Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006325.1

Orthogroup ID

OG0013710

Physical Location & Seq

Genomic Coordinates Reverse (-)

164138 .. 165304

Gene Structure 1167 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006325.1_g000043.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1167 bp

atggctaatactacattggcagaggcggttagtttctcgtttctcatcttgttcgtcatctcgggctttatagtgaatctagttcaagcgatttgtttcgttctgattcggcctctatccaagaatatacacagacggatcaaccaagtggtgacaaaattgttatggctggaggtggtgtggctagtcgattggtgggcaggtgttaagatccaagtacacacagacgacccagaagcgatgacccgcttcatgggtaaagaaaatgctattgtcatatccaattacataacccacatcgatcatactcttatgtctgttctcgctcaccgctgtggttccgtcggcaaggtggtgagcagtaaattggtgaaattcgttccttccattggttggtggatgtggttttctgataatatattcctggagagaatcaatggtttgggtccagaccaagatacatcggctctttgtggcctcaaggacttccctctccccatttggttgaatctttttccacgaggaataggtaaggaaaagatgtcaactgaggtttttgtctctaccgtgaaacgcatgcggccttttactccagccgtatatgatgtaacaatagcttgtaattcggatcaaccatcctcattggcaagactactcctgaggaaacgaccatcttatgttgtgcatatgcacattaagcggcacgacataatcgatttacctaatgaagatgatgctgttgggcaatggtgtgaggatgtgtttctggccaagcatgccttattggaacaacacagagcagaccaaactttcggcgaccaccaaacacagctagaaagctgctctaaacccccgccactcgactccatttgggttgtcacctcctgggcactcctatttacattctgtgctctcaagttcaccctctggtctttgctagtgctacttatttcatcctctggcttgttttggtttctcaagttccccttcctgtctttactactacttgaggcatcctcgcgcttgtttttgctttgcaacttccccctcttgtcttcagcagcgacgcttattacatcctcaggctgcatgtacttactcttgcatcacaacttccccatttggtcattacgaggatggctaatttatttcttaggcttgatttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003841 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0008374 GO:0012505 GO:0016411 GO:0016740 GO:0016746 GO:0016747 GO:0042171 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071617

KEGG Pathways

Metabolic & Signaling

ko00561 ko00564 ko01100 ko01110 ko04072 map00561 map00564 map01100 map01110 map04072

Pfam Domains

Protein Families

Acyltransf_C Acyltransferase

Protein Analysis

388

Amino Acids

44.19

Weight (kDa)

8.34

Isoelectric Point (pI)

41.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013710)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g09451
rosa_chinensis	RchiOBHm_Chr4g0396181
rosa_laevigata	RLG00000009560 RLG00000009562 RLG00000018346
rosa_multiflora	Rmu_sc0003454.1_g000024 Rmu_sc0003454.1_g000025 Rmu_sc0003454.1_g000027 Rmu_sc0004436.1_g000003 Rmu_sc0006325.1_g000043
rosa_roxburghii	Rroxscaffold_2G00126530
rosa_rugosa	Rorug02G0212500 Rorug03G0351000
rosa_samantha	Rh2AG267600 Rh2DG274700 Rh2DG294000 Rh4BG065500 Rh4CG072200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	191
Acc36I	ACCTGC	1 cut(s)	191
AccB7I	CCANNNNNTGG	1 cut(s)	393
AccII	CGCG	1 cut(s)	1021
AciI	CCGC	6 cut(s)	26, 247, 331, 580, 700, 854
AclWI	GGATC	3 cut(s)	146, 205, 636
AcoI	YGGCCR	1 cut(s)	768
AcsI	RAATTY	1 cut(s)	374
AcuI	CTGAAG	1 cut(s)	1041
AfaI	GTAC	2 cut(s)	219, 1094
AfiI	CCNNNNNNNGG	3 cut(s)	253, 389, 393
AgsI	TTSAA	2 cut(s)	86, 508
AjnI	CCWGG	2 cut(s)	423, 884
AleI	CACNNNNGTG	1 cut(s)	333
AluBI	AGCT	3 cut(s)	617, 832, 840
AluI	AGCT	3 cut(s)	617, 832, 840
Alw21I	GWGCWC	1 cut(s)	913
Alw26I	GTCTC	1 cut(s)	565
AlwI	GGATC	3 cut(s)	146, 205, 636
Ama87I	CYCGRG	1 cut(s)	61
AoxI	GGCC	4 cut(s)	110, 475, 581, 768
ApeKI	GCWGC	3 cut(s)	840, 1061, 1086
ApoI	RAATTY	1 cut(s)	374
ArsI	GACNNNNNNTTYG	2 cut(s)	794, 826
AspLEI	GCGC	1 cut(s)	1023
AspS9I	GGNCC	1 cut(s)	446
AsuHPI	GGTGA	6 cut(s)	163, 320, 367, 382, 871, 913
AvaI	CYCGRG	1 cut(s)	61
AvaII	GGWCC	1 cut(s)	446
AxyI	CCTNAGG	2 cut(s)	659, 1081
BaeGI	GKGCMC	1 cut(s)	892
BalI	TGGCCA	1 cut(s)	770
BauI	CACGAG	1 cut(s)	519
BbsI	GAAGAC	1 cut(s)	1047
Bbv12I	GWGCWC	1 cut(s)	913
BbvI	GCAGC	3 cut(s)	827, 1073, 1073
BccI	CCATC	3 cut(s)	643, 679, 1131
BceAI	ACGGC	1 cut(s)	581
BciT130I	CCWGG	2 cut(s)	425, 886
BcoDI	GTCTC	1 cut(s)	565
BfaI	CTAG	4 cut(s)	80, 185, 833, 938
BfuAI	ACCTGC	1 cut(s)	191
BisI	GCNGC	5 cut(s)	581, 701, 841, 1062, 1087
BlsI	GCNGC	5 cut(s)	582, 702, 842, 1063, 1088
Bme1390I	CCNGG	2 cut(s)	425, 886
Bme18I	GGWCC	1 cut(s)	446
BmeT110I	CYCGRG	1 cut(s)	61
BmgT120I	GGNCC	1 cut(s)	446
BmiI	GGNNCC	2 cut(s)	340, 447
BmrFI	CCNGG	2 cut(s)	425, 886
BmsI	GCATC	3 cut(s)	724, 1022, 1114
BpiI	GAAGAC	1 cut(s)	1047
BplI	GAGNNNNNCTC	2 cut(s)	1001, 1033
BpmI	CTGGAG	3 cut(s)	191, 446, 576
BpuEI	CTTGAG	4 cut(s)	464, 899, 962, 1028
Bsa29I	ATCGAT	2 cut(s)	300, 714
BsaJI	CCNNGG	1 cut(s)	885
BsaXI	ACNNNNNCTCC	2 cut(s)	164, 194
Bsc4I	CCNNNNNNNGG	3 cut(s)	253, 389, 393
Bse21I	CCTNAGG	2 cut(s)	659, 1081
Bse3DI	GCAATG	1 cut(s)	752
BseBI	CCWGG	2 cut(s)	425, 886
BseCI	ATCGAT	2 cut(s)	300, 714
BseDI	CCNNGG	1 cut(s)	885
BseGI	GGATG	7 cut(s)	405, 635, 763, 953, 1013, 1076, 1142
BseLI	CCNNNNNNNGG	3 cut(s)	253, 389, 393
BseMI	GCAATG	1 cut(s)	752
BseMII	CTCAG	3 cut(s)	540, 650, 1095
BseSI	GKGCMC	1 cut(s)	892
BseXI	GCAGC	3 cut(s)	827, 1073, 1073
Bsh1236I	CGCG	1 cut(s)	1021
BshFI	GGCC	4 cut(s)	112, 477, 583, 770
BshVI	ATCGAT	2 cut(s)	300, 714
BsiHKAI	GWGCWC	1 cut(s)	913
BsiHKCI	CYCGRG	1 cut(s)	61
BslI	CCNNNNNNNGG	3 cut(s)	253, 389, 393
BsmAI	GTCTC	1 cut(s)	565
BsnI	GGCC	4 cut(s)	112, 477, 583, 770
BsoBI	CYCGRG	1 cut(s)	61
Bsp1286I	GDGCHC	2 cut(s)	892, 913
Bsp143I	GATC	4 cut(s)	138, 210, 301, 628
BspACI	CCGC	6 cut(s)	26, 247, 331, 580, 700, 854
BspANI	GGCC	4 cut(s)	112, 477, 583, 770
BspCNI	CTCAG	3 cut(s)	541, 651, 1094
BspDI	ATCGAT	2 cut(s)	300, 714
BspFNI	CGCG	1 cut(s)	1021
BspLI	GGNNCC	2 cut(s)	340, 447
BspMI	ACCTGC	1 cut(s)	191
BspPI	GGATC	3 cut(s)	146, 205, 636
BsrDI	GCAATG	1 cut(s)	752
BssECI	CCNNGG	1 cut(s)	885
BssMI	GATC	4 cut(s)	138, 210, 301, 628
BssSI	CACGAG	1 cut(s)	519
Bst2BI	CACGAG	1 cut(s)	519
Bst2UI	CCWGG	2 cut(s)	425, 886
Bst4CI	ACNGT	1 cut(s)	568
BstC8I	GCNNGC	2 cut(s)	578, 777
BstDEI	CTNAG	4 cut(s)	549, 659, 1081, 1153
BstF5I	GGATG	7 cut(s)	405, 635, 763, 953, 1013, 1076, 1142
BstFNI	CGCG	1 cut(s)	1021
BstHHI	GCGC	1 cut(s)	1023
BstKTI	GATC	4 cut(s)	141, 213, 304, 631
BstMAI	GTCTC	1 cut(s)	565
BstMBI	GATC	4 cut(s)	138, 210, 301, 628
BstMWI	GCNNNNNNNGC	2 cut(s)	697, 776
BstNI	CCWGG	2 cut(s)	425, 886
BstNSI	RCATGY	3 cut(s)	580, 779, 1093
BstSCI	CCNGG	2 cut(s)	423, 884
BstSLI	GKGCMC	1 cut(s)	892
BstUI	CGCG	1 cut(s)	1021
BstV1I	GCAGC	3 cut(s)	827, 1073, 1073
BstV2I	GAAGAC	1 cut(s)	1047
BstX2I	RGATCY	1 cut(s)	210
BstYI	RGATCY	1 cut(s)	210
Bsu15I	ATCGAT	2 cut(s)	300, 714
Bsu36I	CCTNAGG	2 cut(s)	659, 1081
BsuRI	GGCC	4 cut(s)	112, 477, 583, 770
BsuTUI	ATCGAT	2 cut(s)	300, 714
BtgZI	GCGATG	1 cut(s)	254
BtsCI	GGATG	7 cut(s)	405, 635, 763, 953, 1013, 1076, 1142
BveI	ACCTGC	1 cut(s)	191
Cac8I	GCNNGC	2 cut(s)	578, 777
CfoI	GCGC	1 cut(s)	1023
Cfr13I	GGNCC	1 cut(s)	446
ClaI	ATCGAT	2 cut(s)	300, 714
CseI	GACGC	1 cut(s)	1075
Csp6I	GTAC	2 cut(s)	218, 1093
CviAII	CATG	4 cut(s)	253, 577, 776, 1090
CviQI	GTAC	2 cut(s)	218, 1093
DdeI	CTNAG	4 cut(s)	549, 659, 1081, 1153
DpnI	GATC	4 cut(s)	140, 212, 303, 630
DpnII	GATC	4 cut(s)	138, 210, 301, 628
EaeI	YGGCCR	1 cut(s)	768
Eco47I	GGWCC	1 cut(s)	446
Eco57I	CTGAAG	1 cut(s)	1041
Eco81I	CCTNAGG	2 cut(s)	659, 1081
Eco88I	CYCGRG	1 cut(s)	61
EcoRII	CCWGG	2 cut(s)	423, 884
FaeI	CATG	4 cut(s)	256, 580, 779, 1093
FalI	AAGNNNNNCTT	4 cut(s)	764, 796, 971, 1003
FatI	CATG	4 cut(s)	252, 576, 775, 1089
FauI	CCCGC	2 cut(s)	254, 861
FauNDI	CATATG	1 cut(s)	687
Fnu4HI	GCNGC	5 cut(s)	581, 701, 841, 1062, 1087
FokI	GGATG	7 cut(s)	412, 622, 770, 940, 1000, 1063, 1149
Fsp4HI	GCNGC	5 cut(s)	581, 701, 841, 1062, 1087
FspBI	CTAG	4 cut(s)	80, 185, 833, 938
GlaI	GCGC	1 cut(s)	1022
GluI	GCNGC	5 cut(s)	581, 701, 841, 1062, 1087
GsuI	CTGGAG	3 cut(s)	191, 446, 576
HaeIII	GGCC	4 cut(s)	112, 477, 583, 770
HgaI	GACGC	1 cut(s)	1075
HhaI	GCGC	1 cut(s)	1023
Hin1II	CATG	4 cut(s)	256, 580, 779, 1093
Hin6I	GCGC	1 cut(s)	1021
HinP1I	GCGC	1 cut(s)	1021
HincII	GTYRAC	1 cut(s)	546
HindII	GTYRAC	1 cut(s)	546
HinfI	GANTC	5 cut(s)	76, 106, 432, 508, 863
HphI	GGTGA	6 cut(s)	163, 320, 367, 382, 871, 913
Hpy166II	GTNNAC	3 cut(s)	220, 546, 921
Hpy188I	TCNGA	3 cut(s)	105, 412, 628
Hpy188III	TCNNGA	2 cut(s)	449, 658
Hpy8I	GTNNAC	3 cut(s)	220, 546, 921
Hpy99I	CGWCG	2 cut(s)	347, 1069
HpyAV	CCTTC	2 cut(s)	393, 997
HpyCH4III	ACNGT	1 cut(s)	568
HpyCH4V	TGCA	5 cut(s)	685, 691, 1038, 1089, 1105
HpyF10VI	GCNNNNNNNGC	2 cut(s)	697, 776
HpyF3I	CTNAG	4 cut(s)	549, 659, 1081, 1153
Hsp92II	CATG	4 cut(s)	256, 580, 779, 1093
HspAI	GCGC	1 cut(s)	1021
Kzo9I	GATC	4 cut(s)	138, 210, 301, 628
Lsp1109I	GCAGC	3 cut(s)	827, 1073, 1073
LweI	GCATC	3 cut(s)	724, 1022, 1114
MaeI	CTAG	4 cut(s)	80, 185, 833, 938
MaeIII	GTNAC	3 cut(s)	151, 607, 877
MalI	GATC	4 cut(s)	140, 212, 303, 630
MboI	GATC	4 cut(s)	138, 210, 301, 628
MboII	GAAGA	2 cut(s)	740, 1047
MflI	RGATCY	1 cut(s)	210
MhlI	GDGCHC	2 cut(s)	892, 913
MlsI	TGGCCA	1 cut(s)	770
MluCI	AATT	6 cut(s)	158, 283, 365, 374, 622, 1143
MluNI	TGGCCA	1 cut(s)	770
MlyI	GAGTC	1 cut(s)	857
Mox20I	TGGCCA	1 cut(s)	770
MscI	TGGCCA	1 cut(s)	770
MseI	TTAA	2 cut(s)	207, 696
MslI	CAYNNNNRTG	1 cut(s)	333
Msp20I	TGGCCA	1 cut(s)	770
MspA1I	CMGCKG	1 cut(s)	333
MspR9I	CCNGG	2 cut(s)	425, 886
MvaI	CCWGG	2 cut(s)	425, 886
MvnI	CGCG	1 cut(s)	1021
MwoI	GCNNNNNNNGC	2 cut(s)	697, 776
NdeI	CATATG	1 cut(s)	687
NdeII	GATC	4 cut(s)	138, 210, 301, 628
NlaIII	CATG	4 cut(s)	256, 580, 779, 1093
NlaIV	GGNNCC	2 cut(s)	340, 447
NmuCI	GTSAC	2 cut(s)	151, 877
NspI	RCATGY	3 cut(s)	580, 779, 1093
OliI	CACNNNNGTG	1 cut(s)	333
PaeI	GCATGC	2 cut(s)	580, 779
PaqCI	CACCTGC	1 cut(s)	191
PcsI	WCGNNNNNNNCGW	1 cut(s)	711
PfeI	GAWTC	4 cut(s)	76, 106, 432, 508
PflMI	CCANNNNNTGG	1 cut(s)	393
PfoI	TCCNGGA	1 cut(s)	423
PkrI	GCNGC	5 cut(s)	582, 702, 842, 1063, 1088
PleI	GAGTC	1 cut(s)	857
PpsI	GAGTC	1 cut(s)	857
Psp6I	CCWGG	2 cut(s)	423, 884
PspGI	CCWGG	2 cut(s)	423, 884
PspN4I	GGNNCC	2 cut(s)	340, 447
PspPI	GGNCC	1 cut(s)	446
PsuI	RGATCY	1 cut(s)	210
RsaI	GTAC	2 cut(s)	219, 1094
RsaNI	GTAC	2 cut(s)	218, 1093
RseI	CAYNNNNRTG	1 cut(s)	333
SaqAI	TTAA	2 cut(s)	207, 696
SatI	GCNGC	5 cut(s)	581, 701, 841, 1062, 1087
Sau3AI	GATC	4 cut(s)	138, 210, 301, 628
Sau96I	GGNCC	1 cut(s)	446
SchI	GAGTC	1 cut(s)	857
ScrFI	CCNGG	2 cut(s)	425, 886
SduI	GDGCHC	2 cut(s)	892, 913
SfaNI	GCATC	3 cut(s)	724, 1022, 1114
SinI	GGWCC	1 cut(s)	446
SmiMI	CAYNNNNRTG	1 cut(s)	333
SmlI	CTYRAG	4 cut(s)	479, 914, 977, 1007
SmoI	CTYRAG	4 cut(s)	479, 914, 977, 1007
SphI	GCATGC	2 cut(s)	580, 779
Sse9I	AATT	6 cut(s)	158, 283, 365, 374, 622, 1143
SsiI	CCGC	6 cut(s)	26, 247, 331, 580, 700, 854
SspMI	CTAG	4 cut(s)	80, 185, 833, 938
StyD4I	CCNGG	2 cut(s)	423, 884
TaaI	ACNGT	1 cut(s)	568
TaqI	TCGA	4 cut(s)	189, 300, 714, 861
TasI	AATT	6 cut(s)	158, 283, 365, 374, 622, 1143
TatI	WGTACW	2 cut(s)	217, 1092
TauI	GCSGC	2 cut(s)	583, 703
TfiI	GAWTC	4 cut(s)	76, 106, 432, 508
Tru1I	TTAA	2 cut(s)	207, 696
Tru9I	TTAA	2 cut(s)	207, 696
TseFI	GTSAC	2 cut(s)	151, 877
TseI	GCWGC	3 cut(s)	840, 1061, 1086
Tsp45I	GTSAC	2 cut(s)	151, 877
TspDTI	ATGAA	3 cut(s)	241, 741, 942
TspGWI	ACGGA	2 cut(s)	151, 331
Van91I	CCANNNNNTGG	1 cut(s)	393
VpaK11BI	GGWCC	1 cut(s)	446
XapI	RAATTY	1 cut(s)	374
XceI	RCATGY	3 cut(s)	580, 779, 1093
XspI	CTAG	4 cut(s)	80, 185, 833, 938

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.