Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0014795

Physical Location & Seq

Genomic Coordinates Reverse (-)

18220706 .. 18222646

Gene Structure 1941 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G125500.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 903 bp

ATGGTGTTCAATTCAGTCTCTTCCCAACCCGAAACCATATCCGAGCCCGACCCGAAACCCGATTCCATGGCCTCCACTGTGCCTTCCAAGTCTCTTGTCCACCAAGCCCAAGACCATGGCCTCCCTTTGCCCCAGTTGAAATGGGCCATGAGCAACAACACCACCACCACCAAAAGCAACGAAAACAACAAGACCAGCACGAAATGCAGCGGAAATAACAACCCTTCTCTGCAACTGAGCAGCAACACCAAACTCGGACAGTTTGACCGGGTAGCTAAGCAGCCCGAGCCCAAGTCCTCCAATGTCGAAAAAGAAGCCGACCCAATTCCCGCCACGGAAGTGATCGACGGCCCGGAGACCCAGAAGCCAAAATCGACTGCTGAGGATAAGAAATCGAAGATTTGCATCCGGATTCGGAGCAAAGAAAAGGCTGCTGTAGTGCCTGAGCCTGAACCTGAACCTGAACCGGAAAATGAAAAAGAGAGCTCTGTTGCTGCTGCTTTAGCAGCGCTGGAGGATGAAGAGACGATTCAGAAGACTTGGAATCTCAGGCCCAGGAGACCGGTGCCTAAGGCCAATGGTCGTGCTGGTGCATTGAAGACTGGTGCACCGCTGGTGCAGCAGAACAAAACCGAGGCGGCTGGGGGCTCTTCTAAAGCTGGAGGCAAAGGTGCTCAAAAGAAGGACAATAAACTGAAGATATCGGTTTCTTTAACAAAAGAAGAGATTGAGGAGGACATTTTTATTATGACTGGAGCCAGGCCATCCAGGCGCCCAAAGAAGAGAGCTAAGAATGTGCAGAAACAGCTTGATGTCTGTATTGTTGAATTTAATTTGAGTTTTTTTATATATTTTTTATTTATTTTTTATAGCTGGGGTTGGTTAATTTTAAAACGTTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1639

Protein Analysis

301

Amino Acids

33.08

Weight (kDa)

9.3

Isoelectric Point (pI)

54.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014795)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g09720
prunus_persica	Prupe.2G125500_v2.0.a1 Prupe.2G125500_v2.0.a1 Prupe.2G125500_v2.0.a1 Prupe.2G125500_v2.0.a1 Prupe.2G125500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0346661
rosa_laevigata	RLG00000028787
rosa_multiflora	Rmu_sc0002640.1_g000023 Rmu_sc0006463.1_g000004
rosa_roxburghii	Rroxscaffold_4G00308340
rosa_rugosa	Rorug01G0182100
rosa_samantha	Rh1AG200800 Rh1BG167100 Rh1CG185700 Rh1DG197900
rosa_wichuraiana	Rw1G016830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	565, 771
AccIII	TCCGGA	1 cut(s)	408
AciI	CCGC	4 cut(s)	210, 330, 611, 638
AclI	AACGTT	1 cut(s)	895
AcsI	RAATTY	1 cut(s)	827
AcuI	CTGAAG	1 cut(s)	716
AcyI	GRCGYC	1 cut(s)	772
AfeI	AGCGCT	1 cut(s)	510
AgeI	ACCGGT	1 cut(s)	562
AgsI	TTSAA	4 cut(s)	10, 139, 598, 827
AjnI	CCWGG	3 cut(s)	554, 758, 767
AleI	CACNNNNGTG	1 cut(s)	338
AluBI	AGCT	6 cut(s)	275, 486, 659, 788, 808, 873
AluI	AGCT	6 cut(s)	275, 486, 659, 788, 808, 873
Alw21I	GWGCWC	3 cut(s)	488, 610, 676
Alw26I	GTCTC	5 cut(s)	22, 96, 350, 518, 553
Alw44I	GTGCAC	1 cut(s)	606
Ama87I	CYCGRG	1 cut(s)	284
Aor13HI	TCCGGA	1 cut(s)	408
Aor51HI	AGCGCT	1 cut(s)	510
AoxI	GGCC	7 cut(s)	69, 118, 144, 349, 551, 573, 761
ApaLI	GTGCAC	1 cut(s)	606
ApeKI	GCWGC	8 cut(s)	207, 240, 280, 431, 494, 497, 506, 619
ApoI	RAATTY	1 cut(s)	827
AsiGI	ACCGGT	1 cut(s)	562
AspLEI	GCGC	2 cut(s)	511, 774
AspS9I	GGNCC	3 cut(s)	144, 350, 552
AsuC2I	CCSGG	2 cut(s)	269, 353
AvaI	CYCGRG	1 cut(s)	284
AxyI	CCTNAGG	1 cut(s)	570
BaeGI	GKGCMC	1 cut(s)	610
BanI	GGYRCC	2 cut(s)	565, 771
BanII	GRGCYC	4 cut(s)	48, 291, 488, 650
BbsI	GAAGAC	2 cut(s)	542, 605
Bbv12I	GWGCWC	3 cut(s)	488, 610, 676
BbvCI	CCTCAGC	1 cut(s)	381
BbvI	GCAGC	8 cut(s)	219, 252, 292, 418, 481, 484, 518, 631
BccI	CCATC	1 cut(s)	772
BceAI	ACGGC	1 cut(s)	364
BciT130I	CCWGG	3 cut(s)	556, 760, 769
BcnI	CCSGG	2 cut(s)	269, 353
BcoDI	GTCTC	5 cut(s)	22, 96, 350, 518, 553
BfmI	CTRYAG	1 cut(s)	435
BfoI	RGCGCY	2 cut(s)	512, 775
BglI	GCCNNNNNGGC	1 cut(s)	769
BisI	GCNGC	9 cut(s)	208, 241, 281, 432, 495, 498, 507, 620, 639
BlpI	GCTNAGC	1 cut(s)	276
BlsI	GCNGC	9 cut(s)	209, 242, 282, 433, 496, 499, 508, 621, 640
Bme1390I	CCNGG	5 cut(s)	269, 353, 556, 760, 769
BmeT110I	CYCGRG	1 cut(s)	284
BmgT120I	GGNCC	3 cut(s)	144, 350, 552
BmiI	GGNNCC	3 cut(s)	567, 757, 773
BmrFI	CCNGG	5 cut(s)	269, 353, 556, 760, 769
BmrI	ACTGGG	1 cut(s)	127
BmsI	GCATC	1 cut(s)	414
BmuI	ACTGGG	1 cut(s)	127
BpiI	GAAGAC	2 cut(s)	542, 605
BpmI	CTGGAG	3 cut(s)	533, 681, 774
Bpu10I	CCTNAGC	2 cut(s)	381, 444
Bpu1102I	GCTNAGC	1 cut(s)	276
BpuMI	CCSGG	2 cut(s)	269, 353
BsaBI	GATNNNNATC	1 cut(s)	404
BsaHI	GRCGYC	1 cut(s)	772
BsaI	GGTCTC	2 cut(s)	350, 553
BsaJI	CCNNGG	5 cut(s)	66, 115, 333, 554, 633
BsaWI	WCCGGW	3 cut(s)	408, 466, 562
Bse118I	RCCGGY	1 cut(s)	562
Bse1I	ACTGG	3 cut(s)	133, 607, 757
Bse21I	CCTNAGG	1 cut(s)	570
Bse8I	GATNNNNATC	1 cut(s)	404
BseAI	TCCGGA	1 cut(s)	408
BseBI	CCWGG	3 cut(s)	556, 760, 769
BseDI	CCNNGG	5 cut(s)	66, 115, 333, 554, 633
BseGI	GGATG	3 cut(s)	405, 523, 764
BseJI	GATNNNNATC	1 cut(s)	404
BseMII	CTCAG	4 cut(s)	227, 372, 435, 562
BseNI	ACTGG	3 cut(s)	133, 607, 757
BseRI	GAGGAG	1 cut(s)	746
BseSI	GKGCMC	1 cut(s)	610
BseXI	GCAGC	8 cut(s)	219, 252, 292, 418, 481, 484, 518, 631
BseYI	CCCAGC	2 cut(s)	641, 873
BsgI	GTGCAG	2 cut(s)	638, 818
BshFI	GGCC	7 cut(s)	71, 120, 146, 351, 553, 575, 763
BshNI	GGYRCC	2 cut(s)	565, 771
BshTI	ACCGGT	1 cut(s)	562
BsiHKAI	GWGCWC	3 cut(s)	488, 610, 676
BsiHKCI	CYCGRG	1 cut(s)	284
BsiSI	CCGG	5 cut(s)	268, 353, 409, 467, 563
BsmAI	GTCTC	5 cut(s)	22, 96, 350, 518, 553
BsmBI	CGTCTC	1 cut(s)	518
BsnI	GGCC	7 cut(s)	71, 120, 146, 351, 553, 575, 763
Bso31I	GGTCTC	2 cut(s)	350, 553
BsoBI	CYCGRG	1 cut(s)	284
Bsp1286I	GDGCHC	6 cut(s)	48, 291, 488, 610, 650, 676
Bsp13I	TCCGGA	1 cut(s)	408
Bsp143I	GATC	1 cut(s)	342
Bsp1720I	GCTNAGC	1 cut(s)	276
Bsp19I	CCATGG	2 cut(s)	66, 115
BspACI	CCGC	4 cut(s)	210, 330, 611, 638
BspANI	GGCC	7 cut(s)	71, 120, 146, 351, 553, 575, 763
BspCNI	CTCAG	4 cut(s)	228, 373, 436, 561
BspEI	TCCGGA	1 cut(s)	408
BspLI	GGNNCC	3 cut(s)	567, 757, 773
BspQI	GCTCTTC	1 cut(s)	655
BspT107I	GGYRCC	2 cut(s)	565, 771
BspTNI	GGTCTC	2 cut(s)	350, 553
BsrFI	RCCGGY	1 cut(s)	562
BsrI	ACTGG	3 cut(s)	133, 607, 757
BssAI	RCCGGY	1 cut(s)	562
BssECI	CCNNGG	5 cut(s)	66, 115, 333, 554, 633
BssMI	GATC	1 cut(s)	342
BssNI	GRCGYC	1 cut(s)	772
BssT1I	CCWWGG	2 cut(s)	66, 115
Bst2UI	CCWGG	3 cut(s)	556, 760, 769
Bst4CI	ACNGT	2 cut(s)	79, 261
Bst6I	CTCTTC	5 cut(s)	25, 516, 655, 717, 776
BstACI	GRCGYC	1 cut(s)	772
BstAPI	GCANNNNNTGC	1 cut(s)	204
BstDEI	CTNAG	7 cut(s)	236, 276, 381, 444, 548, 570, 789
BstDSI	CCRYGG	3 cut(s)	66, 115, 333
BstF5I	GGATG	3 cut(s)	405, 523, 764
BstH2I	RGCGCY	2 cut(s)	512, 775
BstHHI	GCGC	2 cut(s)	511, 774
BstKTI	GATC	1 cut(s)	345
BstMAI	GTCTC	5 cut(s)	22, 96, 350, 518, 553
BstMBI	GATC	1 cut(s)	342
BstMWI	GCNNNNNNNGC	7 cut(s)	204, 286, 503, 506, 619, 769, 805
BstNI	CCWGG	3 cut(s)	556, 760, 769
BstSCI	CCNGG	5 cut(s)	267, 351, 554, 758, 767
BstSFI	CTRYAG	1 cut(s)	435
BstSLI	GKGCMC	1 cut(s)	610
BstV1I	GCAGC	8 cut(s)	219, 252, 292, 418, 481, 484, 518, 631
BstV2I	GAAGAC	2 cut(s)	542, 605
BstXI	CCANNNNNNTGG	1 cut(s)	116
Bsu36I	CCTNAGG	1 cut(s)	570
BsuRI	GGCC	7 cut(s)	71, 120, 146, 351, 553, 575, 763
BtgI	CCRYGG	3 cut(s)	66, 115, 333
BtsCI	GGATG	3 cut(s)	405, 523, 764
BtsIMutI	CAGTG	1 cut(s)	75
CfoI	GCGC	2 cut(s)	511, 774
Cfr10I	RCCGGY	1 cut(s)	562
Cfr13I	GGNCC	3 cut(s)	144, 350, 552
CspAI	ACCGGT	1 cut(s)	562
CviAII	CATG	3 cut(s)	67, 116, 148
DdeI	CTNAG	7 cut(s)	236, 276, 381, 444, 548, 570, 789
DinI	GGCGCC	1 cut(s)	773
DpnI	GATC	1 cut(s)	344
DpnII	GATC	1 cut(s)	342
DraI	TTTAAA	1 cut(s)	891
Eam1104I	CTCTTC	5 cut(s)	25, 516, 655, 717, 776
EarI	CTCTTC	5 cut(s)	25, 516, 655, 717, 776
Ecl136II	GAGCTC	1 cut(s)	486
Eco130I	CCWWGG	2 cut(s)	66, 115
Eco24I	GRGCYC	4 cut(s)	48, 291, 488, 650
Eco31I	GGTCTC	2 cut(s)	350, 553
Eco32I	GATATC	1 cut(s)	702
Eco47III	AGCGCT	1 cut(s)	510
Eco53kI	GAGCTC	1 cut(s)	486
Eco57I	CTGAAG	1 cut(s)	716
Eco81I	CCTNAGG	1 cut(s)	570
Eco88I	CYCGRG	1 cut(s)	284
EcoICRI	GAGCTC	1 cut(s)	486
EcoRII	CCWGG	3 cut(s)	554, 758, 767
EcoRV	GATATC	1 cut(s)	702
EcoT14I	CCWWGG	2 cut(s)	66, 115
EcoT38I	GRGCYC	4 cut(s)	48, 291, 488, 650
EgeI	GGCGCC	1 cut(s)	773
EheI	GGCGCC	1 cut(s)	773
ErhI	CCWWGG	2 cut(s)	66, 115
Esp3I	CGTCTC	1 cut(s)	518
FaeI	CATG	3 cut(s)	70, 119, 151
FaiI	YATR	8 cut(s)	38, 68, 117, 149, 749, 848, 850, 870
FatI	CATG	3 cut(s)	66, 115, 147
FauI	CCCGC	1 cut(s)	337
Fnu4HI	GCNGC	9 cut(s)	208, 241, 281, 432, 495, 498, 507, 620, 639
FokI	GGATG	3 cut(s)	392, 530, 751
FriOI	GRGCYC	4 cut(s)	48, 291, 488, 650
Fsp4HI	GCNGC	9 cut(s)	208, 241, 281, 432, 495, 498, 507, 620, 639
GlaI	GCGC	2 cut(s)	510, 773
GluI	GCNGC	9 cut(s)	208, 241, 281, 432, 495, 498, 507, 620, 639
GsaI	CCCAGC	2 cut(s)	645, 877
GsuI	CTGGAG	3 cut(s)	533, 681, 774
HaeII	RGCGCY	2 cut(s)	512, 775
HaeIII	GGCC	7 cut(s)	71, 120, 146, 351, 553, 575, 763
HapII	CCGG	5 cut(s)	268, 353, 409, 467, 563
HhaI	GCGC	2 cut(s)	511, 774
Hin1I	GRCGYC	1 cut(s)	772
Hin1II	CATG	3 cut(s)	70, 119, 151
Hin6I	GCGC	2 cut(s)	509, 772
HinP1I	GCGC	2 cut(s)	509, 772
HinfI	GANTC	4 cut(s)	62, 412, 529, 544
HpaII	CCGG	5 cut(s)	268, 353, 409, 467, 563
Hpy166II	GTNNAC	2 cut(s)	100, 608
Hpy188I	TCNGA	4 cut(s)	43, 257, 417, 534
Hpy188III	TCNNGA	1 cut(s)	409
Hpy8I	GTNNAC	2 cut(s)	100, 608
Hpy99I	CGWCG	1 cut(s)	350
HpyAV	CCTTC	3 cut(s)	93, 234, 676
HpyCH4III	ACNGT	2 cut(s)	79, 261
HpyCH4IV	ACGT	1 cut(s)	895
HpyCH4V	TGCA	7 cut(s)	207, 232, 405, 593, 608, 619, 799
HpyF10VI	GCNNNNNNNGC	7 cut(s)	204, 286, 503, 506, 619, 769, 805
HpyF3I	CTNAG	7 cut(s)	236, 276, 381, 444, 548, 570, 789
HpySE526I	ACGT	1 cut(s)	895
Hsp92I	GRCGYC	1 cut(s)	772
Hsp92II	CATG	3 cut(s)	70, 119, 151
HspAI	GCGC	2 cut(s)	509, 772
KasI	GGCGCC	1 cut(s)	771
Kpn2I	TCCGGA	1 cut(s)	408
Kzo9I	GATC	1 cut(s)	342
LguI	GCTCTTC	1 cut(s)	655
LmnI	GCTCC	2 cut(s)	417, 755
Lsp1109I	GCAGC	8 cut(s)	219, 252, 292, 418, 481, 484, 518, 631
LweI	GCATC	1 cut(s)	414
MaeII	ACGT	1 cut(s)	895
MalI	GATC	1 cut(s)	344
MboI	GATC	1 cut(s)	342
MboII	GAAGA	9 cut(s)	12, 409, 533, 547, 610, 642, 709, 734, 793
MhlI	GDGCHC	6 cut(s)	48, 291, 488, 610, 650, 676
MluCI	AATT	5 cut(s)	10, 324, 827, 832, 885
Mly113I	GGCGCC	1 cut(s)	772
MnlI	CCTC	9 cut(s)	82, 131, 307, 376, 508, 628, 656, 724, 727
MroI	TCCGGA	1 cut(s)	408
MseI	TTAA	4 cut(s)	713, 831, 884, 890
MslI	CAYNNNNRTG	1 cut(s)	338
MspA1I	CMGCKG	2 cut(s)	210, 613
MspI	CCGG	5 cut(s)	268, 353, 409, 467, 563
MspR9I	CCNGG	5 cut(s)	269, 353, 556, 760, 769
MvaI	CCWGG	3 cut(s)	556, 760, 769
MwoI	GCNNNNNNNGC	7 cut(s)	204, 286, 503, 506, 619, 769, 805
NarI	GGCGCC	1 cut(s)	772
NciI	CCSGG	2 cut(s)	269, 353
NcoI	CCATGG	2 cut(s)	66, 115
NdeII	GATC	1 cut(s)	342
NlaIII	CATG	3 cut(s)	70, 119, 151
NlaIV	GGNNCC	3 cut(s)	567, 757, 773
OliI	CACNNNNGTG	1 cut(s)	338
PciSI	GCTCTTC	1 cut(s)	655
PfeI	GAWTC	4 cut(s)	62, 412, 529, 544
PinAI	ACCGGT	1 cut(s)	562
PkrI	GCNGC	9 cut(s)	209, 242, 282, 433, 496, 499, 508, 621, 640
PluTI	GGCGCC	1 cut(s)	775
Psp124BI	GAGCTC	1 cut(s)	488
Psp1406I	AACGTT	1 cut(s)	895
Psp6I	CCWGG	3 cut(s)	554, 758, 767
PspFI	CCCAGC	2 cut(s)	641, 873
PspGI	CCWGG	3 cut(s)	554, 758, 767
PspN4I	GGNNCC	3 cut(s)	567, 757, 773
PspPI	GGNCC	3 cut(s)	144, 350, 552
RseI	CAYNNNNRTG	1 cut(s)	338
SacI	GAGCTC	1 cut(s)	488
SapI	GCTCTTC	1 cut(s)	655
SaqAI	TTAA	4 cut(s)	713, 831, 884, 890
SatI	GCNGC	9 cut(s)	208, 241, 281, 432, 495, 498, 507, 620, 639
Sau3AI	GATC	1 cut(s)	342
Sau96I	GGNCC	3 cut(s)	144, 350, 552
ScrFI	CCNGG	5 cut(s)	269, 353, 556, 760, 769
SduI	GDGCHC	6 cut(s)	48, 291, 488, 610, 650, 676
SfaNI	GCATC	1 cut(s)	414
SfcI	CTRYAG	1 cut(s)	435
SfoI	GGCGCC	1 cut(s)	773
SmiMI	CAYNNNNRTG	1 cut(s)	338
Sse9I	AATT	5 cut(s)	10, 324, 827, 832, 885
SsiI	CCGC	4 cut(s)	210, 330, 611, 638
SspDI	GGCGCC	1 cut(s)	771
SstI	GAGCTC	1 cut(s)	488
StyD4I	CCNGG	5 cut(s)	267, 351, 554, 758, 767
StyI	CCWWGG	2 cut(s)	66, 115
TaaI	ACNGT	2 cut(s)	79, 261
TaiI	ACGT	1 cut(s)	898
TaqI	TCGA	4 cut(s)	306, 345, 374, 395
TasI	AATT	5 cut(s)	10, 324, 827, 832, 885
TauI	GCSGC	1 cut(s)	641
TfiI	GAWTC	4 cut(s)	62, 412, 529, 544
Tru1I	TTAA	4 cut(s)	713, 831, 884, 890
Tru9I	TTAA	4 cut(s)	713, 831, 884, 890
TscAI	CASTG	1 cut(s)	82
TseI	GCWGC	8 cut(s)	207, 240, 280, 431, 494, 497, 506, 619
TspDTI	ATGAA	2 cut(s)	489, 534
TspGWI	ACGGA	1 cut(s)	350
TspRI	CASTG	1 cut(s)	82
VneI	GTGCAC	1 cut(s)	606
XapI	RAATTY	1 cut(s)	827

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.