Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0014795

Physical Location & Seq

Genomic Coordinates Reverse (-)

26811095 .. 26825017

Gene Structure 13923 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG167100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 765 bp

ATGGCCTCCTCCTCGTCTGTGTCACCCAATAAGTGGACTTCCCAGACCCCCAACCCTGACATATCGGGGTTGAAATGGACCAAGAAAAACTCACGTCACTCTCGCCAGTTGGGCAATGAACCCCAACTCCCCAACCAGGACTCGGCAGCTGAGCTACCTGACCACAACTCCGACACTGGGGAAAACCTCATTGACCAGAACGAAGTCTTGTCCGAACAGCCGCACCCCAAGAAACCAAATTTGAAGGTTTACATCCGGCTCAAGCTGGACAAAGACGACGCTCCTCAGGTGAAAAAAAAAGCAGAGGATCAAAACCCTAAATCTGATGATCCTGCTGTTGCTGCTTTGGCTGCTTTAGCTGCGGGGGAAGGATTGGAGGAGAAGGGGAACAAAACATGGAATCTGAGGCCCAGGAAACCGGTGAAGAAGCCTAATGGGGAGGCTAGTGCCATGAAGACCGGTGCACCGGTGGGGCAGCATAACGAAATCCCGGAGCTGGGTCGGTCCAGACTGGCTAGAGAATATAACTCCAGGGATGTATCTGGATATGCTGTCAGCGGAAGCCTACCAGAGTTTCTGAAAACATTCCAAACTTTGCCAACATTTGGGAATCTCAAGCAATTGAACTTGGACCTCCTTTCATACCAAAGTAAAAGTAAGGAAGGTGTCAAGCTTAATGATGCTTCAGAGAAGTTAGGAAGAAGTTTGTTACAGGAGCTTCTGTTGTTAAGTGTGTCAAACTTAATCGGCTTGCACTTCATCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1639

Protein Analysis

254

Amino Acids

27.89

Weight (kDa)

9.06

Isoelectric Point (pI)

39.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014795)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g09720
prunus_persica	Prupe.2G125500_v2.0.a1 Prupe.2G125500_v2.0.a1 Prupe.2G125500_v2.0.a1 Prupe.2G125500_v2.0.a1 Prupe.2G125500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0346661
rosa_laevigata	RLG00000028787
rosa_multiflora	Rmu_sc0002640.1_g000023 Rmu_sc0006463.1_g000004
rosa_roxburghii	Rroxscaffold_4G00308340
rosa_rugosa	Rorug01G0182100
rosa_samantha	Rh1AG200800 Rh1BG167100 Rh1CG185700 Rh1DG197900
rosa_wichuraiana	Rw1G016830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	33, 605
AciI	CCGC	3 cut(s)	221, 362, 558
AclWI	GGATC	2 cut(s)	315, 323
AcsI	RAATTY	1 cut(s)	238
AcuI	CTGAAG	1 cut(s)	669
AfiI	CCNNNNNNNGG	7 cut(s)	33, 136, 142, 177, 496, 497, 605
AgeI	ACCGGT	3 cut(s)	418, 458, 466
AgsI	TTSAA	3 cut(s)	73, 244, 625
AjiI	CACGTC	1 cut(s)	95
AjnI	CCWGG	3 cut(s)	135, 410, 530
AloI	GAACNNNNNNTCC	2 cut(s)	111, 143
AluBI	AGCT	7 cut(s)	149, 154, 265, 359, 496, 673, 718
AluI	AGCT	7 cut(s)	149, 154, 265, 359, 496, 673, 718
Alw21I	GWGCWC	1 cut(s)	466
Alw44I	GTGCAC	1 cut(s)	462
AlwI	GGATC	2 cut(s)	315, 323
AoxI	GGCC	2 cut(s)	3, 407
ApaLI	GTGCAC	1 cut(s)	462
ApeKI	GCWGC	5 cut(s)	146, 341, 350, 359, 475
ApoI	RAATTY	1 cut(s)	238
AsiGI	ACCGGT	3 cut(s)	418, 458, 466
Asp700I	GAANNNNTTC	1 cut(s)	584
AspS9I	GGNCC	4 cut(s)	78, 408, 504, 631
AsuC2I	CCSGG	1 cut(s)	491
AsuHPI	GGTGA	3 cut(s)	15, 301, 433
AvaII	GGWCC	3 cut(s)	78, 504, 631
AxyI	CCTNAGG	1 cut(s)	285
BaeGI	GKGCMC	1 cut(s)	466
BbsI	GAAGAC	1 cut(s)	461
Bbv12I	GWGCWC	1 cut(s)	466
BbvI	GCAGC	5 cut(s)	158, 328, 337, 346, 487
BciT130I	CCWGG	3 cut(s)	137, 412, 532
BcnI	CCSGG	1 cut(s)	491
BfaI	CTAG	3 cut(s)	444, 516, 763
BglI	GCCNNNNNGGC	1 cut(s)	111
BisI	GCNGC	6 cut(s)	147, 221, 342, 351, 360, 476
BlpI	GCTNAGC	1 cut(s)	150
BlsI	GCNGC	6 cut(s)	148, 222, 343, 352, 361, 477
Bme1390I	CCNGG	4 cut(s)	137, 412, 491, 532
Bme18I	GGWCC	3 cut(s)	78, 504, 631
BmgBI	CACGTC	1 cut(s)	95
BmgT120I	GGNCC	4 cut(s)	78, 408, 504, 631
BmrFI	CCNGG	4 cut(s)	137, 412, 491, 532
BmrI	ACTGGG	1 cut(s)	186
BmsI	GCATC	1 cut(s)	670
BmuI	ACTGGG	1 cut(s)	186
BpiI	GAAGAC	1 cut(s)	461
BpmI	CTGGAG	1 cut(s)	514
Bpu1102I	GCTNAGC	1 cut(s)	150
BpuEI	CTTGAG	2 cut(s)	245, 599
BpuMI	CCSGG	1 cut(s)	491
BsaJI	CCNNGG	2 cut(s)	410, 531
BsaWI	WCCGGW	3 cut(s)	418, 458, 466
BsaXI	ACNNNNNCTCC	6 cut(s)	111, 141, 152, 182, 707, 737
Bsc4I	CCNNNNNNNGG	7 cut(s)	33, 136, 142, 177, 496, 497, 605
Bse118I	RCCGGY	3 cut(s)	418, 458, 466
Bse1I	ACTGG	3 cut(s)	106, 181, 516
Bse21I	CCTNAGG	1 cut(s)	285
Bse3DI	GCAATG	1 cut(s)	121
BseBI	CCWGG	3 cut(s)	137, 412, 532
BseDI	CCNNGG	2 cut(s)	410, 531
BseGI	GGATG	2 cut(s)	252, 541
BseLI	CCNNNNNNNGG	7 cut(s)	33, 136, 142, 177, 496, 497, 605
BseMI	GCAATG	1 cut(s)	121
BseMII	CTCAG	3 cut(s)	141, 299, 395
BseNI	ACTGG	3 cut(s)	106, 181, 516
BseRI	GAGGAG	2 cut(s)	273, 392
BseSI	GKGCMC	1 cut(s)	466
BseXI	GCAGC	5 cut(s)	158, 328, 337, 346, 487
BseYI	CCCAGC	1 cut(s)	496
BshFI	GGCC	2 cut(s)	5, 409
BshTI	ACCGGT	3 cut(s)	418, 458, 466
BsiHKAI	GWGCWC	1 cut(s)	466
BsiSI	CCGG	5 cut(s)	256, 419, 459, 467, 491
BslI	CCNNNNNNNGG	7 cut(s)	33, 136, 142, 177, 496, 497, 605
BsnI	GGCC	2 cut(s)	5, 409
Bsp1286I	GDGCHC	1 cut(s)	466
Bsp143I	GATC	2 cut(s)	307, 328
Bsp1720I	GCTNAGC	1 cut(s)	150
BspACI	CCGC	3 cut(s)	221, 362, 558
BspANI	GGCC	2 cut(s)	5, 409
BspCNI	CTCAG	3 cut(s)	142, 298, 396
BspPI	GGATC	2 cut(s)	315, 323
BsrDI	GCAATG	1 cut(s)	121
BsrFI	RCCGGY	3 cut(s)	418, 458, 466
BsrI	ACTGG	3 cut(s)	106, 181, 516
BssAI	RCCGGY	3 cut(s)	418, 458, 466
BssECI	CCNNGG	2 cut(s)	410, 531
BssMI	GATC	2 cut(s)	307, 328
Bst2UI	CCWGG	3 cut(s)	137, 412, 532
BstC8I	GCNNGC	1 cut(s)	752
BstDEI	CTNAG	3 cut(s)	150, 285, 404
BstF5I	GGATG	2 cut(s)	252, 541
BstKTI	GATC	2 cut(s)	310, 331
BstMBI	GATC	2 cut(s)	307, 328
BstMWI	GCNNNNNNNGC	6 cut(s)	111, 341, 347, 350, 356, 359
BstNI	CCWGG	3 cut(s)	137, 412, 532
BstSCI	CCNGG	4 cut(s)	135, 410, 489, 530
BstSLI	GKGCMC	1 cut(s)	466
BstV1I	GCAGC	5 cut(s)	158, 328, 337, 346, 487
BstV2I	GAAGAC	1 cut(s)	461
Bsu36I	CCTNAGG	1 cut(s)	285
BsuRI	GGCC	2 cut(s)	5, 409
BtrI	CACGTC	1 cut(s)	95
BtsCI	GGATG	2 cut(s)	252, 541
BtsIMutI	CAGTG	1 cut(s)	174
Cac8I	GCNNGC	1 cut(s)	752
Cfr10I	RCCGGY	3 cut(s)	418, 458, 466
Cfr13I	GGNCC	4 cut(s)	78, 408, 504, 631
CseI	GACGC	1 cut(s)	287
CspAI	ACCGGT	3 cut(s)	418, 458, 466
CviAII	CATG	2 cut(s)	396, 451
DdeI	CTNAG	3 cut(s)	150, 285, 404
DpnI	GATC	2 cut(s)	309, 330
DpnII	GATC	2 cut(s)	307, 328
Eco47I	GGWCC	3 cut(s)	78, 504, 631
Eco57I	CTGAAG	1 cut(s)	669
Eco81I	CCTNAGG	1 cut(s)	285
EcoRII	CCWGG	3 cut(s)	135, 410, 530
FaeI	CATG	2 cut(s)	399, 454
FaiI	YATR	7 cut(s)	62, 397, 452, 480, 525, 549, 643
FatI	CATG	2 cut(s)	395, 450
FauI	CCCGC	1 cut(s)	355
Fnu4HI	GCNGC	6 cut(s)	147, 221, 342, 351, 360, 476
FokI	GGATG	2 cut(s)	239, 548
Fsp4HI	GCNGC	6 cut(s)	147, 221, 342, 351, 360, 476
FspBI	CTAG	3 cut(s)	444, 516, 763
GluI	GCNGC	6 cut(s)	147, 221, 342, 351, 360, 476
GsaI	CCCAGC	1 cut(s)	500
GsuI	CTGGAG	1 cut(s)	514
HaeIII	GGCC	2 cut(s)	5, 409
HapII	CCGG	5 cut(s)	256, 419, 459, 467, 491
HgaI	GACGC	1 cut(s)	287
Hin1II	CATG	2 cut(s)	399, 454
HindIII	AAGCTT	1 cut(s)	671
HinfI	GANTC	3 cut(s)	140, 400, 610
HpaII	CCGG	5 cut(s)	256, 419, 459, 467, 491
HphI	GGTGA	3 cut(s)	15, 301, 433
Hpy166II	GTNNAC	3 cut(s)	36, 250, 464
Hpy188I	TCNGA	6 cut(s)	172, 214, 325, 405, 579, 688
Hpy188III	TCNNGA	2 cut(s)	507, 543
Hpy8I	GTNNAC	3 cut(s)	36, 250, 464
Hpy99I	CGWCG	1 cut(s)	281
HpyAV	CCTTC	4 cut(s)	238, 362, 376, 656
HpyCH4IV	ACGT	1 cut(s)	94
HpyCH4V	TGCA	2 cut(s)	464, 754
HpyF10VI	GCNNNNNNNGC	6 cut(s)	111, 341, 347, 350, 356, 359
HpyF3I	CTNAG	3 cut(s)	150, 285, 404
HpySE526I	ACGT	1 cut(s)	94
Hsp92II	CATG	2 cut(s)	399, 454
Kzo9I	GATC	2 cut(s)	307, 328
LmnI	GCTCC	3 cut(s)	286, 493, 715
Lsp1109I	GCAGC	5 cut(s)	158, 328, 337, 346, 487
LweI	GCATC	1 cut(s)	670
MaeI	CTAG	3 cut(s)	444, 516, 763
MaeII	ACGT	1 cut(s)	94
MaeIII	GTNAC	3 cut(s)	21, 95, 708
MalI	GATC	2 cut(s)	309, 330
MboI	GATC	2 cut(s)	307, 328
MboII	GAAGA	3 cut(s)	436, 466, 711
MfeI	CAATTG	1 cut(s)	620
MhlI	GDGCHC	1 cut(s)	466
MluCI	AATT	2 cut(s)	238, 620
MlyI	GAGTC	1 cut(s)	134
MmeI	TCCRAC	1 cut(s)	195
MroXI	GAANNNNTTC	1 cut(s)	584
MseI	TTAA	3 cut(s)	675, 728, 743
MspA1I	CMGCKG	2 cut(s)	149, 558
MspI	CCGG	5 cut(s)	256, 419, 459, 467, 491
MspR9I	CCNGG	4 cut(s)	137, 412, 491, 532
MunI	CAATTG	1 cut(s)	620
MvaI	CCWGG	3 cut(s)	137, 412, 532
MwoI	GCNNNNNNNGC	6 cut(s)	111, 341, 347, 350, 356, 359
NciI	CCSGG	1 cut(s)	491
NdeII	GATC	2 cut(s)	307, 328
NlaIII	CATG	2 cut(s)	399, 454
NmeAIII	GCCGAG	1 cut(s)	122
NmuCI	GTSAC	2 cut(s)	21, 95
PdmI	GAANNNNTTC	1 cut(s)	584
PfeI	GAWTC	2 cut(s)	400, 610
PflMI	CCANNNNNTGG	2 cut(s)	33, 605
PfoI	TCCNGGA	1 cut(s)	489
PinAI	ACCGGT	3 cut(s)	418, 458, 466
PkrI	GCNGC	6 cut(s)	148, 222, 343, 352, 361, 477
PleI	GAGTC	1 cut(s)	134
PpsI	GAGTC	1 cut(s)	134
Psp6I	CCWGG	3 cut(s)	135, 410, 530
PspFI	CCCAGC	1 cut(s)	496
PspGI	CCWGG	3 cut(s)	135, 410, 530
PspPI	GGNCC	4 cut(s)	78, 408, 504, 631
PvuII	CAGCTG	1 cut(s)	149
SaqAI	TTAA	3 cut(s)	675, 728, 743
SatI	GCNGC	6 cut(s)	147, 221, 342, 351, 360, 476
Sau3AI	GATC	2 cut(s)	307, 328
Sau96I	GGNCC	4 cut(s)	78, 408, 504, 631
SchI	GAGTC	1 cut(s)	134
ScrFI	CCNGG	4 cut(s)	137, 412, 491, 532
SduI	GDGCHC	1 cut(s)	466
SfaNI	GCATC	1 cut(s)	670
SgrAI	CRCCGGYG	1 cut(s)	466
SinI	GGWCC	3 cut(s)	78, 504, 631
SmlI	CTYRAG	2 cut(s)	260, 614
SmoI	CTYRAG	2 cut(s)	260, 614
Sse9I	AATT	2 cut(s)	238, 620
SsiI	CCGC	3 cut(s)	221, 362, 558
SspMI	CTAG	3 cut(s)	444, 516, 763
StyD4I	CCNGG	4 cut(s)	135, 410, 489, 530
TaiI	ACGT	1 cut(s)	97
TaqII	GACCGA	1 cut(s)	492
TasI	AATT	2 cut(s)	238, 620
TauI	GCSGC	1 cut(s)	223
TfiI	GAWTC	2 cut(s)	400, 610
Tru1I	TTAA	3 cut(s)	675, 728, 743
Tru9I	TTAA	3 cut(s)	675, 728, 743
TscAI	CASTG	1 cut(s)	181
TseFI	GTSAC	2 cut(s)	21, 95
TseI	GCWGC	5 cut(s)	146, 341, 350, 359, 475
Tsp45I	GTSAC	2 cut(s)	21, 95
TspDTI	ATGAA	4 cut(s)	132, 467, 630, 748
TspRI	CASTG	1 cut(s)	181
Van91I	CCANNNNNTGG	2 cut(s)	33, 605
VneI	GTGCAC	1 cut(s)	462
VpaK11BI	GGWCC	3 cut(s)	78, 504, 631
XapI	RAATTY	1 cut(s)	238
XmnI	GAANNNNTTC	1 cut(s)	584
XspI	CTAG	3 cut(s)	444, 516, 763

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.