FvH4_7g09720

Protein of unknown function (DUF1639)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0014795
Physical Location & Seq
Reverse (-)
9323678 .. 9325232
1555 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g09720.t1

Sequence Viewer

Length: 738 bp
ATGGCCTCCCCCTCGACCTTTTCACCCAATAAGTCGACTTCCCAAACCTCCTATCCTGACATCCTCGACCTGAAATGGACCAAAAAAGTTTCACGTCACTCTCACCAGACTGGCATCAAAACCCGACTCCTCACTGACATACCTGCCGAGGACTCCTCCAGAAATGAAGTCTTGTTAGGACACCCGCCTCTCGGAAAGCAAGATTTAAATTTGGATCGTTTCAAGATTATCTTCAAGTTACCTCCACCCGGCTCAAAGGAACACAAAGCTCCTGTGGTGGAAGAAGAAGCAGAGGGTGAAAACCCTAACCCTGAGAATGCTGATGCTGTCGTTGCTGCTGCTTTAGCTGCGCAAGAAGCAGAAGAGGTGGTGACCAAGACATGGAACCTTAGGCCCCGCAAACCCCGCAAACCGGTGCGCAATCCCAATCGTGATGCCACGGGTGCAGCGGGGGCGCAGAATAACAGAAACCCCGGGGTGGGTCGGTCCAGACCGGCTAGAGTTCCTCAGAGTAAAAAACCACCGGAGCCGAGGATGGAGATATCGCTTACATTGACCAAAGAGGAGATTGAGGAGGACTTTCTTCGCATGACAGGGAAGAAGCCCGCGCGGCGGCCCAAGATGAGGCTAAAGAATGTGCAGAAGCAGCTGGATATTCTAACGCCAGGGCAGTTATATCTGGATGATATATCAGCGCATGGTAGCCAACAAGCTAAGTTGAATAAAGGATCAGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1639

Protein Analysis

246

Amino Acids

27.17

Weight (kDa)

9.74

Isoelectric Point (pI)

53.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1639 PF07797 185 - 231 2.2e-19 Protein of unknown function (DUF1639)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 2 cut(s) 351, 419
Acc36I ACCTGC 1 cut(s) 151
AccB7I CCANNNNNTGG 1 cut(s) 381
AccI GTMKAC 1 cut(s) 35
AccII CGCG 2 cut(s) 608, 610
AciI CCGC 7 cut(s) 185, 397, 406, 449, 606, 610, 613
AclWI GGATC 2 cut(s) 222, 736
AcsI RAATTY 1 cut(s) 208
AfiI CCNNNNNNNGG 8 cut(s) 191, 248, 381, 412, 478, 479, 612, 624
AgeI ACCGGT 1 cut(s) 412
AgsI TTSAA 3 cut(s) 223, 235, 721
AjiI CACGTC 1 cut(s) 95
AjnI CCWGG 1 cut(s) 664
AluBI AGCT 4 cut(s) 269, 347, 649, 713
AluI AGCT 4 cut(s) 269, 347, 649, 713
AlwI GGATC 2 cut(s) 222, 736
Ama87I CYCGRG 1 cut(s) 473
AoxI GGCC 3 cut(s) 3, 392, 614
ApeKI GCWGC 5 cut(s) 335, 338, 347, 446, 646
ApoI RAATTY 1 cut(s) 208
AsiGI ACCGGT 1 cut(s) 412
AspLEI GCGC 5 cut(s) 352, 420, 457, 610, 697
AspS9I GGNCC 4 cut(s) 78, 393, 486, 615
AsuC2I CCSGG 3 cut(s) 249, 474, 475
AsuHPI GGTGA 4 cut(s) 15, 95, 308, 382
AvaI CYCGRG 1 cut(s) 473
AvaII GGWCC 2 cut(s) 78, 486
AxyI CCTNAGG 1 cut(s) 389
BbvI GCAGC 5 cut(s) 322, 325, 334, 458, 658
BccI CCATC 1 cut(s) 529
BciT130I CCWGG 1 cut(s) 666
BcnI CCSGG 3 cut(s) 249, 474, 475
BfaI CTAG 1 cut(s) 498
BfuAI ACCTGC 1 cut(s) 151
BglI GCCNNNNNGGC 1 cut(s) 610
BisI GCNGC 7 cut(s) 336, 339, 348, 447, 611, 614, 647
BlsI GCNGC 7 cut(s) 337, 340, 349, 448, 612, 615, 648
Bme1390I CCNGG 4 cut(s) 249, 474, 475, 666
Bme18I GGWCC 2 cut(s) 78, 486
BmeT110I CYCGRG 1 cut(s) 473
BmgBI CACGTC 1 cut(s) 95
BmgT120I GGNCC 4 cut(s) 78, 393, 486, 615
BmiI GGNNCC 3 cut(s) 386, 395, 528
BmrFI CCNGG 4 cut(s) 249, 474, 475, 666
BmsI GCATC 3 cut(s) 123, 313, 424
BplI GAGNNNNNCTC 2 cut(s) 140, 172
BpmI CTGGAG 1 cut(s) 142
BpuMI CCSGG 3 cut(s) 249, 474, 475
BsaJI CCNNGG 7 cut(s) 147, 438, 472, 473, 474, 530, 665
BsaWI WCCGGW 2 cut(s) 412, 523
Bsc4I CCNNNNNNNGG 8 cut(s) 191, 248, 381, 412, 478, 479, 612, 624
Bse118I RCCGGY 2 cut(s) 412, 493
Bse1I ACTGG 1 cut(s) 115
Bse21I CCTNAGG 1 cut(s) 389
BseBI CCWGG 1 cut(s) 666
BseDI CCNNGG 7 cut(s) 147, 438, 472, 473, 474, 530, 665
BseGI GGATG 3 cut(s) 60, 540, 688
BseLI CCNNNNNNNGG 8 cut(s) 191, 248, 381, 412, 478, 479, 612, 624
BseMII CTCAG 2 cut(s) 303, 521
BseNI ACTGG 1 cut(s) 115
BseRI GAGGAG 4 cut(s) 119, 145, 578, 587
BseXI GCAGC 5 cut(s) 322, 325, 334, 458, 658
BsgI GTGCAG 2 cut(s) 465, 659
Bsh1236I CGCG 2 cut(s) 608, 610
BshFI GGCC 3 cut(s) 5, 394, 616
BshTI ACCGGT 1 cut(s) 412
BsiHKCI CYCGRG 1 cut(s) 473
BsiSI CCGG 5 cut(s) 249, 413, 474, 494, 524
BslI CCNNNNNNNGG 8 cut(s) 191, 248, 381, 412, 478, 479, 612, 624
BsmI GAATGC 1 cut(s) 322
BsnI GGCC 3 cut(s) 5, 394, 616
BsoBI CYCGRG 1 cut(s) 473
Bsp143I GATC 2 cut(s) 214, 728
BspACI CCGC 7 cut(s) 185, 397, 406, 449, 606, 610, 613
BspANI GGCC 3 cut(s) 5, 394, 616
BspCNI CTCAG 2 cut(s) 304, 520
BspFNI CGCG 2 cut(s) 608, 610
BspLI GGNNCC 3 cut(s) 386, 395, 528
BspMI ACCTGC 1 cut(s) 151
BspPI GGATC 2 cut(s) 222, 736
BsrFI RCCGGY 2 cut(s) 412, 493
BsrI ACTGG 1 cut(s) 115
BssAI RCCGGY 2 cut(s) 412, 493
BssECI CCNNGG 7 cut(s) 147, 438, 472, 473, 474, 530, 665
BssMI GATC 2 cut(s) 214, 728
Bst2UI CCWGG 1 cut(s) 666
Bst6I CTCTTC 1 cut(s) 357
BstC8I GCNNGC 1 cut(s) 606
BstDEI CTNAG 4 cut(s) 312, 389, 507, 714
BstDSI CCRYGG 1 cut(s) 438
BstEII GGTNACC 1 cut(s) 370
BstF5I GGATG 3 cut(s) 60, 540, 688
BstFNI CGCG 2 cut(s) 608, 610
BstHHI GCGC 5 cut(s) 352, 420, 457, 610, 697
BstKTI GATC 2 cut(s) 217, 731
BstMBI GATC 2 cut(s) 214, 728
BstMWI GCNNNNNNNGC 9 cut(s) 332, 344, 347, 356, 405, 443, 452, 610, 646
BstNI CCWGG 1 cut(s) 666
BstPI GGTNACC 1 cut(s) 370
BstSCI CCNGG 4 cut(s) 247, 472, 473, 664
BstUI CGCG 2 cut(s) 608, 610
BstV1I GCAGC 5 cut(s) 322, 325, 334, 458, 658
Bsu36I CCTNAGG 1 cut(s) 389
BsuRI GGCC 3 cut(s) 5, 394, 616
BtgI CCRYGG 1 cut(s) 438
BtrI CACGTC 1 cut(s) 95
BtsCI GGATG 3 cut(s) 60, 540, 688
BtsIMutI CAGTG 1 cut(s) 132
BveI ACCTGC 1 cut(s) 151
Cac8I GCNNGC 1 cut(s) 606
CfoI GCGC 5 cut(s) 352, 420, 457, 610, 697
Cfr10I RCCGGY 2 cut(s) 412, 493
Cfr13I GGNCC 4 cut(s) 78, 393, 486, 615
Cfr9I CCCGGG 1 cut(s) 473
CspAI ACCGGT 1 cut(s) 412
CviAII CATG 3 cut(s) 381, 589, 698
DdeI CTNAG 4 cut(s) 312, 389, 507, 714
DpnI GATC 2 cut(s) 216, 730
DpnII GATC 2 cut(s) 214, 728
DraI TTTAAA 1 cut(s) 207
Eam1104I CTCTTC 1 cut(s) 357
EarI CTCTTC 1 cut(s) 357
Eco32I GATATC 1 cut(s) 543
Eco47I GGWCC 2 cut(s) 78, 486
Eco81I CCTNAGG 1 cut(s) 389
Eco88I CYCGRG 1 cut(s) 473
Eco91I GGTNACC 1 cut(s) 370
EcoO109I RGGNCCY 1 cut(s) 393
EcoO65I GGTNACC 1 cut(s) 370
EcoRII CCWGG 1 cut(s) 664
EcoRV GATATC 1 cut(s) 543
FaeI CATG 3 cut(s) 384, 592, 701
FaiI YATR 6 cut(s) 140, 382, 590, 676, 689, 699
FalI AAGNNNNNCTT 2 cut(s) 215, 247
FatI CATG 3 cut(s) 380, 588, 697
FauI CCCGC 5 cut(s) 192, 404, 413, 442, 613
FblI GTMKAC 1 cut(s) 35
Fnu4HI GCNGC 7 cut(s) 336, 339, 348, 447, 611, 614, 647
FokI GGATG 3 cut(s) 47, 547, 695
Fsp4HI GCNGC 7 cut(s) 336, 339, 348, 447, 611, 614, 647
FspBI CTAG 1 cut(s) 498
FspI TGCGCA 2 cut(s) 351, 419
GlaI GCGC 5 cut(s) 351, 419, 456, 609, 696
GluI GCNGC 7 cut(s) 336, 339, 348, 447, 611, 614, 647
GsuI CTGGAG 1 cut(s) 142
HaeIII GGCC 3 cut(s) 5, 394, 616
HapII CCGG 5 cut(s) 249, 413, 474, 494, 524
HhaI GCGC 5 cut(s) 352, 420, 457, 610, 697
Hin1II CATG 3 cut(s) 384, 592, 701
Hin6I GCGC 5 cut(s) 350, 418, 455, 608, 695
HinP1I GCGC 5 cut(s) 350, 418, 455, 608, 695
HincII GTYRAC 1 cut(s) 36
HindII GTYRAC 1 cut(s) 36
HinfI GANTC 2 cut(s) 126, 152
HpaII CCGG 5 cut(s) 249, 413, 474, 494, 524
HphI GGTGA 4 cut(s) 15, 95, 308, 382
Hpy166II GTNNAC 1 cut(s) 36
Hpy188I TCNGA 3 cut(s) 194, 510, 733
Hpy188III TCNNGA 6 cut(s) 56, 159, 223, 431, 489, 680
Hpy8I GTNNAC 1 cut(s) 36
HpyCH4IV ACGT 1 cut(s) 94
HpyCH4V TGCA 2 cut(s) 446, 640
HpyF10VI GCNNNNNNNGC 9 cut(s) 332, 344, 347, 356, 405, 443, 452, 610, 646
HpyF3I CTNAG 4 cut(s) 312, 389, 507, 714
HpySE526I ACGT 1 cut(s) 94
Hsp92II CATG 3 cut(s) 384, 592, 701
HspAI GCGC 5 cut(s) 350, 418, 455, 608, 695
Kzo9I GATC 2 cut(s) 214, 728
LmnI GCTCC 2 cut(s) 274, 526
Lsp1109I GCAGC 5 cut(s) 322, 325, 334, 458, 658
LweI GCATC 3 cut(s) 123, 313, 424
MaeI CTAG 1 cut(s) 498
MaeII ACGT 1 cut(s) 94
MaeIII GTNAC 3 cut(s) 95, 237, 370
MalI GATC 2 cut(s) 216, 730
MboI GATC 2 cut(s) 214, 728
MboII GAAGA 6 cut(s) 223, 293, 296, 374, 575, 610
MluCI AATT 1 cut(s) 208
MlyI GAGTC 2 cut(s) 120, 146
MseI TTAA 1 cut(s) 206
MspA1I CMGCKG 2 cut(s) 449, 649
MspI CCGG 5 cut(s) 249, 413, 474, 494, 524
MspR9I CCNGG 4 cut(s) 249, 474, 475, 666
Mva1269I GAATGC 1 cut(s) 322
MvaI CCWGG 1 cut(s) 666
MvnI CGCG 2 cut(s) 608, 610
MwoI GCNNNNNNNGC 9 cut(s) 332, 344, 347, 356, 405, 443, 452, 610, 646
NciI CCSGG 3 cut(s) 249, 474, 475
NdeII GATC 2 cut(s) 214, 728
NlaIII CATG 3 cut(s) 384, 592, 701
NlaIV GGNNCC 3 cut(s) 386, 395, 528
NmeAIII GCCGAG 2 cut(s) 172, 555
NmuCI GTSAC 2 cut(s) 95, 370
NsbI TGCGCA 2 cut(s) 351, 419
PctI GAATGC 1 cut(s) 322
PflMI CCANNNNNTGG 1 cut(s) 381
PinAI ACCGGT 1 cut(s) 412
PkrI GCNGC 7 cut(s) 337, 340, 349, 448, 612, 615, 648
PleI GAGTC 2 cut(s) 120, 146
PpsI GAGTC 2 cut(s) 120, 146
Psp6I CCWGG 1 cut(s) 664
PspEI GGTNACC 1 cut(s) 370
PspGI CCWGG 1 cut(s) 664
PspN4I GGNNCC 3 cut(s) 386, 395, 528
PspPI GGNCC 4 cut(s) 78, 393, 486, 615
PvuII CAGCTG 1 cut(s) 649
SalI GTCGAC 1 cut(s) 34
SaqAI TTAA 1 cut(s) 206
SatI GCNGC 7 cut(s) 336, 339, 348, 447, 611, 614, 647
Sau3AI GATC 2 cut(s) 214, 728
Sau96I GGNCC 4 cut(s) 78, 393, 486, 615
SchI GAGTC 2 cut(s) 120, 146
ScrFI CCNGG 4 cut(s) 249, 474, 475, 666
SfaNI GCATC 3 cut(s) 123, 313, 424
SinI GGWCC 2 cut(s) 78, 486
SmaI CCCGGG 1 cut(s) 475
SmiI ATTTAAAT 1 cut(s) 207
Sse9I AATT 1 cut(s) 208
SsiI CCGC 7 cut(s) 185, 397, 406, 449, 606, 610, 613
SspMI CTAG 1 cut(s) 498
StyD4I CCNGG 4 cut(s) 247, 472, 473, 664
SwaI ATTTAAAT 1 cut(s) 207
TaiI ACGT 1 cut(s) 97
TaqI TCGA 3 cut(s) 14, 35, 66
TaqII GACCGA 1 cut(s) 474
TasI AATT 1 cut(s) 208
TauI GCSGC 2 cut(s) 613, 616
Tru1I TTAA 1 cut(s) 206
Tru9I TTAA 1 cut(s) 206
TscAI CASTG 1 cut(s) 139
TseFI GTSAC 2 cut(s) 95, 370
TseI GCWGC 5 cut(s) 335, 338, 347, 446, 646
Tsp45I GTSAC 2 cut(s) 95, 370
TspDTI ATGAA 1 cut(s) 180
TspMI CCCGGG 1 cut(s) 473
TspRI CASTG 1 cut(s) 139
Van91I CCANNNNNTGG 1 cut(s) 381
VpaK11BI GGWCC 2 cut(s) 78, 486
XapI RAATTY 1 cut(s) 208
XmaI CCCGGG 1 cut(s) 473
XmiI GTMKAC 1 cut(s) 35
XspI CTAG 1 cut(s) 498
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.