Rroxscaffold_4G00308340

Protein of unknown function (DUF1639)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0014795
Physical Location & Seq
Reverse (-)
29874183 .. 29874896
714 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00308340.1

Sequence Viewer

Length: 714 bp
ATGGCCTCCTCGTCGTCTGTGTCACCCAATAAGTGGACTTCCCAGACTCCCAACCCAGACATATCGGGGTTGAAATGGACCAAGAAAAACTCACGTCACTCTCGCCAGTTGGACAATGAACCCCAACTCCCCAACCATGACTCGGCAGCTGAGCTACCTGACCACAACTCCTACACTGAGGAAAACCTCACTGACCATAACGAAGTCTTGTCCGAACAGCCGCCCCCCAAGAAAACAAATTTGAAGGTTTACATCCGGCTCAAGCTGGACAAAGACGACGCTCCTCAGGTGAAAAGAAAAGCAGAGGATCAAAACCCTAACTCTGATGATCCTGCTGATGCTATTTTGGCTGCTTTAGCAGCTGGGGAAGGATTGGAGGAGAAGGGGAACAAAACATGGAATCTGAGGCCCAGGAAACCGGTGAAGAAGCCCAATGGGGAGGCTAGTGCCATGAAAACCGGTGCACCGGTGGGGCAGCATAACGAAATCCCGGAGGTGGGCCGGTCCAGACTGGCTAGAGGTTGTCAAACAAAAAAACCTAAGGAGCCGAGGATGGAGATATCGCTTACATTGACTAAAGAGGAGATTGAGGAGGATCTTTTACTCTTGACAGGGAAGAAGCCGTCGCGCCGGCCCAAGAGGAGGCCTAGGAGTCTGCAGAAGCAGCTGGATGTACTGTATCATATTCCAATTCAATTTTCGTTTGGCTGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1639

Protein Analysis

237

Amino Acids

26.61

Weight (kDa)

9.3

Isoelectric Point (pI)

58.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1639 PF07797 191 - 226 3.8e-15 Protein of unknown function (DUF1639)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 33
AccII CGCG 1 cut(s) 628
AciI CCGC 1 cut(s) 221
AclWI GGATC 3 cut(s) 315, 323, 603
AcsI RAATTY 1 cut(s) 238
AfaI GTAC 1 cut(s) 675
AfiI CCNNNNNNNGG 5 cut(s) 33, 142, 496, 497, 642
AgeI ACCGGT 3 cut(s) 418, 458, 466
AgsI TTSAA 3 cut(s) 73, 244, 695
AjiI CACGTC 1 cut(s) 95
AjnI CCWGG 1 cut(s) 410
AjuI GAANNNNNNNTTGG 2 cut(s) 682, 714
AloI GAACNNNNNNTCC 2 cut(s) 111, 143
AluBI AGCT 5 cut(s) 149, 154, 265, 362, 667
AluI AGCT 5 cut(s) 149, 154, 265, 362, 667
Alw21I GWGCWC 1 cut(s) 466
Alw44I GTGCAC 1 cut(s) 462
AlwI GGATC 3 cut(s) 315, 323, 603
AoxI GGCC 5 cut(s) 3, 407, 499, 632, 644
ApaLI GTGCAC 1 cut(s) 462
ApeKI GCWGC 5 cut(s) 146, 350, 359, 475, 664
ApoI RAATTY 1 cut(s) 238
AsiGI ACCGGT 3 cut(s) 418, 458, 466
AspA2I CCTAGG 1 cut(s) 647
AspLEI GCGC 1 cut(s) 630
AspS9I GGNCC 5 cut(s) 78, 408, 499, 504, 633
AsuC2I CCSGG 1 cut(s) 491
AsuHPI GGTGA 3 cut(s) 15, 301, 433
AvaII GGWCC 2 cut(s) 78, 504
AvrII CCTAGG 1 cut(s) 647
AxyI CCTNAGG 2 cut(s) 285, 540
BaeGI GKGCMC 1 cut(s) 466
Bbv12I GWGCWC 1 cut(s) 466
BbvI GCAGC 5 cut(s) 158, 337, 371, 487, 676
BccI CCATC 1 cut(s) 547
BceAI ACGGC 1 cut(s) 607
BciT130I CCWGG 1 cut(s) 412
BcnI CCSGG 1 cut(s) 491
BfaI CTAG 3 cut(s) 444, 516, 648
BfmI CTRYAG 1 cut(s) 656
BisI GCNGC 6 cut(s) 147, 221, 351, 360, 476, 665
BlnI CCTAGG 1 cut(s) 647
BlpI GCTNAGC 1 cut(s) 150
BlsI GCNGC 6 cut(s) 148, 222, 352, 361, 477, 666
Bme1390I CCNGG 2 cut(s) 412, 491
Bme18I GGWCC 2 cut(s) 78, 504
BmgBI CACGTC 1 cut(s) 95
BmgT120I GGNCC 5 cut(s) 78, 408, 499, 504, 633
BmiI GGNNCC 1 cut(s) 546
BmrFI CCNGG 2 cut(s) 412, 491
BmsI GCATC 1 cut(s) 328
Bpu1102I GCTNAGC 1 cut(s) 150
BpuEI CTTGAG 1 cut(s) 245
BpuMI CCSGG 1 cut(s) 491
BsaJI CCNNGG 3 cut(s) 410, 548, 647
BsaWI WCCGGW 3 cut(s) 418, 458, 466
BsaXI ACNNNNNCTCC 4 cut(s) 111, 141, 152, 182
Bsc4I CCNNNNNNNGG 5 cut(s) 33, 142, 496, 497, 642
Bse118I RCCGGY 5 cut(s) 418, 458, 466, 501, 630
Bse1I ACTGG 2 cut(s) 106, 516
Bse21I CCTNAGG 2 cut(s) 285, 540
BseBI CCWGG 1 cut(s) 412
BseDI CCNNGG 3 cut(s) 410, 548, 647
BseGI GGATG 3 cut(s) 252, 558, 676
BseLI CCNNNNNNNGG 5 cut(s) 33, 142, 496, 497, 642
BseMII CTCAG 4 cut(s) 141, 168, 299, 395
BseNI ACTGG 2 cut(s) 106, 516
BseRI GAGGAG 5 cut(s) 273, 392, 596, 605, 655
BseSI GKGCMC 1 cut(s) 466
BseXI GCAGC 5 cut(s) 158, 337, 371, 487, 676
BseYI CCCAGC 1 cut(s) 362
Bsh1236I CGCG 1 cut(s) 628
BshFI GGCC 5 cut(s) 5, 409, 501, 634, 646
BshTI ACCGGT 3 cut(s) 418, 458, 466
BsiHKAI GWGCWC 1 cut(s) 466
BsiSI CCGG 7 cut(s) 256, 419, 459, 467, 491, 502, 631
BslI CCNNNNNNNGG 5 cut(s) 33, 142, 496, 497, 642
BsnI GGCC 5 cut(s) 5, 409, 501, 634, 646
Bsp1286I GDGCHC 1 cut(s) 466
Bsp143I GATC 3 cut(s) 307, 328, 595
Bsp1720I GCTNAGC 1 cut(s) 150
BspACI CCGC 1 cut(s) 221
BspANI GGCC 5 cut(s) 5, 409, 501, 634, 646
BspCNI CTCAG 4 cut(s) 142, 169, 298, 396
BspFNI CGCG 1 cut(s) 628
BspLI GGNNCC 1 cut(s) 546
BspMAI CTGCAG 1 cut(s) 660
BspPI GGATC 3 cut(s) 315, 323, 603
BsrFI RCCGGY 5 cut(s) 418, 458, 466, 501, 630
BsrI ACTGG 2 cut(s) 106, 516
BssAI RCCGGY 5 cut(s) 418, 458, 466, 501, 630
BssECI CCNNGG 3 cut(s) 410, 548, 647
BssMI GATC 3 cut(s) 307, 328, 595
BssT1I CCWWGG 1 cut(s) 647
Bst2UI CCWGG 1 cut(s) 412
Bst4CI ACNGT 1 cut(s) 678
BstC8I GCNNGC 1 cut(s) 632
BstDEI CTNAG 5 cut(s) 150, 177, 285, 404, 540
BstF5I GGATG 3 cut(s) 252, 558, 676
BstFNI CGCG 1 cut(s) 628
BstHHI GCGC 1 cut(s) 630
BstKTI GATC 3 cut(s) 310, 331, 598
BstMBI GATC 3 cut(s) 307, 328, 595
BstMWI GCNNNNNNNGC 4 cut(s) 347, 356, 359, 664
BstNI CCWGG 1 cut(s) 412
BstSCI CCNGG 2 cut(s) 410, 489
BstSFI CTRYAG 1 cut(s) 656
BstSLI GKGCMC 1 cut(s) 466
BstUI CGCG 1 cut(s) 628
BstV1I GCAGC 5 cut(s) 158, 337, 371, 487, 676
BstX2I RGATCY 1 cut(s) 595
BstYI RGATCY 1 cut(s) 595
Bsu36I CCTNAGG 2 cut(s) 285, 540
BsuRI GGCC 5 cut(s) 5, 409, 501, 634, 646
BtrI CACGTC 1 cut(s) 95
BtsCI GGATG 3 cut(s) 252, 558, 676
BtsIMutI CAGTG 2 cut(s) 174, 189
Cac8I GCNNGC 1 cut(s) 632
CfoI GCGC 1 cut(s) 630
Cfr10I RCCGGY 5 cut(s) 418, 458, 466, 501, 630
Cfr13I GGNCC 5 cut(s) 78, 408, 499, 504, 633
CseI GACGC 1 cut(s) 287
Csp6I GTAC 1 cut(s) 674
CspAI ACCGGT 3 cut(s) 418, 458, 466
CviAII CATG 3 cut(s) 137, 396, 451
CviQI GTAC 1 cut(s) 674
DdeI CTNAG 5 cut(s) 150, 177, 285, 404, 540
DpnI GATC 3 cut(s) 309, 330, 597
DpnII GATC 3 cut(s) 307, 328, 595
Eco130I CCWWGG 1 cut(s) 647
Eco147I AGGCCT 1 cut(s) 646
Eco32I GATATC 1 cut(s) 561
Eco47I GGWCC 2 cut(s) 78, 504
Eco81I CCTNAGG 2 cut(s) 285, 540
EcoRII CCWGG 1 cut(s) 410
EcoRV GATATC 1 cut(s) 561
EcoT14I CCWWGG 1 cut(s) 647
ErhI CCWWGG 1 cut(s) 647
FaeI CATG 3 cut(s) 140, 399, 454
FaiI YATR 7 cut(s) 62, 138, 198, 397, 452, 480, 684
FatI CATG 3 cut(s) 136, 395, 450
Fnu4HI GCNGC 6 cut(s) 147, 221, 351, 360, 476, 665
FokI GGATG 3 cut(s) 239, 565, 683
Fsp4HI GCNGC 6 cut(s) 147, 221, 351, 360, 476, 665
FspBI CTAG 3 cut(s) 444, 516, 648
GlaI GCGC 1 cut(s) 629
GluI GCNGC 6 cut(s) 147, 221, 351, 360, 476, 665
GsaI CCCAGC 1 cut(s) 366
HaeIII GGCC 5 cut(s) 5, 409, 501, 634, 646
HapII CCGG 7 cut(s) 256, 419, 459, 467, 491, 502, 631
HgaI GACGC 1 cut(s) 287
HhaI GCGC 1 cut(s) 630
Hin1II CATG 3 cut(s) 140, 399, 454
Hin6I GCGC 1 cut(s) 628
HinP1I GCGC 1 cut(s) 628
HinfI GANTC 4 cut(s) 46, 140, 400, 652
HpaII CCGG 7 cut(s) 256, 419, 459, 467, 491, 502, 631
HphI GGTGA 3 cut(s) 15, 301, 433
Hpy166II GTNNAC 3 cut(s) 36, 250, 464
Hpy188I TCNGA 3 cut(s) 214, 325, 405
Hpy188III TCNNGA 2 cut(s) 507, 607
Hpy8I GTNNAC 3 cut(s) 36, 250, 464
Hpy99I CGWCG 3 cut(s) 16, 281, 628
HpyAV CCTTC 3 cut(s) 238, 362, 376
HpyCH4III ACNGT 1 cut(s) 678
HpyCH4IV ACGT 1 cut(s) 94
HpyCH4V TGCA 2 cut(s) 464, 658
HpyF10VI GCNNNNNNNGC 4 cut(s) 347, 356, 359, 664
HpyF3I CTNAG 5 cut(s) 150, 177, 285, 404, 540
HpySE526I ACGT 1 cut(s) 94
Hsp92II CATG 3 cut(s) 140, 399, 454
HspAI GCGC 1 cut(s) 628
KroI GCCGGC 1 cut(s) 630
KroNI GCCGGC 1 cut(s) 632
Kzo9I GATC 3 cut(s) 307, 328, 595
LmnI GCTCC 2 cut(s) 286, 544
Lsp1109I GCAGC 5 cut(s) 158, 337, 371, 487, 676
LweI GCATC 1 cut(s) 328
MaeI CTAG 3 cut(s) 444, 516, 648
MaeII ACGT 1 cut(s) 94
MaeIII GTNAC 2 cut(s) 21, 95
MalI GATC 3 cut(s) 309, 330, 597
MboI GATC 3 cut(s) 307, 328, 595
MboII GAAGA 2 cut(s) 436, 628
MflI RGATCY 1 cut(s) 595
MhlI GDGCHC 1 cut(s) 466
MluCI AATT 3 cut(s) 238, 690, 695
MlyI GAGTC 3 cut(s) 40, 134, 661
MmeI TCCRAC 1 cut(s) 90
MroNI GCCGGC 1 cut(s) 630
MseI TTAA 1 cut(s) 712
MspA1I CMGCKG 3 cut(s) 149, 362, 667
MspI CCGG 7 cut(s) 256, 419, 459, 467, 491, 502, 631
MspR9I CCNGG 2 cut(s) 412, 491
MvaI CCWGG 1 cut(s) 412
MvnI CGCG 1 cut(s) 628
MwoI GCNNNNNNNGC 4 cut(s) 347, 356, 359, 664
NaeI GCCGGC 1 cut(s) 632
NciI CCSGG 1 cut(s) 491
NdeII GATC 3 cut(s) 307, 328, 595
NgoMIV GCCGGC 1 cut(s) 630
NlaIII CATG 3 cut(s) 140, 399, 454
NlaIV GGNNCC 1 cut(s) 546
NmeAIII GCCGAG 2 cut(s) 122, 573
NmuCI GTSAC 2 cut(s) 21, 95
PceI AGGCCT 1 cut(s) 646
PdiI GCCGGC 1 cut(s) 632
PfeI GAWTC 1 cut(s) 400
PflMI CCANNNNNTGG 1 cut(s) 33
PfoI TCCNGGA 1 cut(s) 489
PinAI ACCGGT 3 cut(s) 418, 458, 466
PkrI GCNGC 6 cut(s) 148, 222, 352, 361, 477, 666
PleI GAGTC 3 cut(s) 40, 134, 660
PpsI GAGTC 3 cut(s) 40, 134, 660
Psp6I CCWGG 1 cut(s) 410
PspFI CCCAGC 1 cut(s) 362
PspGI CCWGG 1 cut(s) 410
PspN4I GGNNCC 1 cut(s) 546
PspPI GGNCC 5 cut(s) 78, 408, 499, 504, 633
PstI CTGCAG 1 cut(s) 660
PsuI RGATCY 1 cut(s) 595
PvuII CAGCTG 3 cut(s) 149, 362, 667
RsaI GTAC 1 cut(s) 675
RsaNI GTAC 1 cut(s) 674
SaqAI TTAA 1 cut(s) 712
SatI GCNGC 6 cut(s) 147, 221, 351, 360, 476, 665
Sau3AI GATC 3 cut(s) 307, 328, 595
Sau96I GGNCC 5 cut(s) 78, 408, 499, 504, 633
SchI GAGTC 3 cut(s) 40, 134, 661
ScrFI CCNGG 2 cut(s) 412, 491
SduI GDGCHC 1 cut(s) 466
SfaNI GCATC 1 cut(s) 328
SfcI CTRYAG 1 cut(s) 656
SgrAI CRCCGGYG 1 cut(s) 466
SinI GGWCC 2 cut(s) 78, 504
SmlI CTYRAG 1 cut(s) 260
SmoI CTYRAG 1 cut(s) 260
Sse9I AATT 3 cut(s) 238, 690, 695
SseBI AGGCCT 1 cut(s) 646
SsiI CCGC 1 cut(s) 221
SspMI CTAG 3 cut(s) 444, 516, 648
StuI AGGCCT 1 cut(s) 646
StyD4I CCNGG 2 cut(s) 410, 489
StyI CCWWGG 1 cut(s) 647
TaaI ACNGT 1 cut(s) 678
TaiI ACGT 1 cut(s) 97
TasI AATT 3 cut(s) 238, 690, 695
TatI WGTACW 1 cut(s) 673
TauI GCSGC 1 cut(s) 223
TfiI GAWTC 1 cut(s) 400
Tru1I TTAA 1 cut(s) 712
Tru9I TTAA 1 cut(s) 712
TscAI CASTG 2 cut(s) 181, 196
TseFI GTSAC 2 cut(s) 21, 95
TseI GCWGC 5 cut(s) 146, 350, 359, 475, 664
Tsp45I GTSAC 2 cut(s) 21, 95
TspDTI ATGAA 2 cut(s) 132, 467
TspRI CASTG 2 cut(s) 181, 196
Van91I CCANNNNNTGG 1 cut(s) 33
VneI GTGCAC 1 cut(s) 462
VpaK11BI GGWCC 2 cut(s) 78, 504
XapI RAATTY 1 cut(s) 238
XmaJI CCTAGG 1 cut(s) 647
XspI CTAG 3 cut(s) 444, 516, 648
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.