)	519
Bst2UI	CCWGG	2 cut(s)	425, 886
BstAFI	CTTAAG	1 cut(s)	1007
BstC8I	GCNNGC	3 cut(s)	578, 777, 1160
BstDEI	CTNAG	4 cut(s)	549, 659, 1081, 1153
BstF5I	GGATG	5 cut(s)	405, 763, 953, 1013, 1076
BstFNI	CGCG	1 cut(s)	1021
BstHHI	GCGC	1 cut(s)	1023
BstKTI	GATC	4 cut(s)	141, 213, 631, 1108
BstMAI	GTCTC	1 cut(s)	565
BstMBI	GATC	4 cut(s)	138, 210, 628, 1105
BstMWI	GCNNNNNNNGC	3 cut(s)	697, 767, 776
BstNI	CCWGG	2 cut(s)	425, 886
BstNSI	RCATGY	2 cut(s)	580, 779
BstSCI	CCNGG	2 cut(s)	423, 884
BstSLI	GKGCMC	1 cut(s)	892
BstUI	CGCG	1 cut(s)	1021
BstV1I	GCAGC	3 cut(s)	827, 1073, 1073
BstV2I	GAAGAC	1 cut(s)	1047
BstX2I	RGATCY	2 cut(s)	210, 1105
BstYI	RGATCY	2 cut(s)	210, 1105
Bsu15I	ATCGAT	1 cut(s)	714
Bsu36I	CCTNAGG	1 cut(s)	1081
BsuRI	GGCC	4 cut(s)	112, 477, 583, 770
BsuTUI	ATCGAT	1 cut(s)	714
BtgZI	GCGATG	1 cut(s)	254
BtsCI	GGATG	5 cut(s)	405, 763, 953, 1013, 1076
BveI	ACCTGC	1 cut(s)	191
Cac8I	GCNNGC	3 cut(s)	578, 777, 1160
CfoI	GCGC	1 cut(s)	1023
Cfr13I	GGNCC	2 cut(s)	446, 451
ClaI	ATCGAT	1 cut(s)	714
Csp6I	GTAC	1 cut(s)	218
CspCI	CAANNNNNGTGG	2 cut(s)	624, 659
CviAII	CATG	4 cut(s)	253, 298, 577, 776
CviQI	GTAC	1 cut(s)	218
DdeI	CTNAG	4 cut(s)	549, 659, 1081, 1153
DpnI	GATC	4 cut(s)	140, 212, 630, 1107
DpnII	GATC	4 cut(s)	138, 210, 628, 1105
EaeI	YGGCCR	1 cut(s)	768
Eco47I	GGWCC	2 cut(s)	446, 451
Eco57I	CTGAAG	1 cut(s)	1041
Eco81I	CCTNAGG	1 cut(s)	1081
Eco88I	CYCGRG	1 cut(s)	61
EcoRII	CCWGG	2 cut(s)	423, 884
EcoT22I	ATGCAT	1 cut(s)	693
FaeI	CATG	4 cut(s)	256, 301, 580, 779
FalI	AAGNNNNNCTT	4 cut(s)	764, 796, 971, 1003
FatI	CATG	4 cut(s)	252, 297, 576, 775
FauI	CCCGC	3 cut(s)	254, 861, 1057
FauNDI	CATATG	1 cut(s)	687
Fnu4HI	GCNGC	5 cut(s)	581, 701, 841, 1062, 1087
FokI	GGATG	5 cut(s)	412, 770, 940, 1000, 1063
Fsp4HI	GCNGC	5 cut(s)	581, 701, 841, 1062, 1087
FspBI	CTAG	4 cut(s)	80, 185, 833, 938
GlaI	GCGC	1 cut(s)	1022
GluI	GCNGC	5 cut(s)	581, 701, 841, 1062, 1087
GsuI	CTGGAG	3 cut(s)	191, 446, 576
HaeIII	GGCC	4 cut(s)	112, 477, 583, 770
HapII	CCGG	1 cut(s)	449
HhaI	GCGC	1 cut(s)	1023
Hin1II	CATG	4 cut(s)	256, 301, 580, 779
Hin6I	GCGC	1 cut(s)	1021
HinP1I	GCGC	1 cut(s)	1021
HincII	GTYRAC	2 cut(s)	507, 546
HindII	GTYRAC	2 cut(s)	507, 546
HinfI	GANTC	4 cut(s)	76, 106, 432, 508
HpaII	CCGG	1 cut(s)	449
HphI	GGTGA	5 cut(s)	163, 320, 367, 382, 871
Hpy166II	GTNNAC	3 cut(s)	220, 507, 546
Hpy188I	TCNGA	4 cut(s)	105, 412, 628, 660
Hpy188III	TCNNGA	2 cut(s)	449, 1109
Hpy8I	GTNNAC	3 cut(s)	220, 507, 546
Hpy99I	CGWCG	1 cut(s)	347
HpyAV	CCTTC	2 cut(s)	913, 997
HpyCH4V	TGCA	3 cut(s)	685, 691, 1038
HpyF10VI	GCNNNNNNNGC	3 cut(s)	697, 767, 776
HpyF3I	CTNAG	4 cut(s)	549, 659, 1081, 1153
Hsp92II	CATG	4 cut(s)	256, 301, 580, 779
HspAI	GCGC	1 cut(s)	1021
Kpn2I	TCCGGA	1 cut(s)	448
Kzo9I	GATC	4 cut(s)	138, 210, 628, 1105
Lsp1109I	GCAGC	3 cut(s)	827, 1073, 1073
LweI	GCATC	3 cut(s)	724, 748, 1022
MaeI	CTAG	4 cut(s)	80, 185, 833, 938
MaeIII	GTNAC	3 cut(s)	151, 607, 877
MalI	GATC	4 cut(s)	140, 212, 630, 1107
MboI	GATC	4 cut(s)	138, 210, 628, 1105
MboII	GAAGA	2 cut(s)	740, 1047
MflI	RGATCY	2 cut(s)	210, 1105
MhlI	GDGCHC	2 cut(s)	892, 913
MlsI	TGGCCA	1 cut(s)	770
MluCI	AATT	5 cut(s)	158, 283, 365, 374, 622
MluNI	TGGCCA	1 cut(s)	770
MlyI	GAGTC	1 cut(s)	502
Mox20I	TGGCCA	1 cut(s)	770
Mph1103I	ATGCAT	1 cut(s)	693
MroI	TCCGGA	1 cut(s)	448
MscI	TGGCCA	1 cut(s)	770
MseI	TTAA	4 cut(s)	207, 696, 1008, 1130
MslI	CAYNNNNRTG	1 cut(s)	333
Msp20I	TGGCCA	1 cut(s)	770
MspA1I	CMGCKG	2 cut(s)	333, 1064
MspCI	CTTAAG	1 cut(s)	1007
MspI	CCGG	1 cut(s)	449
MspR9I	CCNGG	2 cut(s)	425, 886
MvaI	CCWGG	2 cut(s)	425, 886
MvnI	CGCG	1 cut(s)	1021
MwoI	GCNNNNNNNGC	3 cut(s)	697, 767, 776
NdeI	CATATG	1 cut(s)	687
NdeII	GATC	4 cut(s)	138, 210, 628, 1105
NlaIII	CATG	4 cut(s)	256, 301, 580, 779
NlaIV	GGNNCC	2 cut(s)	340, 447
NmuCI	GTSAC	2 cut(s)	151, 877
NsiI	ATGCAT	1 cut(s)	693
NspI	RCATGY	2 cut(s)	580, 779
OliI	CACNNNNGTG	1 cut(s)	333
PaeI	GCATGC	2 cut(s)	580, 779
PaqCI	CACCTGC	1 cut(s)	191
PcsI	WCGNNNNNNNCGW	1 cut(s)	711
PfeI	GAWTC	3 cut(s)	76, 106, 432
PflMI	CCANNNNNTGG	1 cut(s)	393
PfoI	TCCNGGA	1 cut(s)	423
PkrI	GCNGC	5 cut(s)	582, 702, 842, 1063, 1088
PleI	GAGTC	1 cut(s)	502
PpsI	GAGTC	1 cut(s)	502
Psp6I	CCWGG	2 cut(s)	423, 884
PspGI	CCWGG	2 cut(s)	423, 884
PspN4I	GGNNCC	2 cut(s)	340, 447
PspPI	GGNCC	2 cut(s)	446, 451
PsuI	RGATCY	2 cut(s)	210, 1105
RsaI	GTAC	1 cut(s)	219
RsaNI	GTAC	1 cut(s)	218
RseI	CAYNNNNRTG	1 cut(s)	333
SaqAI	TTAA	4 cut(s)	207, 696, 1008, 1130
SatI	GCNGC	5 cut(s)	581, 701, 841, 1062, 1087
Sau3AI	GATC	4 cut(s)	138, 210, 628, 1105
Sau96I	GGNCC	2 cut(s)	446, 451
SchI	GAGTC	1 cut(s)	502
ScrFI	CCNGG	2 cut(s)	425, 886
SduI	GDGCHC	2 cut(s)	892, 913
SfaNI	GCATC	3 cut(s)	724, 748, 1022
SinI	GGWCC	2 cut(s)	446, 451
SmiMI	CAYNNNNRTG	1 cut(s)	333
SmlI	CTYRAG	4 cut(s)	479, 914, 977, 1007
SmoI	CTYRAG	4 cut(s)	479, 914, 977, 1007
SphI	GCATGC	2 cut(s)	580, 779
Sse9I	AATT	5 cut(s)	158, 283, 365, 374, 622
SsiI	CCGC	7 cut(s)	26, 247, 331, 580, 700, 854, 1064
SspMI	CTAG	4 cut(s)	80, 185, 833, 938
StyD4I	CCNGG	2 cut(s)	423, 884
TaqI	TCGA	3 cut(s)	189, 714, 1110
TaqII	GACCGA	1 cut(s)	819
TasI	AATT	5 cut(s)	158, 283, 365, 374, 622
TatI	WGTACW	1 cut(s)	217
TauI	GCSGC	2 cut(s)	583, 703
TfiI	GAWTC	3 cut(s)	76, 106, 432
Tru1I	TTAA	4 cut(s)	207, 696, 1008, 1130
Tru9I	TTAA	4 cut(s)	207, 696, 1008, 1130
TseFI	GTSAC	2 cut(s)	151, 877
TseI	GCWGC	3 cut(s)	840, 1061, 1086
Tsp45I	GTSAC	2 cut(s)	151, 877
TspDTI	ATGAA	3 cut(s)	241, 741, 942
TspGWI	ACGGA	2 cut(s)	151, 331
Van91I	CCANNNNNTGG	1 cut(s)	393
Vha464I	CTTAAG	1 cut(s)	1007
VpaK11BI	GGWCC	2 cut(s)	446, 451
XapI	RAATTY	1 cut(s)	374
XceI	RCATGY	2 cut(s)	580, 779
XspI	CTAG	4 cut(s)	80, 185, 833, 938
Zsp2I	ATGCAT	1 cut(s)	693

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.