Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0014795

Physical Location & Seq

Genomic Coordinates Reverse (-)

40603843 .. 40604926

Gene Structure 1084 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG185700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 609 bp

ATGGCCTCCTCCTCGTCTGTGTCACCCAATAAGTGGACTTCCCAGTCCCCCAACCCTGACATATCGGGGTTGAAATGGACCAAGAAAAACTCACGTCACTCTCGCCAGTTGGGCAATGAACCCCAACTCCCCAACCATGACTCGGCAGCTGAGCTACCTGACCACAACTCCGACACTGGGGAAAACCTCATTGACCAGAACGAAGTCTTGTCCGAACAGCCGCACCCCAAGAAACCAAATTTGAAGGTTTACATCCGGCTCAAGCTGGACAAAGACGACTCTCCTCAGGTGCAAAAAAAAGCAGAGGATCAAAACCCTAAATCTGATGATCCTGCTGTTGCTGCTTTGGCTGCTTTAGCTGCGGGGGAAGGATTGGAGGAGAAGGGGAACAAAACATGGAATCTGAGGCCCAGGAAACCGGTGAAGAAGCCTAATGGGGAGGCTAGTGCCATGAAGACCGGTGCACCGGTGGGGCAGCATAACGAAATCCCGGAGCTGGGTCGGTCCAGACTGGCTAGAGAATATAACTCCAGGGATGTATCTGGATATGCTGTCAGCGGAAGCCTACCAGGGTTAGGATGTGGTGATGATTTCGCTCTGAAAATCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1639

Protein Analysis

202

Amino Acids

21.9

Weight (kDa)

7.82

Isoelectric Point (pI)

42.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014795)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g09720
prunus_persica	Prupe.2G125500_v2.0.a1 Prupe.2G125500_v2.0.a1 Prupe.2G125500_v2.0.a1 Prupe.2G125500_v2.0.a1 Prupe.2G125500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0346661
rosa_laevigata	RLG00000028787
rosa_multiflora	Rmu_sc0002640.1_g000023 Rmu_sc0006463.1_g000004
rosa_roxburghii	Rroxscaffold_4G00308340
rosa_rugosa	Rorug01G0182100
rosa_samantha	Rh1AG200800 Rh1BG167100 Rh1CG185700 Rh1DG197900
rosa_wichuraiana	Rw1G016830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	43
AccB7I	CCANNNNNTGG	1 cut(s)	33
AciI	CCGC	3 cut(s)	221, 362, 558
AclWI	GGATC	2 cut(s)	315, 323
AcsI	RAATTY	1 cut(s)	238
AfiI	CCNNNNNNNGG	6 cut(s)	33, 142, 177, 496, 497, 575
AgeI	ACCGGT	3 cut(s)	418, 458, 466
AgsI	TTSAA	2 cut(s)	73, 244
AjiI	CACGTC	1 cut(s)	95
AjnI	CCWGG	3 cut(s)	410, 530, 568
AloI	GAACNNNNNNTCC	2 cut(s)	111, 143
AluBI	AGCT	5 cut(s)	149, 154, 265, 359, 496
AluI	AGCT	5 cut(s)	149, 154, 265, 359, 496
Alw21I	GWGCWC	1 cut(s)	466
Alw44I	GTGCAC	1 cut(s)	462
AlwI	GGATC	2 cut(s)	315, 323
AoxI	GGCC	2 cut(s)	3, 407
ApaLI	GTGCAC	1 cut(s)	462
ApeKI	GCWGC	5 cut(s)	146, 341, 350, 359, 475
ApoI	RAATTY	1 cut(s)	238
AsiGI	ACCGGT	3 cut(s)	418, 458, 466
AspS9I	GGNCC	3 cut(s)	78, 408, 504
AsuC2I	CCSGG	1 cut(s)	491
AsuHPI	GGTGA	3 cut(s)	15, 433, 596
AvaII	GGWCC	2 cut(s)	78, 504
AxyI	CCTNAGG	1 cut(s)	285
BaeGI	GKGCMC	1 cut(s)	466
BbsI	GAAGAC	1 cut(s)	461
Bbv12I	GWGCWC	1 cut(s)	466
BbvI	GCAGC	5 cut(s)	158, 328, 337, 346, 487
BciT130I	CCWGG	3 cut(s)	412, 532, 570
BcnI	CCSGG	1 cut(s)	491
BfaI	CTAG	3 cut(s)	444, 516, 607
BglI	GCCNNNNNGGC	1 cut(s)	111
BisI	GCNGC	6 cut(s)	147, 221, 342, 351, 360, 476
BlpI	GCTNAGC	1 cut(s)	150
BlsI	GCNGC	6 cut(s)	148, 222, 343, 352, 361, 477
Bme1390I	CCNGG	4 cut(s)	412, 491, 532, 570
Bme18I	GGWCC	2 cut(s)	78, 504
BmgBI	CACGTC	1 cut(s)	95
BmgT120I	GGNCC	3 cut(s)	78, 408, 504
BmrFI	CCNGG	4 cut(s)	412, 491, 532, 570
BmrI	ACTGGG	2 cut(s)	37, 186
BmuI	ACTGGG	2 cut(s)	37, 186
BpiI	GAAGAC	1 cut(s)	461
BpmI	CTGGAG	1 cut(s)	514
Bpu1102I	GCTNAGC	1 cut(s)	150
BpuEI	CTTGAG	1 cut(s)	245
BpuMI	CCSGG	1 cut(s)	491
BsaJI	CCNNGG	3 cut(s)	410, 531, 569
BsaWI	WCCGGW	3 cut(s)	418, 458, 466
BsaXI	ACNNNNNCTCC	4 cut(s)	111, 141, 152, 182
Bsc4I	CCNNNNNNNGG	6 cut(s)	33, 142, 177, 496, 497, 575
Bse118I	RCCGGY	3 cut(s)	418, 458, 466
Bse1I	ACTGG	4 cut(s)	43, 106, 181, 516
Bse21I	CCTNAGG	1 cut(s)	285
Bse3DI	GCAATG	1 cut(s)	121
BseBI	CCWGG	3 cut(s)	412, 532, 570
BseDI	CCNNGG	3 cut(s)	410, 531, 569
BseGI	GGATG	3 cut(s)	252, 541, 584
BseLI	CCNNNNNNNGG	6 cut(s)	33, 142, 177, 496, 497, 575
BseMI	GCAATG	1 cut(s)	121
BseMII	CTCAG	3 cut(s)	141, 299, 395
BseNI	ACTGG	4 cut(s)	43, 106, 181, 516
BseRI	GAGGAG	2 cut(s)	273, 392
BseSI	GKGCMC	1 cut(s)	466
BseXI	GCAGC	5 cut(s)	158, 328, 337, 346, 487
BseYI	CCCAGC	1 cut(s)	496
BshFI	GGCC	2 cut(s)	5, 409
BshTI	ACCGGT	3 cut(s)	418, 458, 466
BsiHKAI	GWGCWC	1 cut(s)	466
BsiSI	CCGG	5 cut(s)	256, 419, 459, 467, 491
BslFI	GGGAC	1 cut(s)	31
BslI	CCNNNNNNNGG	6 cut(s)	33, 142, 177, 496, 497, 575
BsmFI	GGGAC	1 cut(s)	31
BsnI	GGCC	2 cut(s)	5, 409
Bsp1286I	GDGCHC	1 cut(s)	466
Bsp143I	GATC	2 cut(s)	307, 328
Bsp1720I	GCTNAGC	1 cut(s)	150
BspACI	CCGC	3 cut(s)	221, 362, 558
BspANI	GGCC	2 cut(s)	5, 409
BspCNI	CTCAG	3 cut(s)	142, 298, 396
BspPI	GGATC	2 cut(s)	315, 323
BsrDI	GCAATG	1 cut(s)	121
BsrFI	RCCGGY	3 cut(s)	418, 458, 466
BsrI	ACTGG	4 cut(s)	43, 106, 181, 516
BssAI	RCCGGY	3 cut(s)	418, 458, 466
BssECI	CCNNGG	3 cut(s)	410, 531, 569
BssMI	GATC	2 cut(s)	307, 328
Bst2UI	CCWGG	3 cut(s)	412, 532, 570
BstDEI	CTNAG	3 cut(s)	150, 285, 404
BstF5I	GGATG	3 cut(s)	252, 541, 584
BstKTI	GATC	2 cut(s)	310, 331
BstMBI	GATC	2 cut(s)	307, 328
BstMWI	GCNNNNNNNGC	6 cut(s)	111, 341, 347, 350, 356, 359
BstNI	CCWGG	3 cut(s)	412, 532, 570
BstSCI	CCNGG	4 cut(s)	410, 489, 530, 568
BstSLI	GKGCMC	1 cut(s)	466
BstV1I	GCAGC	5 cut(s)	158, 328, 337, 346, 487
BstV2I	GAAGAC	1 cut(s)	461
Bsu36I	CCTNAGG	1 cut(s)	285
BsuRI	GGCC	2 cut(s)	5, 409
BtrI	CACGTC	1 cut(s)	95
BtsCI	GGATG	3 cut(s)	252, 541, 584
BtsIMutI	CAGTG	1 cut(s)	174
Cfr10I	RCCGGY	3 cut(s)	418, 458, 466
Cfr13I	GGNCC	3 cut(s)	78, 408, 504
CspAI	ACCGGT	3 cut(s)	418, 458, 466
CviAII	CATG	3 cut(s)	137, 396, 451
DdeI	CTNAG	3 cut(s)	150, 285, 404
DpnI	GATC	2 cut(s)	309, 330
DpnII	GATC	2 cut(s)	307, 328
DrdI	GACNNNNNNGTC	1 cut(s)	43
DseDI	GACNNNNNNGTC	1 cut(s)	43
Eco47I	GGWCC	2 cut(s)	78, 504
Eco81I	CCTNAGG	1 cut(s)	285
EcoRII	CCWGG	3 cut(s)	410, 530, 568
FaeI	CATG	3 cut(s)	140, 399, 454
FaiI	YATR	7 cut(s)	62, 138, 397, 452, 480, 525, 549
FaqI	GGGAC	1 cut(s)	31
FatI	CATG	3 cut(s)	136, 395, 450
FauI	CCCGC	1 cut(s)	355
Fnu4HI	GCNGC	6 cut(s)	147, 221, 342, 351, 360, 476
FokI	GGATG	3 cut(s)	239, 548, 591
Fsp4HI	GCNGC	6 cut(s)	147, 221, 342, 351, 360, 476
FspBI	CTAG	3 cut(s)	444, 516, 607
GluI	GCNGC	6 cut(s)	147, 221, 342, 351, 360, 476
GsaI	CCCAGC	1 cut(s)	500
GsuI	CTGGAG	1 cut(s)	514
HaeIII	GGCC	2 cut(s)	5, 409
HapII	CCGG	5 cut(s)	256, 419, 459, 467, 491
Hin1II	CATG	3 cut(s)	140, 399, 454
HinfI	GANTC	3 cut(s)	140, 278, 400
HpaII	CCGG	5 cut(s)	256, 419, 459, 467, 491
HphI	GGTGA	3 cut(s)	15, 433, 596
Hpy166II	GTNNAC	3 cut(s)	36, 250, 464
Hpy188I	TCNGA	5 cut(s)	172, 214, 325, 405, 600
Hpy188III	TCNNGA	2 cut(s)	507, 543
Hpy8I	GTNNAC	3 cut(s)	36, 250, 464
HpyAV	CCTTC	3 cut(s)	238, 362, 376
HpyCH4IV	ACGT	1 cut(s)	94
HpyCH4V	TGCA	2 cut(s)	292, 464
HpyF10VI	GCNNNNNNNGC	6 cut(s)	111, 341, 347, 350, 356, 359
HpyF3I	CTNAG	3 cut(s)	150, 285, 404
HpySE526I	ACGT	1 cut(s)	94
Hsp92II	CATG	3 cut(s)	140, 399, 454
Kzo9I	GATC	2 cut(s)	307, 328
LmnI	GCTCC	1 cut(s)	493
Lsp1109I	GCAGC	5 cut(s)	158, 328, 337, 346, 487
MaeI	CTAG	3 cut(s)	444, 516, 607
MaeII	ACGT	1 cut(s)	94
MaeIII	GTNAC	2 cut(s)	21, 95
MalI	GATC	2 cut(s)	309, 330
MboI	GATC	2 cut(s)	307, 328
MboII	GAAGA	2 cut(s)	436, 466
MhlI	GDGCHC	1 cut(s)	466
MluCI	AATT	1 cut(s)	238
MlyI	GAGTC	2 cut(s)	134, 272
MmeI	TCCRAC	1 cut(s)	195
MnlI	CCTC	9 cut(s)	16, 19, 22, 197, 294, 298, 370, 399, 433
MspA1I	CMGCKG	2 cut(s)	149, 558
MspI	CCGG	5 cut(s)	256, 419, 459, 467, 491
MspR9I	CCNGG	4 cut(s)	412, 491, 532, 570
MvaI	CCWGG	3 cut(s)	412, 532, 570
MwoI	GCNNNNNNNGC	6 cut(s)	111, 341, 347, 350, 356, 359
NciI	CCSGG	1 cut(s)	491
NdeII	GATC	2 cut(s)	307, 328
NlaIII	CATG	3 cut(s)	140, 399, 454
NmeAIII	GCCGAG	1 cut(s)	122
NmuCI	GTSAC	2 cut(s)	21, 95
PfeI	GAWTC	1 cut(s)	400
PflMI	CCANNNNNTGG	1 cut(s)	33
PfoI	TCCNGGA	1 cut(s)	489
PinAI	ACCGGT	3 cut(s)	418, 458, 466
PkrI	GCNGC	6 cut(s)	148, 222, 343, 352, 361, 477
PleI	GAGTC	2 cut(s)	134, 272
PpsI	GAGTC	2 cut(s)	134, 272
Psp6I	CCWGG	3 cut(s)	410, 530, 568
PspFI	CCCAGC	1 cut(s)	496
PspGI	CCWGG	3 cut(s)	410, 530, 568
PspPI	GGNCC	3 cut(s)	78, 408, 504
PvuII	CAGCTG	1 cut(s)	149
SatI	GCNGC	6 cut(s)	147, 221, 342, 351, 360, 476
Sau3AI	GATC	2 cut(s)	307, 328
Sau96I	GGNCC	3 cut(s)	78, 408, 504
SchI	GAGTC	2 cut(s)	134, 272
ScrFI	CCNGG	4 cut(s)	412, 491, 532, 570
SduI	GDGCHC	1 cut(s)	466
SgrAI	CRCCGGYG	1 cut(s)	466
SinI	GGWCC	2 cut(s)	78, 504
SmlI	CTYRAG	1 cut(s)	260
SmoI	CTYRAG	1 cut(s)	260
Sse9I	AATT	1 cut(s)	238
SsiI	CCGC	3 cut(s)	221, 362, 558
SspMI	CTAG	3 cut(s)	444, 516, 607
StyD4I	CCNGG	4 cut(s)	410, 489, 530, 568
TaiI	ACGT	1 cut(s)	97
TaqII	GACCGA	1 cut(s)	492
TasI	AATT	1 cut(s)	238
TauI	GCSGC	1 cut(s)	223
TfiI	GAWTC	1 cut(s)	400
TscAI	CASTG	1 cut(s)	181
TseFI	GTSAC	2 cut(s)	21, 95
TseI	GCWGC	5 cut(s)	146, 341, 350, 359, 475
Tsp45I	GTSAC	2 cut(s)	21, 95
TspDTI	ATGAA	2 cut(s)	132, 467
TspRI	CASTG	1 cut(s)	181
Van91I	CCANNNNNTGG	1 cut(s)	33
VneI	GTGCAC	1 cut(s)	462
VpaK11BI	GGWCC	2 cut(s)	78, 504
XapI	RAATTY	1 cut(s)	238
XspI	CTAG	3 cut(s)	444, 516, 607

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.