Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002640.1

Orthogroup ID

OG0014795

Physical Location & Seq

Genomic Coordinates Reverse (-)

79803 .. 80531

Gene Structure 729 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002640.1_g000023.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 729 bp

atggcttcctcctcgtctgtgtcacccaataagtggacttcccagacccccaaccctgacatatcggggttgaaatggaccaagaaaaactcacgtcactctcgccagttgggcaatgaaccccaactccccaaccatgactcggcagctgagctacctgaccacaactccgacactggggaaaacgtcattgaccagaacgaagtcttgtccgaacagccgcaccccaagaaaccaaatttgaaggtttacattcggctcaagctggacaaagacgacgctcctcaggtgaaaaaagaagcagaggatcaaaaccctaaatctgatgatcctgctgttgctgctttggctgctttagctgcgggggaaggattggcggagaagaggaacaaaacatggaatctgaggcccaggaaaccggtgaagaagcctaatggggaggatagtgccatgaagaccggtgcaccggtggggcagcataacgaaatcccggagctgggtcggtccagactggctagaggttgtcaaacgaaaaaaccaaaggagccgaggatggagatatcgcttacattgaccaaagaggagattgagaaagatattttactcttgacagggaagaagccatcgcgccggcccaagaggaggcctaggagtctgcagaagcagctggatgtactgtatcatattccaattcaattgtcgtttggctgtccaattttatttctgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1639

Protein Analysis

242

Amino Acids

27.04

Weight (kDa)

9.61

Isoelectric Point (pI)

54.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014795)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g09720
prunus_persica	Prupe.2G125500_v2.0.a1 Prupe.2G125500_v2.0.a1 Prupe.2G125500_v2.0.a1 Prupe.2G125500_v2.0.a1 Prupe.2G125500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0346661
rosa_laevigata	RLG00000028787
rosa_multiflora	Rmu_sc0002640.1_g000023 Rmu_sc0006463.1_g000004
rosa_roxburghii	Rroxscaffold_4G00308340
rosa_rugosa	Rorug01G0182100
rosa_samantha	Rh1AG200800 Rh1BG167100 Rh1CG185700 Rh1DG197900
rosa_wichuraiana	Rw1G016830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	33
AccII	CGCG	1 cut(s)	628
AciI	CCGC	3 cut(s)	221, 362, 377
AclWI	GGATC	2 cut(s)	315, 323
AcsI	RAATTY	1 cut(s)	238
AfaI	GTAC	1 cut(s)	675
AfiI	CCNNNNNNNGG	6 cut(s)	33, 142, 177, 496, 497, 642
AgeI	ACCGGT	3 cut(s)	418, 458, 466
AgsI	TTSAA	3 cut(s)	73, 244, 695
AjiI	CACGTC	1 cut(s)	95
AjnI	CCWGG	1 cut(s)	410
AloI	GAACNNNNNNTCC	2 cut(s)	111, 143
AluBI	AGCT	6 cut(s)	149, 154, 265, 359, 496, 667
AluI	AGCT	6 cut(s)	149, 154, 265, 359, 496, 667
Alw21I	GWGCWC	1 cut(s)	466
Alw44I	GTGCAC	1 cut(s)	462
AlwI	GGATC	2 cut(s)	315, 323
AoxI	GGCC	3 cut(s)	407, 632, 644
ApaLI	GTGCAC	1 cut(s)	462
ApeKI	GCWGC	6 cut(s)	146, 341, 350, 359, 475, 664
ApoI	RAATTY	1 cut(s)	238
AsiGI	ACCGGT	3 cut(s)	418, 458, 466
AspA2I	CCTAGG	1 cut(s)	647
AspLEI	GCGC	1 cut(s)	630
AspS9I	GGNCC	4 cut(s)	78, 408, 504, 633
AsuC2I	CCSGG	1 cut(s)	491
AsuHPI	GGTGA	3 cut(s)	15, 301, 433
AvaII	GGWCC	2 cut(s)	78, 504
AvrII	CCTAGG	1 cut(s)	647
AxyI	CCTNAGG	1 cut(s)	285
BaeGI	GKGCMC	1 cut(s)	466
BbsI	GAAGAC	1 cut(s)	461
Bbv12I	GWGCWC	1 cut(s)	466
BbvI	GCAGC	6 cut(s)	158, 328, 337, 346, 487, 676
BccI	CCATC	2 cut(s)	547, 631
BciT130I	CCWGG	1 cut(s)	412
BcnI	CCSGG	1 cut(s)	491
BfaI	CTAG	2 cut(s)	516, 648
BfmI	CTRYAG	1 cut(s)	656
BglI	GCCNNNNNGGC	1 cut(s)	111
BisI	GCNGC	7 cut(s)	147, 221, 342, 351, 360, 476, 665
BlnI	CCTAGG	1 cut(s)	647
BlpI	GCTNAGC	1 cut(s)	150
BlsI	GCNGC	7 cut(s)	148, 222, 343, 352, 361, 477, 666
Bme1390I	CCNGG	2 cut(s)	412, 491
Bme18I	GGWCC	2 cut(s)	78, 504
BmgBI	CACGTC	1 cut(s)	95
BmgT120I	GGNCC	4 cut(s)	78, 408, 504, 633
BmiI	GGNNCC	1 cut(s)	546
BmrFI	CCNGG	2 cut(s)	412, 491
BmrI	ACTGGG	1 cut(s)	186
BmuI	ACTGGG	1 cut(s)	186
BpiI	GAAGAC	1 cut(s)	461
Bpu1102I	GCTNAGC	1 cut(s)	150
BpuEI	CTTGAG	1 cut(s)	245
BpuMI	CCSGG	1 cut(s)	491
BsaJI	CCNNGG	3 cut(s)	410, 548, 647
BsaWI	WCCGGW	3 cut(s)	418, 458, 466
BsaXI	ACNNNNNCTCC	4 cut(s)	111, 141, 152, 182
Bsc4I	CCNNNNNNNGG	6 cut(s)	33, 142, 177, 496, 497, 642
Bse118I	RCCGGY	4 cut(s)	418, 458, 466, 630
Bse1I	ACTGG	3 cut(s)	106, 181, 516
Bse21I	CCTNAGG	1 cut(s)	285
Bse3DI	GCAATG	1 cut(s)	121
BseBI	CCWGG	1 cut(s)	412
BseDI	CCNNGG	3 cut(s)	410, 548, 647
BseGI	GGATG	2 cut(s)	558, 676
BseLI	CCNNNNNNNGG	6 cut(s)	33, 142, 177, 496, 497, 642
BseMI	GCAATG	1 cut(s)	121
BseMII	CTCAG	3 cut(s)	141, 299, 395
BseNI	ACTGG	3 cut(s)	106, 181, 516
BseRI	GAGGAG	3 cut(s)	273, 596, 655
BseSI	GKGCMC	1 cut(s)	466
BseXI	GCAGC	6 cut(s)	158, 328, 337, 346, 487, 676
BseYI	CCCAGC	1 cut(s)	496
Bsh1236I	CGCG	1 cut(s)	628
BshFI	GGCC	3 cut(s)	409, 634, 646
BshTI	ACCGGT	3 cut(s)	418, 458, 466
BsiHKAI	GWGCWC	1 cut(s)	466
BsiSI	CCGG	5 cut(s)	419, 459, 467, 491, 631
BslI	CCNNNNNNNGG	6 cut(s)	33, 142, 177, 496, 497, 642
BsnI	GGCC	3 cut(s)	409, 634, 646
Bsp1286I	GDGCHC	1 cut(s)	466
Bsp143I	GATC	2 cut(s)	307, 328
Bsp1720I	GCTNAGC	1 cut(s)	150
BspACI	CCGC	3 cut(s)	221, 362, 377
BspANI	GGCC	3 cut(s)	409, 634, 646
BspCNI	CTCAG	3 cut(s)	142, 298, 396
BspFNI	CGCG	1 cut(s)	628
BspLI	GGNNCC	1 cut(s)	546
BspMAI	CTGCAG	1 cut(s)	660
BspPI	GGATC	2 cut(s)	315, 323
BsrDI	GCAATG	1 cut(s)	121
BsrFI	RCCGGY	4 cut(s)	418, 458, 466, 630
BsrI	ACTGG	3 cut(s)	106, 181, 516
BssAI	RCCGGY	4 cut(s)	418, 458, 466, 630
BssECI	CCNNGG	3 cut(s)	410, 548, 647
BssMI	GATC	2 cut(s)	307, 328
BssT1I	CCWWGG	1 cut(s)	647
Bst2UI	CCWGG	1 cut(s)	412
Bst4CI	ACNGT	1 cut(s)	678
Bst6I	CTCTTC	1 cut(s)	377
BstC8I	GCNNGC	1 cut(s)	632
BstDEI	CTNAG	3 cut(s)	150, 285, 404
BstF5I	GGATG	2 cut(s)	558, 676
BstFNI	CGCG	1 cut(s)	628
BstHHI	GCGC	1 cut(s)	630
BstKTI	GATC	2 cut(s)	310, 331
BstMBI	GATC	2 cut(s)	307, 328
BstMWI	GCNNNNNNNGC	7 cut(s)	111, 341, 347, 350, 356, 359, 664
BstNI	CCWGG	1 cut(s)	412
BstSCI	CCNGG	2 cut(s)	410, 489
BstSFI	CTRYAG	1 cut(s)	656
BstSLI	GKGCMC	1 cut(s)	466
BstUI	CGCG	1 cut(s)	628
BstV1I	GCAGC	6 cut(s)	158, 328, 337, 346, 487, 676
BstV2I	GAAGAC	1 cut(s)	461
Bsu36I	CCTNAGG	1 cut(s)	285
BsuRI	GGCC	3 cut(s)	409, 634, 646
BtgZI	GCGATG	1 cut(s)	609
BtrI	CACGTC	1 cut(s)	95
BtsCI	GGATG	2 cut(s)	558, 676
BtsIMutI	CAGTG	1 cut(s)	174
Cac8I	GCNNGC	1 cut(s)	632
CfoI	GCGC	1 cut(s)	630
Cfr10I	RCCGGY	4 cut(s)	418, 458, 466, 630
Cfr13I	GGNCC	4 cut(s)	78, 408, 504, 633
CseI	GACGC	1 cut(s)	287
Csp6I	GTAC	1 cut(s)	674
CspAI	ACCGGT	3 cut(s)	418, 458, 466
CviAII	CATG	3 cut(s)	137, 396, 451
CviQI	GTAC	1 cut(s)	674
DdeI	CTNAG	3 cut(s)	150, 285, 404
DpnI	GATC	2 cut(s)	309, 330
DpnII	GATC	2 cut(s)	307, 328
Eam1104I	CTCTTC	1 cut(s)	377
EarI	CTCTTC	1 cut(s)	377
EciI	GGCGGA	1 cut(s)	392
Eco130I	CCWWGG	1 cut(s)	647
Eco147I	AGGCCT	1 cut(s)	646
Eco32I	GATATC	1 cut(s)	561
Eco47I	GGWCC	2 cut(s)	78, 504
Eco81I	CCTNAGG	1 cut(s)	285
EcoRII	CCWGG	1 cut(s)	410
EcoRV	GATATC	1 cut(s)	561
EcoT14I	CCWWGG	1 cut(s)	647
ErhI	CCWWGG	1 cut(s)	647
FaeI	CATG	3 cut(s)	140, 399, 454
FaiI	YATR	6 cut(s)	62, 138, 397, 452, 480, 684
FatI	CATG	3 cut(s)	136, 395, 450
FauI	CCCGC	1 cut(s)	355
Fnu4HI	GCNGC	7 cut(s)	147, 221, 342, 351, 360, 476, 665
FokI	GGATG	2 cut(s)	565, 683
Fsp4HI	GCNGC	7 cut(s)	147, 221, 342, 351, 360, 476, 665
FspBI	CTAG	2 cut(s)	516, 648
GlaI	GCGC	1 cut(s)	629
GluI	GCNGC	7 cut(s)	147, 221, 342, 351, 360, 476, 665
GsaI	CCCAGC	1 cut(s)	500
HaeIII	GGCC	3 cut(s)	409, 634, 646
HapII	CCGG	5 cut(s)	419, 459, 467, 491, 631
HgaI	GACGC	1 cut(s)	287
HhaI	GCGC	1 cut(s)	630
Hin1II	CATG	3 cut(s)	140, 399, 454
Hin6I	GCGC	1 cut(s)	628
HinP1I	GCGC	1 cut(s)	628
HinfI	GANTC	3 cut(s)	140, 400, 652
HpaII	CCGG	5 cut(s)	419, 459, 467, 491, 631
HphI	GGTGA	3 cut(s)	15, 301, 433
Hpy166II	GTNNAC	3 cut(s)	36, 250, 464
Hpy188I	TCNGA	4 cut(s)	172, 214, 325, 405
Hpy188III	TCNNGA	2 cut(s)	507, 607
Hpy8I	GTNNAC	3 cut(s)	36, 250, 464
Hpy99I	CGWCG	1 cut(s)	281
HpyAV	CCTTC	2 cut(s)	238, 362
HpyCH4III	ACNGT	1 cut(s)	678
HpyCH4IV	ACGT	2 cut(s)	94, 186
HpyCH4V	TGCA	2 cut(s)	464, 658
HpyF10VI	GCNNNNNNNGC	7 cut(s)	111, 341, 347, 350, 356, 359, 664
HpyF3I	CTNAG	3 cut(s)	150, 285, 404
HpySE526I	ACGT	2 cut(s)	94, 186
Hsp92II	CATG	3 cut(s)	140, 399, 454
HspAI	GCGC	1 cut(s)	628
KroI	GCCGGC	1 cut(s)	630
KroNI	GCCGGC	1 cut(s)	632
Kzo9I	GATC	2 cut(s)	307, 328
LmnI	GCTCC	3 cut(s)	286, 493, 544
Lsp1109I	GCAGC	6 cut(s)	158, 328, 337, 346, 487, 676
MaeI	CTAG	2 cut(s)	516, 648
MaeII	ACGT	2 cut(s)	94, 186
MaeIII	GTNAC	2 cut(s)	21, 95
MalI	GATC	2 cut(s)	309, 330
MboI	GATC	2 cut(s)	307, 328
MboII	GAAGA	4 cut(s)	394, 436, 466, 628
MfeI	CAATTG	1 cut(s)	695
MhlI	GDGCHC	1 cut(s)	466
MluCI	AATT	4 cut(s)	238, 690, 695, 714
MlyI	GAGTC	2 cut(s)	134, 661
MmeI	TCCRAC	1 cut(s)	195
MroNI	GCCGGC	1 cut(s)	630
MspA1I	CMGCKG	2 cut(s)	149, 667
MspI	CCGG	5 cut(s)	419, 459, 467, 491, 631
MspR9I	CCNGG	2 cut(s)	412, 491
MunI	CAATTG	1 cut(s)	695
MvaI	CCWGG	1 cut(s)	412
MvnI	CGCG	1 cut(s)	628
MwoI	GCNNNNNNNGC	7 cut(s)	111, 341, 347, 350, 356, 359, 664
NaeI	GCCGGC	1 cut(s)	632
NciI	CCSGG	1 cut(s)	491
NdeII	GATC	2 cut(s)	307, 328
NgoMIV	GCCGGC	1 cut(s)	630
NlaIII	CATG	3 cut(s)	140, 399, 454
NlaIV	GGNNCC	1 cut(s)	546
NmeAIII	GCCGAG	2 cut(s)	122, 573
NmuCI	GTSAC	2 cut(s)	21, 95
PceI	AGGCCT	1 cut(s)	646
PdiI	GCCGGC	1 cut(s)	632
PfeI	GAWTC	1 cut(s)	400
PflMI	CCANNNNNTGG	1 cut(s)	33
PfoI	TCCNGGA	1 cut(s)	489
PinAI	ACCGGT	3 cut(s)	418, 458, 466
PkrI	GCNGC	7 cut(s)	148, 222, 343, 352, 361, 477, 666
PleI	GAGTC	2 cut(s)	134, 660
PpsI	GAGTC	2 cut(s)	134, 660
Psp6I	CCWGG	1 cut(s)	410
PspFI	CCCAGC	1 cut(s)	496
PspGI	CCWGG	1 cut(s)	410
PspN4I	GGNNCC	1 cut(s)	546
PspPI	GGNCC	4 cut(s)	78, 408, 504, 633
PstI	CTGCAG	1 cut(s)	660
PvuII	CAGCTG	2 cut(s)	149, 667
RsaI	GTAC	1 cut(s)	675
RsaNI	GTAC	1 cut(s)	674
SatI	GCNGC	7 cut(s)	147, 221, 342, 351, 360, 476, 665
Sau3AI	GATC	2 cut(s)	307, 328
Sau96I	GGNCC	4 cut(s)	78, 408, 504, 633
SchI	GAGTC	2 cut(s)	134, 661
ScrFI	CCNGG	2 cut(s)	412, 491
SduI	GDGCHC	1 cut(s)	466
SfcI	CTRYAG	1 cut(s)	656
SgrAI	CRCCGGYG	1 cut(s)	466
SinI	GGWCC	2 cut(s)	78, 504
SmlI	CTYRAG	1 cut(s)	260
SmoI	CTYRAG	1 cut(s)	260
Sse9I	AATT	4 cut(s)	238, 690, 695, 714
SseBI	AGGCCT	1 cut(s)	646
SsiI	CCGC	3 cut(s)	221, 362, 377
SspMI	CTAG	2 cut(s)	516, 648
StuI	AGGCCT	1 cut(s)	646
StyD4I	CCNGG	2 cut(s)	410, 489
StyI	CCWWGG	1 cut(s)	647
TaaI	ACNGT	1 cut(s)	678
TaiI	ACGT	2 cut(s)	97, 189
TaqII	GACCGA	1 cut(s)	492
TasI	AATT	4 cut(s)	238, 690, 695, 714
TatI	WGTACW	1 cut(s)	673
TauI	GCSGC	1 cut(s)	223
TfiI	GAWTC	1 cut(s)	400
TscAI	CASTG	1 cut(s)	181
TseFI	GTSAC	2 cut(s)	21, 95
TseI	GCWGC	6 cut(s)	146, 341, 350, 359, 475, 664
Tsp45I	GTSAC	2 cut(s)	21, 95
TspDTI	ATGAA	2 cut(s)	132, 467
TspRI	CASTG	1 cut(s)	181
Van91I	CCANNNNNTGG	1 cut(s)	33
VneI	GTGCAC	1 cut(s)	462
VpaK11BI	GGWCC	2 cut(s)	78, 504
XapI	RAATTY	1 cut(s)	238
XmaJI	CCTAGG	1 cut(s)	647
XspI	CTAG	2 cut(s)	516, 648

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.