Rmu_sc0006463.1_g000004

polyribonucleotide nucleotidyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006463.1
OG0014795
Physical Location & Seq
Forward (+)
30218 .. 37344
7127 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0006463.1_g000004.1.cds

Sequence Viewer

Length: 1005 bp
atggcttcctcctcgtctgtgtcacccaataagtggacttcccagacccccaaccctgacatatcggggttgaaatggaccaagaaaaactcacgtcactctcgccagttgggcaatgaaccccaactccccaaccatgactcggcagctgagctacctgaccacaactccgacactggggaaaacgtcattgaccagaacgaagtcttgtccgaacagccgcaccccaagaaaccaaatttgaaggtttacattcggctcaagctggacaaagacgacgctcctcaggtgaaaaaagaagcagaggatcaaaaccctaaatctgatgatcctgctgttgctgctttggctgctttagctgcgggggaaggattggcggagaagaggaacaaaacatggaatctgaggcccaggaaaccggtgaagaagcctaatggggaggatagtgccatgaagaccggtgcaccggtggggcagcataacgaaatcccggagctgggtcggtccagactggctagaggttgtcaaacgaaaaaacctaaggagccgaggatggagatatcgcttacattgaccaaagaggagattgagaaagatcttttactcttgacagggaagaagccatcgcgccggcccaagaggaggcctaggagtctgcagaagcagctggatgtacttttgtccctcctcattcccagaaagaatcgcaaggcatttggcatcagagctttgaccgacgccggagctgctacggcggttaatgttactcagccttgttccgtcaaaatcctcgttggtgataggcacattttgattgagacaggtcatattgggagacaagccagtggttctcttaccgtcatagatggagaaactgttatagtcgagcatttgtcagttgaggaaatagctggcataaaggaggcatttcaattgatggataatgacaacaaaggcaaggtatctctggatcagcttctaaatggaatacaagagctcggctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000175 GO:0003674 GO:0003824 GO:0004518 GO:0004527 GO:0004532 GO:0004540 GO:0004654 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006109 GO:0006139 GO:0006396 GO:0006401 GO:0006629 GO:0006720 GO:0006721 GO:0006725 GO:0006778 GO:0006779 GO:0006807 GO:0006950 GO:0007154 GO:0008150 GO:0008152 GO:0008299 GO:0008408 GO:0008610 GO:0009056 GO:0009057 GO:0009058 GO:0009267 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009605 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0009991 GO:0010322 GO:0010323 GO:0010467 GO:0010563 GO:0010565 GO:0010675 GO:0010677 GO:0015994 GO:0015995 GO:0016036 GO:0016070 GO:0016108 GO:0016109 GO:0016114 GO:0016116 GO:0016117 GO:0016119 GO:0016120 GO:0016122 GO:0016123 GO:0016740 GO:0016772 GO:0016779 GO:0016787 GO:0016788 GO:0016796 GO:0016896 GO:0018130 GO:0019216 GO:0019220 GO:0019222 GO:0019438 GO:0019439 GO:0019747 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031425 GO:0031667 GO:0031668 GO:0031669 GO:0033013 GO:0033014 GO:0033554 GO:0034641 GO:0034655 GO:0042214 GO:0042440 GO:0042594 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044255 GO:0044260 GO:0044265 GO:0044270 GO:0044271 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045827 GO:0045833 GO:0045912 GO:0045936 GO:0046148 GO:0046246 GO:0046483 GO:0046700 GO:0046890 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051055 GO:0051174 GO:0051186 GO:0051188 GO:0051716 GO:0062012 GO:0062014 GO:0065007 GO:0071071 GO:0071072 GO:0071496 GO:0071704 GO:0080090 GO:0090304 GO:0090305 GO:0090501 GO:0090503 GO:0140098 GO:1901360 GO:1901361 GO:1901362 GO:1901564 GO:1901566 GO:1901575 GO:1901576 GO:1903725 GO:1903726
KEGG Pathways
Metabolic & Signaling
ko00230 ko00240 ko03018 map00230 map00240 map03018
Pfam Domains
Protein Families
KH_1 PNPase RNase_PH RNase_PH_C S1

Protein Analysis

334

Amino Acids

36.69

Weight (kDa)

9.38

Isoelectric Point (pI)

42.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 33
AccII CGCG 1 cut(s) 628
AciI CCGC 4 cut(s) 221, 362, 377, 755
AclWI GGATC 3 cut(s) 315, 323, 978
AcsI RAATTY 1 cut(s) 238
AcyI GRCGYC 1 cut(s) 738
AfaI GTAC 1 cut(s) 675
AfiI CCNNNNNNNGG 6 cut(s) 33, 142, 177, 496, 497, 642
AgeI ACCGGT 3 cut(s) 418, 458, 466
AgsI TTSAA 3 cut(s) 73, 244, 932
AjiI CACGTC 1 cut(s) 95
AjnI CCWGG 1 cut(s) 410
AloI GAACNNNNNNTCC 2 cut(s) 111, 143
Alw21I GWGCWC 2 cut(s) 466, 999
Alw26I GTCTC 2 cut(s) 812, 829
Alw44I GTGCAC 1 cut(s) 462
AlwI GGATC 3 cut(s) 315, 323, 978
AoxI GGCC 3 cut(s) 407, 632, 644
ApaLI GTGCAC 1 cut(s) 462
ApeKI GCWGC 7 cut(s) 146, 341, 350, 359, 475, 664, 746
ApoI RAATTY 1 cut(s) 238
AsiGI ACCGGT 3 cut(s) 418, 458, 466
AspA2I CCTAGG 1 cut(s) 647
AspLEI GCGC 1 cut(s) 630
AspS9I GGNCC 4 cut(s) 78, 408, 504, 633
AsuC2I CCSGG 1 cut(s) 491
AsuHPI GGTGA 4 cut(s) 15, 301, 433, 809
AvaII GGWCC 2 cut(s) 78, 504
AvrII CCTAGG 1 cut(s) 647
AxyI CCTNAGG 2 cut(s) 285, 540
BaeGI GKGCMC 1 cut(s) 466
BanII GRGCYC 1 cut(s) 999
BbsI GAAGAC 1 cut(s) 461
Bbv12I GWGCWC 2 cut(s) 466, 999
BbvI GCAGC 7 cut(s) 158, 328, 337, 346, 487, 676, 733
BccI CCATC 4 cut(s) 547, 631, 860, 931
BceAI ACGGC 1 cut(s) 768
BciT130I CCWGG 1 cut(s) 412
BcnI CCSGG 1 cut(s) 491
BcoDI GTCTC 2 cut(s) 812, 829
BfaI CTAG 3 cut(s) 516, 648, 1003
BfmI CTRYAG 1 cut(s) 656
BglI GCCNNNNNGGC 1 cut(s) 111
BglII AGATCT 1 cut(s) 595
BisI GCNGC 8 cut(s) 147, 221, 342, 351, 360, 476, 665, 747
BlnI CCTAGG 1 cut(s) 647
BlpI GCTNAGC 1 cut(s) 150
BlsI GCNGC 8 cut(s) 148, 222, 343, 352, 361, 477, 666, 748
Bme1390I CCNGG 2 cut(s) 412, 491
Bme18I GGWCC 2 cut(s) 78, 504
BmgBI CACGTC 1 cut(s) 95
BmgT120I GGNCC 4 cut(s) 78, 408, 504, 633
BmiI GGNNCC 1 cut(s) 546
BmrFI CCNGG 2 cut(s) 412, 491
BmrI ACTGGG 1 cut(s) 186
BmsI GCATC 1 cut(s) 729
BmuI ACTGGG 1 cut(s) 186
BpiI GAAGAC 1 cut(s) 461
Bpu1102I GCTNAGC 1 cut(s) 150
BpuEI CTTGAG 1 cut(s) 245
BpuMI CCSGG 1 cut(s) 491
BsaHI GRCGYC 1 cut(s) 738
BsaJI CCNNGG 3 cut(s) 410, 548, 647
BsaWI WCCGGW 3 cut(s) 418, 458, 466
BsaXI ACNNNNNCTCC 6 cut(s) 111, 141, 152, 182, 861, 891
Bsc4I CCNNNNNNNGG 6 cut(s) 33, 142, 177, 496, 497, 642
Bse118I RCCGGY 4 cut(s) 418, 458, 466, 630
Bse1I ACTGG 4 cut(s) 106, 181, 516, 843
Bse21I CCTNAGG 2 cut(s) 285, 540
Bse3DI GCAATG 1 cut(s) 121
BseBI CCWGG 1 cut(s) 412
BseDI CCNNGG 3 cut(s) 410, 548, 647
BseGI GGATG 2 cut(s) 558, 676
BseLI CCNNNNNNNGG 6 cut(s) 33, 142, 177, 496, 497, 642
BseMI GCAATG 1 cut(s) 121
BseMII CTCAG 4 cut(s) 141, 299, 395, 782
BseNI ACTGG 4 cut(s) 106, 181, 516, 843
BseRI GAGGAG 4 cut(s) 273, 596, 655, 677
BseSI GKGCMC 1 cut(s) 466
BseXI GCAGC 7 cut(s) 158, 328, 337, 346, 487, 676, 733
BseYI CCCAGC 1 cut(s) 496
Bsh1236I CGCG 1 cut(s) 628
BshFI GGCC 3 cut(s) 409, 634, 646
BshTI ACCGGT 3 cut(s) 418, 458, 466
BsiHKAI GWGCWC 2 cut(s) 466, 999
BsiSI CCGG 6 cut(s) 419, 459, 467, 491, 631, 741
BslFI GGGAC 1 cut(s) 667
BslI CCNNNNNNNGG 6 cut(s) 33, 142, 177, 496, 497, 642
BsmAI GTCTC 2 cut(s) 812, 829
BsmFI GGGAC 1 cut(s) 667
BsnI GGCC 3 cut(s) 409, 634, 646
Bsp1286I GDGCHC 2 cut(s) 466, 999
Bsp143I GATC 4 cut(s) 307, 328, 595, 970
Bsp1720I GCTNAGC 1 cut(s) 150
BspACI CCGC 4 cut(s) 221, 362, 377, 755
BspANI GGCC 3 cut(s) 409, 634, 646
BspCNI CTCAG 4 cut(s) 142, 298, 396, 781
BspFNI CGCG 1 cut(s) 628
BspLI GGNNCC 1 cut(s) 546
BspMAI CTGCAG 1 cut(s) 660
BspPI GGATC 3 cut(s) 315, 323, 978
BsrDI GCAATG 1 cut(s) 121
BsrFI RCCGGY 4 cut(s) 418, 458, 466, 630
BsrI ACTGG 4 cut(s) 106, 181, 516, 843
BssAI RCCGGY 4 cut(s) 418, 458, 466, 630
BssECI CCNNGG 3 cut(s) 410, 548, 647
BssMI GATC 4 cut(s) 307, 328, 595, 970
BssNI GRCGYC 1 cut(s) 738
BssT1I CCWWGG 1 cut(s) 647
Bst2UI CCWGG 1 cut(s) 412
Bst4CI ACNGT 2 cut(s) 859, 877
Bst6I CTCTTC 1 cut(s) 377
BstACI GRCGYC 1 cut(s) 738
BstC8I GCNNGC 2 cut(s) 632, 913
BstDEI CTNAG 5 cut(s) 150, 285, 404, 540, 768
BstF5I GGATG 2 cut(s) 558, 676
BstFNI CGCG 1 cut(s) 628
BstHHI GCGC 1 cut(s) 630
BstKTI GATC 4 cut(s) 310, 331, 598, 973
BstMAI GTCTC 2 cut(s) 812, 829
BstMBI GATC 4 cut(s) 307, 328, 595, 970
BstMWI GCNNNNNNNGC 9 cut(s) 111, 341, 347, 350, 356, 359, 664, 746, 752
BstNI CCWGG 1 cut(s) 412
BstSCI CCNGG 2 cut(s) 410, 489
BstSFI CTRYAG 1 cut(s) 656
BstSLI GKGCMC 1 cut(s) 466
BstUI CGCG 1 cut(s) 628
BstV1I GCAGC 7 cut(s) 158, 328, 337, 346, 487, 676, 733
BstV2I GAAGAC 1 cut(s) 461
BstX2I RGATCY 1 cut(s) 595
BstYI RGATCY 1 cut(s) 595
Bsu36I CCTNAGG 2 cut(s) 285, 540
BsuRI GGCC 3 cut(s) 409, 634, 646
BtgZI GCGATG 1 cut(s) 609
BtrI CACGTC 1 cut(s) 95
BtsCI GGATG 2 cut(s) 558, 676
BtsIMutI CAGTG 2 cut(s) 174, 850
Cac8I GCNNGC 2 cut(s) 632, 913
CfoI GCGC 1 cut(s) 630
Cfr10I RCCGGY 4 cut(s) 418, 458, 466, 630
Cfr13I GGNCC 4 cut(s) 78, 408, 504, 633
CseI GACGC 2 cut(s) 287, 746
Csp6I GTAC 1 cut(s) 674
CspAI ACCGGT 3 cut(s) 418, 458, 466
CviAII CATG 3 cut(s) 137, 396, 451
CviQI GTAC 1 cut(s) 674
DdeI CTNAG 5 cut(s) 150, 285, 404, 540, 768
DpnI GATC 4 cut(s) 309, 330, 597, 972
DpnII GATC 4 cut(s) 307, 328, 595, 970
Eam1104I CTCTTC 1 cut(s) 377
EarI CTCTTC 1 cut(s) 377
EciI GGCGGA 1 cut(s) 392
Ecl136II GAGCTC 1 cut(s) 997
Eco130I CCWWGG 1 cut(s) 647
Eco147I AGGCCT 1 cut(s) 646
Eco24I GRGCYC 1 cut(s) 999
Eco32I GATATC 1 cut(s) 561
Eco47I GGWCC 2 cut(s) 78, 504
Eco53kI GAGCTC 1 cut(s) 997
Eco81I CCTNAGG 2 cut(s) 285, 540
EcoICRI GAGCTC 1 cut(s) 997
EcoRII CCWGG 1 cut(s) 410
EcoRV GATATC 1 cut(s) 561
EcoT14I CCWWGG 1 cut(s) 647
EcoT38I GRGCYC 1 cut(s) 999
ErhI CCWWGG 1 cut(s) 647
FaeI CATG 3 cut(s) 140, 399, 454
FaiI YATR 9 cut(s) 62, 138, 397, 452, 480, 828, 863, 881, 917
FaqI GGGAC 1 cut(s) 667
FatI CATG 3 cut(s) 136, 395, 450
FauI CCCGC 1 cut(s) 355
Fnu4HI GCNGC 8 cut(s) 147, 221, 342, 351, 360, 476, 665, 747
FokI GGATG 2 cut(s) 565, 683
FriOI GRGCYC 1 cut(s) 999
Fsp4HI GCNGC 8 cut(s) 147, 221, 342, 351, 360, 476, 665, 747
FspBI CTAG 3 cut(s) 516, 648, 1003
GlaI GCGC 1 cut(s) 629
GluI GCNGC 8 cut(s) 147, 221, 342, 351, 360, 476, 665, 747
GsaI CCCAGC 1 cut(s) 500
HaeIII GGCC 3 cut(s) 409, 634, 646
HapII CCGG 6 cut(s) 419, 459, 467, 491, 631, 741
HgaI GACGC 2 cut(s) 287, 746
HhaI GCGC 1 cut(s) 630
Hin1I GRCGYC 1 cut(s) 738
Hin1II CATG 3 cut(s) 140, 399, 454
Hin6I GCGC 1 cut(s) 628
HinP1I GCGC 1 cut(s) 628
HinfI GANTC 4 cut(s) 140, 400, 652, 703
HpaII CCGG 6 cut(s) 419, 459, 467, 491, 631, 741
HphI GGTGA 4 cut(s) 15, 301, 433, 809
Hpy166II GTNNAC 3 cut(s) 36, 250, 464
Hpy188I TCNGA 5 cut(s) 172, 214, 325, 405, 725
Hpy188III TCNNGA 3 cut(s) 507, 607, 968
Hpy8I GTNNAC 3 cut(s) 36, 250, 464
Hpy99I CGWCG 2 cut(s) 281, 740
HpyAV CCTTC 2 cut(s) 238, 362
HpyCH4III ACNGT 2 cut(s) 859, 877
HpyCH4IV ACGT 2 cut(s) 94, 186
HpyCH4V TGCA 2 cut(s) 464, 658
HpyF10VI GCNNNNNNNGC 9 cut(s) 111, 341, 347, 350, 356, 359, 664, 746, 752
HpyF3I CTNAG 5 cut(s) 150, 285, 404, 540, 768
HpySE526I ACGT 2 cut(s) 94, 186
Hsp92I GRCGYC 1 cut(s) 738
Hsp92II CATG 3 cut(s) 140, 399, 454
HspAI GCGC 1 cut(s) 628
KroI GCCGGC 1 cut(s) 630
KroNI GCCGGC 1 cut(s) 632
Kzo9I GATC 4 cut(s) 307, 328, 595, 970
LmnI GCTCC 4 cut(s) 286, 493, 544, 743
Lsp1109I GCAGC 7 cut(s) 158, 328, 337, 346, 487, 676, 733
LweI GCATC 1 cut(s) 729
MaeI CTAG 3 cut(s) 516, 648, 1003
MaeII ACGT 2 cut(s) 94, 186
MaeIII GTNAC 3 cut(s) 21, 95, 763
MalI GATC 4 cut(s) 309, 330, 597, 972
MboI GATC 4 cut(s) 307, 328, 595, 970
MboII GAAGA 4 cut(s) 394, 436, 466, 628
MfeI CAATTG 1 cut(s) 932
MflI RGATCY 1 cut(s) 595
MhlI GDGCHC 2 cut(s) 466, 999
MluCI AATT 2 cut(s) 238, 932
MlyI GAGTC 2 cut(s) 134, 661
MmeI TCCRAC 1 cut(s) 195
MroNI GCCGGC 1 cut(s) 630
MseI TTAA 1 cut(s) 759
MspA1I CMGCKG 2 cut(s) 149, 667
MspI CCGG 6 cut(s) 419, 459, 467, 491, 631, 741
MspR9I CCNGG 2 cut(s) 412, 491
MunI CAATTG 1 cut(s) 932
MvaI CCWGG 1 cut(s) 412
MvnI CGCG 1 cut(s) 628
MwoI GCNNNNNNNGC 9 cut(s) 111, 341, 347, 350, 356, 359, 664, 746, 752
NaeI GCCGGC 1 cut(s) 632
NciI CCSGG 1 cut(s) 491
NdeII GATC 4 cut(s) 307, 328, 595, 970
NgoMIV GCCGGC 1 cut(s) 630
NlaIII CATG 3 cut(s) 140, 399, 454
NlaIV GGNNCC 1 cut(s) 546
NmeAIII GCCGAG 3 cut(s) 122, 573, 978
NmuCI GTSAC 2 cut(s) 21, 95
PceI AGGCCT 1 cut(s) 646
PdiI GCCGGC 1 cut(s) 632
PfeI GAWTC 2 cut(s) 400, 703
PflMI CCANNNNNTGG 1 cut(s) 33
PfoI TCCNGGA 1 cut(s) 489
PinAI ACCGGT 3 cut(s) 418, 458, 466
PkrI GCNGC 8 cut(s) 148, 222, 343, 352, 361, 477, 666, 748
PleI GAGTC 2 cut(s) 134, 660
PpsI GAGTC 2 cut(s) 134, 660
Psp124BI GAGCTC 1 cut(s) 999
Psp6I CCWGG 1 cut(s) 410
PspFI CCCAGC 1 cut(s) 496
PspGI CCWGG 1 cut(s) 410
PspN4I GGNNCC 1 cut(s) 546
PspPI GGNCC 4 cut(s) 78, 408, 504, 633
PstI CTGCAG 1 cut(s) 660
PsuI RGATCY 1 cut(s) 595
PvuII CAGCTG 2 cut(s) 149, 667
RsaI GTAC 1 cut(s) 675
RsaNI GTAC 1 cut(s) 674
SacI GAGCTC 1 cut(s) 999
SaqAI TTAA 1 cut(s) 759
SatI GCNGC 8 cut(s) 147, 221, 342, 351, 360, 476, 665, 747
Sau3AI GATC 4 cut(s) 307, 328, 595, 970
Sau96I GGNCC 4 cut(s) 78, 408, 504, 633
SchI GAGTC 2 cut(s) 134, 661
ScrFI CCNGG 2 cut(s) 412, 491
SduI GDGCHC 2 cut(s) 466, 999
SfaNI GCATC 1 cut(s) 729
SfcI CTRYAG 1 cut(s) 656
SgrAI CRCCGGYG 1 cut(s) 466
SinI GGWCC 2 cut(s) 78, 504
SmlI CTYRAG 1 cut(s) 260
SmoI CTYRAG 1 cut(s) 260
Sse9I AATT 2 cut(s) 238, 932
SseBI AGGCCT 1 cut(s) 646
SsiI CCGC 4 cut(s) 221, 362, 377, 755
SspMI CTAG 3 cut(s) 516, 648, 1003
SstI GAGCTC 1 cut(s) 999
StuI AGGCCT 1 cut(s) 646
StyD4I CCNGG 2 cut(s) 410, 489
StyI CCWWGG 1 cut(s) 647
TaaI ACNGT 2 cut(s) 859, 877
TaiI ACGT 2 cut(s) 97, 189
TaqI TCGA 1 cut(s) 885
TaqII GACCGA 2 cut(s) 492, 749
TasI AATT 2 cut(s) 238, 932
TatI WGTACW 1 cut(s) 673
TauI GCSGC 1 cut(s) 223
TfiI GAWTC 2 cut(s) 400, 703
Tru1I TTAA 1 cut(s) 759
Tru9I TTAA 1 cut(s) 759
TscAI CASTG 2 cut(s) 181, 850
TseFI GTSAC 2 cut(s) 21, 95
TseI GCWGC 7 cut(s) 146, 341, 350, 359, 475, 664, 746
Tsp45I GTSAC 2 cut(s) 21, 95
TspDTI ATGAA 2 cut(s) 132, 467
TspGWI ACGGA 1 cut(s) 769
TspRI CASTG 2 cut(s) 181, 850
Van91I CCANNNNNTGG 1 cut(s) 33
VneI GTGCAC 1 cut(s) 462
VpaK11BI GGWCC 2 cut(s) 78, 504
XapI RAATTY 1 cut(s) 238
XmaJI CCTAGG 1 cut(s) 647
XspI CTAG 3 cut(s) 516, 648, 1003
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.