Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003454.1

Orthogroup ID

OG0013710

Physical Location & Seq

Genomic Coordinates Reverse (-)

104275 .. 104661

Gene Structure 387 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003454.1_g000025.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 387 bp

atgccatgcaaaatatctccaccaaggagggataggcaccaaacccaacacattcaagccattttcttcgtcctgattcggcctttatctaagaatatatacagaaggataaacggagtagtggcagaattgttatggctggagggggtgtggctcgtgggggggggggcagggcttgagattcaagtacacacagacaatgacccccaaacaatgaccggcgtgatgggtaaagaaaatgccattgtcatatctaattacggaactgatatcaatttcattccggtcctagctcagcgctctggttgcctctgcagctcattatttagtgttgacgataaattcagcaagttccttcctgtcattgggcgatatgtggttctctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003841 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0008374 GO:0012505 GO:0016411 GO:0016740 GO:0016746 GO:0016747 GO:0042171 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071617

KEGG Pathways

Metabolic & Signaling

ko00561 ko00564 ko01100 ko01110 ko04072 map00561 map00564 map01100 map01110 map04072

Pfam Domains

Protein Families

Acyltransf_C Acyltransferase

Protein Analysis

128

Amino Acids

14.3

Weight (kDa)

8.93

Isoelectric Point (pI)

41.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013710)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g09451
rosa_chinensis	RchiOBHm_Chr4g0396181
rosa_laevigata	RLG00000009560 RLG00000009562 RLG00000018346
rosa_multiflora	Rmu_sc0003454.1_g000024 Rmu_sc0003454.1_g000025 Rmu_sc0003454.1_g000027 Rmu_sc0004436.1_g000003 Rmu_sc0006325.1_g000043
rosa_roxburghii	Rroxscaffold_2G00126530
rosa_rugosa	Rorug02G0212500 Rorug03G0351000
rosa_samantha	Rh2AG267600 Rh2DG274700 Rh2DG294000 Rh4BG065500 Rh4CG072200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	36
AcsI	RAATTY	1 cut(s)	341
AfaI	GTAC	1 cut(s)	189
AfeI	AGCGCT	1 cut(s)	299
AfiI	CCNNNNNNNGG	1 cut(s)	365
AgsI	TTSAA	2 cut(s)	56, 185
AluBI	AGCT	2 cut(s)	293, 318
AluI	AGCT	2 cut(s)	293, 318
Aor51HI	AGCGCT	1 cut(s)	299
AoxI	GGCC	1 cut(s)	80
ApeKI	GCWGC	1 cut(s)	315
ApoI	RAATTY	1 cut(s)	341
AspLEI	GCGC	1 cut(s)	300
AspS9I	GGNCC	1 cut(s)	286
AvaII	GGWCC	1 cut(s)	286
BanI	GGYRCC	1 cut(s)	36
BauI	CACGAG	1 cut(s)	155
BbvI	GCAGC	1 cut(s)	327
BccI	CCATC	1 cut(s)	220
BfaI	CTAG	1 cut(s)	290
BfmI	CTRYAG	1 cut(s)	313
BfoI	RGCGCY	1 cut(s)	301
BisI	GCNGC	1 cut(s)	316
BlpI	GCTNAGC	1 cut(s)	294
BlsI	GCNGC	1 cut(s)	317
Bme18I	GGWCC	1 cut(s)	286
BmgT120I	GGNCC	1 cut(s)	286
BmiI	GGNNCC	1 cut(s)	38
BpmI	CTGGAG	1 cut(s)	161
Bpu1102I	GCTNAGC	1 cut(s)	294
BpuEI	CTTGAG	1 cut(s)	197
BsaJI	CCNNGG	1 cut(s)	23
BsaWI	WCCGGW	1 cut(s)	283
BsaXI	ACNNNNNCTCC	2 cut(s)	134, 164
Bsc4I	CCNNNNNNNGG	1 cut(s)	365
Bse118I	RCCGGY	1 cut(s)	218
BseDI	CCNNGG	1 cut(s)	23
BseLI	CCNNNNNNNGG	1 cut(s)	365
BseMII	CTCAG	1 cut(s)	308
BseXI	GCAGC	1 cut(s)	327
BshFI	GGCC	1 cut(s)	82
BshNI	GGYRCC	1 cut(s)	36
BsiSI	CCGG	2 cut(s)	219, 284
BslI	CCNNNNNNNGG	1 cut(s)	365
BsnI	GGCC	1 cut(s)	82
Bsp1720I	GCTNAGC	1 cut(s)	294
BspANI	GGCC	1 cut(s)	82
BspCNI	CTCAG	1 cut(s)	307
BspLI	GGNNCC	1 cut(s)	38
BspMAI	CTGCAG	1 cut(s)	317
BspT107I	GGYRCC	1 cut(s)	36
BsrFI	RCCGGY	1 cut(s)	218
BssAI	RCCGGY	1 cut(s)	218
BssECI	CCNNGG	1 cut(s)	23
BssSI	CACGAG	1 cut(s)	155
BssT1I	CCWWGG	1 cut(s)	23
Bst2BI	CACGAG	1 cut(s)	155
BstDEI	CTNAG	2 cut(s)	90, 294
BstH2I	RGCGCY	1 cut(s)	301
BstHHI	GCGC	1 cut(s)	300
BstMWI	GCNNNNNNNGC	2 cut(s)	306, 315
BstSFI	CTRYAG	1 cut(s)	313
BstV1I	GCAGC	1 cut(s)	327
BsuRI	GGCC	1 cut(s)	82
CfoI	GCGC	1 cut(s)	300
Cfr10I	RCCGGY	1 cut(s)	218
Cfr13I	GGNCC	1 cut(s)	286
Csp6I	GTAC	1 cut(s)	188
CviAII	CATG	1 cut(s)	6
CviJI	RGCY	7 cut(s)	59, 82, 139, 154, 175, 293, 318
CviKI_1	RGCY	7 cut(s)	59, 82, 139, 154, 175, 293, 318
CviQI	GTAC	1 cut(s)	188
DdeI	CTNAG	2 cut(s)	90, 294
Eco130I	CCWWGG	1 cut(s)	23
Eco32I	GATATC	1 cut(s)	271
Eco47I	GGWCC	1 cut(s)	286
Eco47III	AGCGCT	1 cut(s)	299
EcoRV	GATATC	1 cut(s)	271
EcoT14I	CCWWGG	1 cut(s)	23
ErhI	CCWWGG	1 cut(s)	23
FaeI	CATG	1 cut(s)	9
FaiI	YATR	6 cut(s)	7, 98, 100, 136, 251, 375
FatI	CATG	1 cut(s)	5
Fnu4HI	GCNGC	1 cut(s)	316
Fsp4HI	GCNGC	1 cut(s)	316
FspBI	CTAG	1 cut(s)	290
GlaI	GCGC	1 cut(s)	299
GluI	GCNGC	1 cut(s)	316
GsuI	CTGGAG	1 cut(s)	161
HaeII	RGCGCY	1 cut(s)	301
HaeIII	GGCC	1 cut(s)	82
HapII	CCGG	2 cut(s)	219, 284
HhaI	GCGC	1 cut(s)	300
Hin1II	CATG	1 cut(s)	9
Hin6I	GCGC	1 cut(s)	298
HinP1I	GCGC	1 cut(s)	298
HincII	GTYRAC	1 cut(s)	334
HindII	GTYRAC	1 cut(s)	334
HinfI	GANTC	2 cut(s)	76, 181
HpaII	CCGG	2 cut(s)	219, 284
Hpy166II	GTNNAC	2 cut(s)	190, 334
Hpy188I	TCNGA	1 cut(s)	386
Hpy188III	TCNNGA	1 cut(s)	73
Hpy8I	GTNNAC	2 cut(s)	190, 334
HpyAV	CCTTC	2 cut(s)	99, 365
HpyCH4V	TGCA	2 cut(s)	9, 315
HpyF10VI	GCNNNNNNNGC	2 cut(s)	306, 315
HpyF3I	CTNAG	2 cut(s)	90, 294
Hsp92II	CATG	1 cut(s)	9
HspAI	GCGC	1 cut(s)	298
LpnPI	CCDG	7 cut(s)	86, 125, 156, 232, 288, 297, 372
Lsp1109I	GCAGC	1 cut(s)	327
MaeI	CTAG	1 cut(s)	290
MboII	GAAGA	1 cut(s)	58
MluCI	AATT	4 cut(s)	128, 256, 274, 341
MnlI	CCTC	3 cut(s)	21, 136, 320
MspI	CCGG	2 cut(s)	219, 284
MwoI	GCNNNNNNNGC	2 cut(s)	306, 315
NlaIII	CATG	1 cut(s)	9
NlaIV	GGNNCC	1 cut(s)	38
PfeI	GAWTC	2 cut(s)	76, 181
PkrI	GCNGC	1 cut(s)	317
PspN4I	GGNNCC	1 cut(s)	38
PspPI	GGNCC	1 cut(s)	286
PstI	CTGCAG	1 cut(s)	317
RsaI	GTAC	1 cut(s)	189
RsaNI	GTAC	1 cut(s)	188
SatI	GCNGC	1 cut(s)	316
Sau96I	GGNCC	1 cut(s)	286
SetI	ASST	2 cut(s)	295, 320
SfcI	CTRYAG	1 cut(s)	313
SinI	GGWCC	1 cut(s)	286
SmlI	CTYRAG	1 cut(s)	176
SmoI	CTYRAG	1 cut(s)	176
Sse9I	AATT	4 cut(s)	128, 256, 274, 341
SspMI	CTAG	1 cut(s)	290
StyI	CCWWGG	1 cut(s)	23
TasI	AATT	4 cut(s)	128, 256, 274, 341
TatI	WGTACW	1 cut(s)	187
TfiI	GAWTC	2 cut(s)	76, 181
TseI	GCWGC	1 cut(s)	315
TspDTI	ATGAA	1 cut(s)	268
TspGWI	ACGGA	2 cut(s)	129, 276
VpaK11BI	GGWCC	1 cut(s)	286
XapI	RAATTY	1 cut(s)	341
XspI	CTAG	1 cut(s)	290

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.