Rh1AG200800

Protein of unknown function (DUF1639)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0014795
Physical Location & Seq
Reverse (-)
38104953 .. 38105846
894 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG200800.1

Sequence Viewer

Length: 738 bp
ATGGCCTCCTCCTCGTCTGTGTCACCCAATAAGTGGACTTCCCAGTCCCCCAACCCTGACATATCGGGGTTGAAATGGACCAAGAAAAACTCACGTCACTCTCGCCAGTTGGGCAATGAACCCCAACTCCCCAACCATGACTCGGCAGCTGAGCTACCTGACCACAACTCCGACACTGGGGAAAACCTCATTGACCAGAACGAAGTCTTGTCCGAACAGCCGCACCCCAAGAAACCAAATTTGAAGGTTTACATCCGGCTCAAGCTGGACAAAGACGACTCTCCTCAGGTGCAAAAAAAAGCAGAGGATCAAAACCCTAAATCTGATGATCCTGCTGTTGCTGCTTTGGCTGCTTTAGCTGCGGGGGAAGGATTGGAGGAGAAGGGGAACAAAACATGGAATCTGAGGCCCAGGAAACCGGTGAAGAAGCCTAATGGGGAGGCTAGTGCCATGAAGACCGGTGCACCGGTGGGGCAGCATAACGAAATCCCGGAGCTGGGTCGGTCCAGACTGGCTAGAGGTTGTCAAACGAAAAAACCTAAGGAGCCGAGGATGGAGATATCGCTTACGTTGACCAAAGAGGAGATTGAGGAGGATCTTTTACTCTTGACAGGGAAGAAGCCGTCGCGCCGGCCCAAGAGGAGGCCCAGGAGTCTGCAGAAGCAGCTGGATAATATAACTCCAGGGATGTATCTGGATATGCTGTCAGCGGAAGCCTACCAGGTTGATTCAAGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1639

Protein Analysis

245

Amino Acids

27.27

Weight (kDa)

9.35

Isoelectric Point (pI)

57.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1639 PF07797 191 - 240 3.4e-20 Protein of unknown function (DUF1639)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 43
AccB7I CCANNNNNTGG 1 cut(s) 33
AccII CGCG 1 cut(s) 628
AciI CCGC 3 cut(s) 221, 362, 710
AclWI GGATC 3 cut(s) 315, 323, 603
AcsI RAATTY 1 cut(s) 238
AfiI CCNNNNNNNGG 6 cut(s) 33, 142, 177, 496, 497, 642
AgeI ACCGGT 3 cut(s) 418, 458, 466
AgsI TTSAA 3 cut(s) 73, 244, 732
AjiI CACGTC 1 cut(s) 95
AjnI CCWGG 4 cut(s) 410, 647, 682, 720
AloI GAACNNNNNNTCC 2 cut(s) 111, 143
AluBI AGCT 6 cut(s) 149, 154, 265, 359, 496, 667
AluI AGCT 6 cut(s) 149, 154, 265, 359, 496, 667
Alw21I GWGCWC 1 cut(s) 466
Alw44I GTGCAC 1 cut(s) 462
AlwI GGATC 3 cut(s) 315, 323, 603
AoxI GGCC 4 cut(s) 3, 407, 632, 644
ApaLI GTGCAC 1 cut(s) 462
ApeKI GCWGC 6 cut(s) 146, 341, 350, 359, 475, 664
ApoI RAATTY 1 cut(s) 238
AsiGI ACCGGT 3 cut(s) 418, 458, 466
AspLEI GCGC 1 cut(s) 630
AspS9I GGNCC 5 cut(s) 78, 408, 504, 633, 645
AsuC2I CCSGG 1 cut(s) 491
AsuHPI GGTGA 2 cut(s) 15, 433
AvaII GGWCC 2 cut(s) 78, 504
AxyI CCTNAGG 2 cut(s) 285, 540
BaeGI GKGCMC 1 cut(s) 466
BbsI GAAGAC 1 cut(s) 461
Bbv12I GWGCWC 1 cut(s) 466
BbvI GCAGC 6 cut(s) 158, 328, 337, 346, 487, 676
BccI CCATC 1 cut(s) 547
BceAI ACGGC 1 cut(s) 607
BciT130I CCWGG 4 cut(s) 412, 649, 684, 722
BcnI CCSGG 1 cut(s) 491
BfaI CTAG 2 cut(s) 444, 516
BfmI CTRYAG 1 cut(s) 656
BglI GCCNNNNNGGC 1 cut(s) 111
BisI GCNGC 7 cut(s) 147, 221, 342, 351, 360, 476, 665
BlpI GCTNAGC 1 cut(s) 150
BlsI GCNGC 7 cut(s) 148, 222, 343, 352, 361, 477, 666
Bme1390I CCNGG 5 cut(s) 412, 491, 649, 684, 722
Bme18I GGWCC 2 cut(s) 78, 504
BmgBI CACGTC 1 cut(s) 95
BmgT120I GGNCC 5 cut(s) 78, 408, 504, 633, 645
BmiI GGNNCC 1 cut(s) 546
BmrFI CCNGG 5 cut(s) 412, 491, 649, 684, 722
BmrI ACTGGG 2 cut(s) 37, 186
BmuI ACTGGG 2 cut(s) 37, 186
BpiI GAAGAC 1 cut(s) 461
BpmI CTGGAG 1 cut(s) 666
Bpu1102I GCTNAGC 1 cut(s) 150
BpuEI CTTGAG 1 cut(s) 245
BpuMI CCSGG 1 cut(s) 491
BsaJI CCNNGG 4 cut(s) 410, 548, 647, 683
BsaWI WCCGGW 3 cut(s) 418, 458, 466
BsaXI ACNNNNNCTCC 4 cut(s) 111, 141, 152, 182
Bsc4I CCNNNNNNNGG 6 cut(s) 33, 142, 177, 496, 497, 642
Bse118I RCCGGY 4 cut(s) 418, 458, 466, 630
Bse1I ACTGG 4 cut(s) 43, 106, 181, 516
Bse21I CCTNAGG 2 cut(s) 285, 540
Bse3DI GCAATG 1 cut(s) 121
BseBI CCWGG 4 cut(s) 412, 649, 684, 722
BseDI CCNNGG 4 cut(s) 410, 548, 647, 683
BseGI GGATG 3 cut(s) 252, 558, 693
BseLI CCNNNNNNNGG 6 cut(s) 33, 142, 177, 496, 497, 642
BseMI GCAATG 1 cut(s) 121
BseMII CTCAG 3 cut(s) 141, 299, 395
BseNI ACTGG 4 cut(s) 43, 106, 181, 516
BseRI GAGGAG 5 cut(s) 273, 392, 596, 605, 655
BseSI GKGCMC 1 cut(s) 466
BseXI GCAGC 6 cut(s) 158, 328, 337, 346, 487, 676
BseYI CCCAGC 1 cut(s) 496
Bsh1236I CGCG 1 cut(s) 628
BshFI GGCC 4 cut(s) 5, 409, 634, 646
BshTI ACCGGT 3 cut(s) 418, 458, 466
BsiHKAI GWGCWC 1 cut(s) 466
BsiSI CCGG 6 cut(s) 256, 419, 459, 467, 491, 631
BslFI GGGAC 1 cut(s) 31
BslI CCNNNNNNNGG 6 cut(s) 33, 142, 177, 496, 497, 642
BsmFI GGGAC 1 cut(s) 31
BsnI GGCC 4 cut(s) 5, 409, 634, 646
Bsp1286I GDGCHC 1 cut(s) 466
Bsp143I GATC 3 cut(s) 307, 328, 595
Bsp1720I GCTNAGC 1 cut(s) 150
BspACI CCGC 3 cut(s) 221, 362, 710
BspANI GGCC 4 cut(s) 5, 409, 634, 646
BspCNI CTCAG 3 cut(s) 142, 298, 396
BspFNI CGCG 1 cut(s) 628
BspLI GGNNCC 1 cut(s) 546
BspMAI CTGCAG 1 cut(s) 660
BspPI GGATC 3 cut(s) 315, 323, 603
BsrDI GCAATG 1 cut(s) 121
BsrFI RCCGGY 4 cut(s) 418, 458, 466, 630
BsrI ACTGG 4 cut(s) 43, 106, 181, 516
BssAI RCCGGY 4 cut(s) 418, 458, 466, 630
BssECI CCNNGG 4 cut(s) 410, 548, 647, 683
BssMI GATC 3 cut(s) 307, 328, 595
Bst2UI CCWGG 4 cut(s) 412, 649, 684, 722
BstC8I GCNNGC 1 cut(s) 632
BstDEI CTNAG 4 cut(s) 150, 285, 404, 540
BstF5I GGATG 3 cut(s) 252, 558, 693
BstFNI CGCG 1 cut(s) 628
BstHHI GCGC 1 cut(s) 630
BstKTI GATC 3 cut(s) 310, 331, 598
BstMBI GATC 3 cut(s) 307, 328, 595
BstMWI GCNNNNNNNGC 7 cut(s) 111, 341, 347, 350, 356, 359, 664
BstNI CCWGG 4 cut(s) 412, 649, 684, 722
BstSCI CCNGG 5 cut(s) 410, 489, 647, 682, 720
BstSFI CTRYAG 1 cut(s) 656
BstSLI GKGCMC 1 cut(s) 466
BstUI CGCG 1 cut(s) 628
BstV1I GCAGC 6 cut(s) 158, 328, 337, 346, 487, 676
BstV2I GAAGAC 1 cut(s) 461
BstX2I RGATCY 1 cut(s) 595
BstYI RGATCY 1 cut(s) 595
Bsu36I CCTNAGG 2 cut(s) 285, 540
BsuRI GGCC 4 cut(s) 5, 409, 634, 646
BtrI CACGTC 1 cut(s) 95
BtsCI GGATG 3 cut(s) 252, 558, 693
BtsIMutI CAGTG 1 cut(s) 174
Cac8I GCNNGC 1 cut(s) 632
CfoI GCGC 1 cut(s) 630
Cfr10I RCCGGY 4 cut(s) 418, 458, 466, 630
Cfr13I GGNCC 5 cut(s) 78, 408, 504, 633, 645
CsiI ACCWGGT 1 cut(s) 720
CspAI ACCGGT 3 cut(s) 418, 458, 466
CviAII CATG 3 cut(s) 137, 396, 451
DdeI CTNAG 4 cut(s) 150, 285, 404, 540
DpnI GATC 3 cut(s) 309, 330, 597
DpnII GATC 3 cut(s) 307, 328, 595
DrdI GACNNNNNNGTC 1 cut(s) 43
DseDI GACNNNNNNGTC 1 cut(s) 43
Eco32I GATATC 1 cut(s) 561
Eco47I GGWCC 2 cut(s) 78, 504
Eco81I CCTNAGG 2 cut(s) 285, 540
EcoRII CCWGG 4 cut(s) 410, 647, 682, 720
EcoRV GATATC 1 cut(s) 561
FaeI CATG 3 cut(s) 140, 399, 454
FaiI YATR 7 cut(s) 62, 138, 397, 452, 480, 677, 701
FaqI GGGAC 1 cut(s) 31
FatI CATG 3 cut(s) 136, 395, 450
FauI CCCGC 1 cut(s) 355
Fnu4HI GCNGC 7 cut(s) 147, 221, 342, 351, 360, 476, 665
FokI GGATG 3 cut(s) 239, 565, 700
Fsp4HI GCNGC 7 cut(s) 147, 221, 342, 351, 360, 476, 665
FspBI CTAG 2 cut(s) 444, 516
GlaI GCGC 1 cut(s) 629
GluI GCNGC 7 cut(s) 147, 221, 342, 351, 360, 476, 665
GsaI CCCAGC 1 cut(s) 500
GsuI CTGGAG 1 cut(s) 666
HaeIII GGCC 4 cut(s) 5, 409, 634, 646
HapII CCGG 6 cut(s) 256, 419, 459, 467, 491, 631
HhaI GCGC 1 cut(s) 630
Hin1II CATG 3 cut(s) 140, 399, 454
Hin6I GCGC 1 cut(s) 628
HinP1I GCGC 1 cut(s) 628
HincII GTYRAC 1 cut(s) 573
HindII GTYRAC 1 cut(s) 573
HinfI GANTC 5 cut(s) 140, 278, 400, 652, 728
HpaII CCGG 6 cut(s) 256, 419, 459, 467, 491, 631
HphI GGTGA 2 cut(s) 15, 433
Hpy166II GTNNAC 4 cut(s) 36, 250, 464, 573
Hpy188I TCNGA 4 cut(s) 172, 214, 325, 405
Hpy188III TCNNGA 3 cut(s) 507, 607, 695
Hpy8I GTNNAC 4 cut(s) 36, 250, 464, 573
Hpy99I CGWCG 1 cut(s) 628
HpyAV CCTTC 3 cut(s) 238, 362, 376
HpyCH4IV ACGT 2 cut(s) 94, 569
HpyCH4V TGCA 3 cut(s) 292, 464, 658
HpyF10VI GCNNNNNNNGC 7 cut(s) 111, 341, 347, 350, 356, 359, 664
HpyF3I CTNAG 4 cut(s) 150, 285, 404, 540
HpySE526I ACGT 2 cut(s) 94, 569
Hsp92II CATG 3 cut(s) 140, 399, 454
HspAI GCGC 1 cut(s) 628
KroI GCCGGC 1 cut(s) 630
KroNI GCCGGC 1 cut(s) 632
Kzo9I GATC 3 cut(s) 307, 328, 595
LmnI GCTCC 2 cut(s) 493, 544
Lsp1109I GCAGC 6 cut(s) 158, 328, 337, 346, 487, 676
MabI ACCWGGT 1 cut(s) 720
MaeI CTAG 2 cut(s) 444, 516
MaeII ACGT 2 cut(s) 94, 569
MaeIII GTNAC 2 cut(s) 21, 95
MalI GATC 3 cut(s) 309, 330, 597
MboI GATC 3 cut(s) 307, 328, 595
MboII GAAGA 3 cut(s) 436, 466, 628
MflI RGATCY 1 cut(s) 595
MhlI GDGCHC 1 cut(s) 466
MluCI AATT 1 cut(s) 238
MlyI GAGTC 3 cut(s) 134, 272, 661
MmeI TCCRAC 1 cut(s) 195
MroNI GCCGGC 1 cut(s) 630
MspA1I CMGCKG 3 cut(s) 149, 667, 710
MspI CCGG 6 cut(s) 256, 419, 459, 467, 491, 631
MspR9I CCNGG 5 cut(s) 412, 491, 649, 684, 722
MvaI CCWGG 4 cut(s) 412, 649, 684, 722
MvnI CGCG 1 cut(s) 628
MwoI GCNNNNNNNGC 7 cut(s) 111, 341, 347, 350, 356, 359, 664
NaeI GCCGGC 1 cut(s) 632
NciI CCSGG 1 cut(s) 491
NdeII GATC 3 cut(s) 307, 328, 595
NgoMIV GCCGGC 1 cut(s) 630
NlaIII CATG 3 cut(s) 140, 399, 454
NlaIV GGNNCC 1 cut(s) 546
NmeAIII GCCGAG 2 cut(s) 122, 573
NmuCI GTSAC 2 cut(s) 21, 95
PdiI GCCGGC 1 cut(s) 632
PfeI GAWTC 2 cut(s) 400, 728
PflMI CCANNNNNTGG 1 cut(s) 33
PfoI TCCNGGA 1 cut(s) 489
PinAI ACCGGT 3 cut(s) 418, 458, 466
PkrI GCNGC 7 cut(s) 148, 222, 343, 352, 361, 477, 666
PleI GAGTC 3 cut(s) 134, 272, 660
PpsI GAGTC 3 cut(s) 134, 272, 660
Psp6I CCWGG 4 cut(s) 410, 647, 682, 720
PspFI CCCAGC 1 cut(s) 496
PspGI CCWGG 4 cut(s) 410, 647, 682, 720
PspN4I GGNNCC 1 cut(s) 546
PspPI GGNCC 5 cut(s) 78, 408, 504, 633, 645
PstI CTGCAG 1 cut(s) 660
PsuI RGATCY 1 cut(s) 595
PvuII CAGCTG 2 cut(s) 149, 667
SatI GCNGC 7 cut(s) 147, 221, 342, 351, 360, 476, 665
Sau3AI GATC 3 cut(s) 307, 328, 595
Sau96I GGNCC 5 cut(s) 78, 408, 504, 633, 645
SchI GAGTC 3 cut(s) 134, 272, 661
ScrFI CCNGG 5 cut(s) 412, 491, 649, 684, 722
SduI GDGCHC 1 cut(s) 466
SexAI ACCWGGT 1 cut(s) 720
SfcI CTRYAG 1 cut(s) 656
SgrAI CRCCGGYG 1 cut(s) 466
SinI GGWCC 2 cut(s) 78, 504
SmlI CTYRAG 1 cut(s) 260
SmoI CTYRAG 1 cut(s) 260
Sse9I AATT 1 cut(s) 238
SsiI CCGC 3 cut(s) 221, 362, 710
SspMI CTAG 2 cut(s) 444, 516
StyD4I CCNGG 5 cut(s) 410, 489, 647, 682, 720
TaiI ACGT 2 cut(s) 97, 572
TaqII GACCGA 1 cut(s) 492
TasI AATT 1 cut(s) 238
TauI GCSGC 1 cut(s) 223
TfiI GAWTC 2 cut(s) 400, 728
TscAI CASTG 1 cut(s) 181
TseFI GTSAC 2 cut(s) 21, 95
TseI GCWGC 6 cut(s) 146, 341, 350, 359, 475, 664
Tsp45I GTSAC 2 cut(s) 21, 95
TspDTI ATGAA 2 cut(s) 132, 467
TspRI CASTG 1 cut(s) 181
Van91I CCANNNNNTGG 1 cut(s) 33
VneI GTGCAC 1 cut(s) 462
VpaK11BI GGWCC 2 cut(s) 78, 504
XapI RAATTY 1 cut(s) 238
XspI CTAG 2 cut(s) 444, 516
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.