Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0017707

Physical Location & Seq

Genomic Coordinates Forward (+)

9618209 .. 9619507

Gene Structure 1299 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g10190.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 864 bp

ATGCAGAGGAACAAGTGCATAATCCTAGTTACATTACCCTCAATCATTATCTTTCTCTTGCTATTCATCATATTCTTCAATGTTCAAGTTTTAAAGCCTCCACCACCAAATGCTTCCTTCAAATTACCCACCATAAACCCTAATCAAACCCAATTCAGCCTCATGATAGGGATCCTAACCCGCGCCGACAACTACGACCACCGCCACTTCCTCCGCCTCGTCTACGGCGTCCAGTCTTCTCCCCTTGCCACTATCCACGTCAAGTTCGTCTTCTGCAGCCTCACAAAACCCGAGCAGCGCGCCCTAATTGCCCTTGAAATGCTTCGCTTCGATGATATCCTCATTCTCAACTGCACTGAGAACATGAACAACGGCAAAACCTACACTTACTTCTCCTCCCTCCCCCGCCTCCTCCCGCGCAAATACGACTACATCATGAAGGCAGACGACGACGTTTTCATTCGCTTCGAGCCACTAGCATTGTCGCTCAAGGCACTGCCTAGGGTGGATTTGTACTACGGATTTGTTATCCCTTGTGCTAGCATGGATCCCTTTGTGGAGTATATGTCCGGGATGGGGTTTTTGTTGTCGTGGGATTTGGTGAAGTGGATTGGAAGCTCTGAAATTCCTAAAGAAACTGTGGTTGGTCCCGAGGATAAGTTGGTGGGAAAATGGTTTAAGATGGGGAACAAGGCGAAGAATAGGTTTAGTAATAAGCCGGCGATGTATGATTATCCGGGAACAAATGGGAGGTGCTCGCATGAGCTTATACCGGAGACGGTGGCTGTTCATAGGCTCAAGAGGTGGGATCAATGGTTGCGTGTGCTTGAATATTTCAATGTAACCAAGGGCTTAAAGTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006029 GO:0006464 GO:0006486 GO:0006493 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008378 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009653 GO:0009791 GO:0009888 GO:0009987 GO:0010015 GO:0010053 GO:0010054 GO:0010154 GO:0010191 GO:0010192 GO:0010214 GO:0010384 GO:0010404 GO:0010405 GO:0012505 GO:0016740 GO:0016757 GO:0016758 GO:0018193 GO:0018208 GO:0018258 GO:0019538 GO:0021700 GO:0022414 GO:0022622 GO:0030154 GO:0032501 GO:0032502 GO:0034645 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043413 GO:0044036 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048316 GO:0048354 GO:0048359 GO:0048364 GO:0048468 GO:0048469 GO:0048608 GO:0048731 GO:0048764 GO:0048765 GO:0048856 GO:0048869 GO:0061458 GO:0070085 GO:0071554 GO:0071695 GO:0071704 GO:0080147 GO:0090558 GO:0090627 GO:0099402 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1905392 GO:1990714

KEGG Pathways

Metabolic & Signaling

ko00532 ko00534 ko01100 map00532 map00534 map01100

Pfam Domains

Protein Families

Galactosyl_T

Protein Analysis

288

Amino Acids

33.26

Weight (kDa)

9.32

Isoelectric Point (pI)

36.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017707)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g10190 FvH4_7g10191
prunus_persica	Prupe.2G131800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0347911
rosa_laevigata	RLG00000028704
rosa_multiflora	Rmu_ssc0000342.1_g000012
rosa_roxburghii	Rroxscaffold_4G00307380
rosa_rugosa	Rorug01G0190400
rosa_samantha	Rh1AG208800 Rh1BG173400 Rh1DG203400
rosa_wichuraiana	Rw1G017350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	222
AccII	CGCG	3 cut(s)	183, 300, 418
AciI	CCGC	5 cut(s)	181, 202, 214, 406, 416
AclWI	GGATC	5 cut(s)	166, 179, 542, 555, 816
AcsI	RAATTY	1 cut(s)	624
AcyI	GRCGYC	1 cut(s)	228
AfaI	GTAC	1 cut(s)	515
AfiI	CCNNNNNNNGG	1 cut(s)	576
AgsI	TTSAA	6 cut(s)	79, 86, 121, 317, 830, 838
AjiI	CACGTC	1 cut(s)	259
AjuI	GAANNNNNNNTTGG	2 cut(s)	627, 659
AluBI	AGCT	2 cut(s)	618, 766
AluI	AGCT	2 cut(s)	618, 766
Alw21I	GWGCWC	1 cut(s)	758
Alw26I	GTCTC	1 cut(s)	770
AlwI	GGATC	5 cut(s)	166, 179, 542, 555, 816
Ama87I	CYCGRG	2 cut(s)	290, 650
ApeKI	GCWGC	2 cut(s)	276, 295
ApoI	RAATTY	1 cut(s)	624
Asp700I	GAANNNNTTC	1 cut(s)	321
AspA2I	CCTAGG	1 cut(s)	500
AspLEI	GCGC	4 cut(s)	185, 300, 302, 420
AspS9I	GGNCC	1 cut(s)	647
AsuC2I	CCSGG	2 cut(s)	571, 738
AsuHPI	GGTGA	1 cut(s)	613
AsuNHI	GCTAGC	1 cut(s)	539
AvaI	CYCGRG	2 cut(s)	290, 650
AvaII	GGWCC	1 cut(s)	647
AvrII	CCTAGG	1 cut(s)	500
BamHI	GGATCC	2 cut(s)	171, 547
BbsI	GAAGAC	2 cut(s)	228, 262
Bbv12I	GWGCWC	1 cut(s)	758
BbvI	GCAGC	2 cut(s)	288, 307
BccI	CCATC	2 cut(s)	568, 676
BceAI	ACGGC	2 cut(s)	241, 388
BcnI	CCSGG	2 cut(s)	571, 738
BcoDI	GTCTC	1 cut(s)	770
BfaI	CTAG	5 cut(s)	26, 476, 501, 540, 862
BfmI	CTRYAG	1 cut(s)	274
BisI	GCNGC	2 cut(s)	277, 296
BlnI	CCTAGG	1 cut(s)	500
BlsI	GCNGC	2 cut(s)	278, 297
Bme1390I	CCNGG	2 cut(s)	571, 738
Bme18I	GGWCC	1 cut(s)	647
BmeT110I	CYCGRG	2 cut(s)	290, 650
BmgBI	CACGTC	1 cut(s)	259
BmgT120I	GGNCC	1 cut(s)	647
BmiI	GGNNCC	3 cut(s)	173, 549, 649
BmrFI	CCNGG	2 cut(s)	571, 738
BmtI	GCTAGC	1 cut(s)	543
BpiI	GAAGAC	2 cut(s)	228, 262
BpuEI	CTTGAG	2 cut(s)	473, 782
BpuMI	CCSGG	2 cut(s)	571, 738
BsaBI	GATNNNNATC	1 cut(s)	170
BsaHI	GRCGYC	1 cut(s)	228
BsaJI	CCNNGG	3 cut(s)	500, 651, 846
BsaWI	WCCGGW	1 cut(s)	772
BsaXI	ACNNNNNCTCC	4 cut(s)	380, 410, 551, 581
Bsc4I	CCNNNNNNNGG	1 cut(s)	576
Bse118I	RCCGGY	1 cut(s)	718
Bse1I	ACTGG	1 cut(s)	232
Bse8I	GATNNNNATC	1 cut(s)	170
BseDI	CCNNGG	3 cut(s)	500, 651, 846
BseGI	GGATG	1 cut(s)	579
BseJI	GATNNNNATC	1 cut(s)	170
BseLI	CCNNNNNNNGG	1 cut(s)	576
BseMII	CTCAG	1 cut(s)	348
BseNI	ACTGG	1 cut(s)	232
BsePI	GCGCGC	1 cut(s)	298
BseRI	GAGGAG	2 cut(s)	385, 401
BseXI	GCAGC	2 cut(s)	288, 307
BsgI	GTGCAG	1 cut(s)	337
Bsh1236I	CGCG	3 cut(s)	183, 300, 418
BsiHKAI	GWGCWC	1 cut(s)	758
BsiHKCI	CYCGRG	2 cut(s)	290, 650
BsiSI	CCGG	4 cut(s)	570, 719, 737, 773
BslFI	GGGAC	1 cut(s)	633
BslI	CCNNNNNNNGG	1 cut(s)	576
BsmAI	GTCTC	1 cut(s)	770
BsmBI	CGTCTC	1 cut(s)	770
BsmFI	GGGAC	1 cut(s)	633
BsoBI	CYCGRG	2 cut(s)	290, 650
Bsp1286I	GDGCHC	1 cut(s)	758
Bsp143I	GATC	3 cut(s)	171, 547, 808
BspACI	CCGC	5 cut(s)	181, 202, 214, 406, 416
BspCNI	CTCAG	1 cut(s)	349
BspFNI	CGCG	3 cut(s)	183, 300, 418
BspHI	TCATGA	2 cut(s)	162, 435
BspLI	GGNNCC	3 cut(s)	173, 549, 649
BspMAI	CTGCAG	1 cut(s)	278
BspOI	GCTAGC	1 cut(s)	543
BspPI	GGATC	5 cut(s)	166, 179, 542, 555, 816
BsrFI	RCCGGY	1 cut(s)	718
BsrI	ACTGG	1 cut(s)	232
BssAI	RCCGGY	1 cut(s)	718
BssECI	CCNNGG	3 cut(s)	500, 651, 846
BssHII	GCGCGC	1 cut(s)	298
BssMI	GATC	3 cut(s)	171, 547, 808
BssNI	GRCGYC	1 cut(s)	228
BssT1I	CCWWGG	2 cut(s)	500, 846
Bst4CI	ACNGT	2 cut(s)	640, 781
BstACI	GRCGYC	1 cut(s)	228
BstC8I	GCNNGC	4 cut(s)	300, 541, 720, 758
BstDEI	CTNAG	1 cut(s)	357
BstF5I	GGATG	1 cut(s)	579
BstFNI	CGCG	3 cut(s)	183, 300, 418
BstHHI	GCGC	4 cut(s)	185, 300, 302, 420
BstKTI	GATC	3 cut(s)	174, 550, 811
BstMAI	GTCTC	1 cut(s)	770
BstMBI	GATC	3 cut(s)	171, 547, 808
BstMWI	GCNNNNNNNGC	1 cut(s)	308
BstSCI	CCNGG	2 cut(s)	569, 736
BstSFI	CTRYAG	1 cut(s)	274
BstUI	CGCG	3 cut(s)	183, 300, 418
BstV1I	GCAGC	2 cut(s)	288, 307
BstV2I	GAAGAC	2 cut(s)	228, 262
BstX2I	RGATCY	2 cut(s)	171, 547
BstYI	RGATCY	2 cut(s)	171, 547
BtgZI	GCGATG	1 cut(s)	737
BtrI	CACGTC	1 cut(s)	259
BtsCI	GGATG	1 cut(s)	579
BtsI	GCAGTG	1 cut(s)	494
BtsIMutI	CAGTG	2 cut(s)	354, 494
Cac8I	GCNNGC	4 cut(s)	300, 541, 720, 758
CciI	TCATGA	2 cut(s)	162, 435
CfoI	GCGC	4 cut(s)	185, 300, 302, 420
Cfr10I	RCCGGY	1 cut(s)	718
Cfr13I	GGNCC	1 cut(s)	647
CseI	GACGC	1 cut(s)	217
Csp6I	GTAC	1 cut(s)	514
CspCI	CAANNNNNGTGG	2 cut(s)	462, 497
CviAII	CATG	5 cut(s)	163, 364, 436, 544, 761
CviQI	GTAC	1 cut(s)	514
DdeI	CTNAG	1 cut(s)	357
DpnI	GATC	3 cut(s)	173, 549, 810
DpnII	GATC	3 cut(s)	171, 547, 808
DraI	TTTAAA	1 cut(s)	93
EciI	GGCGGA	1 cut(s)	203
Eco130I	CCWWGG	2 cut(s)	500, 846
Eco32I	GATATC	1 cut(s)	337
Eco47I	GGWCC	1 cut(s)	647
Eco88I	CYCGRG	2 cut(s)	290, 650
EcoRV	GATATC	1 cut(s)	337
EcoT14I	CCWWGG	2 cut(s)	500, 846
ErhI	CCWWGG	2 cut(s)	500, 846
Esp3I	CGTCTC	1 cut(s)	770
FaeI	CATG	5 cut(s)	166, 367, 439, 547, 764
FalI	AAGNNNNNCTT	2 cut(s)	254, 286
FaqI	GGGAC	1 cut(s)	633
FatI	CATG	5 cut(s)	162, 363, 435, 543, 760
FauI	CCCGC	3 cut(s)	188, 413, 423
FblI	GTMKAC	1 cut(s)	222
Fnu4HI	GCNGC	2 cut(s)	277, 296
FokI	GGATG	1 cut(s)	586
Fsp4HI	GCNGC	2 cut(s)	277, 296
FspBI	CTAG	5 cut(s)	26, 476, 501, 540, 862
GlaI	GCGC	4 cut(s)	184, 299, 301, 419
GluI	GCNGC	2 cut(s)	277, 296
HapII	CCGG	4 cut(s)	570, 719, 737, 773
HgaI	GACGC	1 cut(s)	217
HhaI	GCGC	4 cut(s)	185, 300, 302, 420
Hin1I	GRCGYC	1 cut(s)	228
Hin1II	CATG	5 cut(s)	166, 367, 439, 547, 764
Hin6I	GCGC	4 cut(s)	183, 298, 300, 418
HinP1I	GCGC	4 cut(s)	183, 298, 300, 418
HpaII	CCGG	4 cut(s)	570, 719, 737, 773
HphI	GGTGA	1 cut(s)	613
Hpy166II	GTNNAC	1 cut(s)	223
Hpy188I	TCNGA	1 cut(s)	622
Hpy188III	TCNNGA	4 cut(s)	163, 436, 650, 799
Hpy8I	GTNNAC	1 cut(s)	223
Hpy99I	CGWCG	2 cut(s)	452, 455
HpyAV	CCTTC	2 cut(s)	127, 433
HpyCH4III	ACNGT	2 cut(s)	640, 781
HpyCH4IV	ACGT	2 cut(s)	258, 453
HpyCH4V	TGCA	4 cut(s)	4, 18, 276, 354
HpyF10VI	GCNNNNNNNGC	1 cut(s)	308
HpyF3I	CTNAG	1 cut(s)	357
HpySE526I	ACGT	2 cut(s)	258, 453
Hsp92I	GRCGYC	1 cut(s)	228
Hsp92II	CATG	5 cut(s)	166, 367, 439, 547, 764
HspAI	GCGC	4 cut(s)	183, 298, 300, 418
KroI	GCCGGC	1 cut(s)	718
KroNI	GCCGGC	1 cut(s)	720
Kzo9I	GATC	3 cut(s)	171, 547, 808
LpnPI	CCDG	5 cut(s)	245, 583, 732, 750, 786
Lsp1109I	GCAGC	2 cut(s)	288, 307
MaeI	CTAG	5 cut(s)	26, 476, 501, 540, 862
MaeII	ACGT	2 cut(s)	258, 453
MaeIII	GTNAC	2 cut(s)	28, 841
MalI	GATC	3 cut(s)	173, 549, 810
MboI	GATC	3 cut(s)	171, 547, 808
MboII	GAAGA	4 cut(s)	67, 228, 262, 709
MflI	RGATCY	2 cut(s)	171, 547
MhlI	GDGCHC	1 cut(s)	758
MluCI	AATT	4 cut(s)	122, 152, 306, 624
MroNI	GCCGGC	1 cut(s)	718
MroXI	GAANNNNTTC	1 cut(s)	321
MseI	TTAA	3 cut(s)	92, 678, 854
MspI	CCGG	4 cut(s)	570, 719, 737, 773
MspR9I	CCNGG	2 cut(s)	571, 738
MvnI	CGCG	3 cut(s)	183, 300, 418
MwoI	GCNNNNNNNGC	1 cut(s)	308
NaeI	GCCGGC	1 cut(s)	720
NciI	CCSGG	2 cut(s)	571, 738
NdeII	GATC	3 cut(s)	171, 547, 808
NgoMIV	GCCGGC	1 cut(s)	718
NheI	GCTAGC	1 cut(s)	539
NlaIII	CATG	5 cut(s)	166, 367, 439, 547, 764
NlaIV	GGNNCC	3 cut(s)	173, 549, 649
PagI	TCATGA	2 cut(s)	162, 435
PauI	GCGCGC	1 cut(s)	298
PcsI	WCGNNNNNNNCGW	2 cut(s)	225, 264
PdiI	GCCGGC	1 cut(s)	720
PdmI	GAANNNNTTC	1 cut(s)	321
PfoI	TCCNGGA	2 cut(s)	569, 736
PkrI	GCNGC	2 cut(s)	278, 297
PspN4I	GGNNCC	3 cut(s)	173, 549, 649
PspPI	GGNCC	1 cut(s)	647
PstI	CTGCAG	1 cut(s)	278
PsuI	RGATCY	2 cut(s)	171, 547
PteI	GCGCGC	1 cut(s)	298
RsaI	GTAC	1 cut(s)	515
RsaNI	GTAC	1 cut(s)	514
SaqAI	TTAA	3 cut(s)	92, 678, 854
SatI	GCNGC	2 cut(s)	277, 296
Sau3AI	GATC	3 cut(s)	171, 547, 808
Sau96I	GGNCC	1 cut(s)	647
ScrFI	CCNGG	2 cut(s)	571, 738
SduI	GDGCHC	1 cut(s)	758
SetI	ASST	8 cut(s)	261, 383, 456, 620, 707, 755, 768, 806
SfcI	CTRYAG	1 cut(s)	274
SinI	GGWCC	1 cut(s)	647
SmlI	CTYRAG	2 cut(s)	488, 797
SmoI	CTYRAG	2 cut(s)	488, 797
Sse9I	AATT	4 cut(s)	122, 152, 306, 624
SsiI	CCGC	5 cut(s)	181, 202, 214, 406, 416
SspI	AATATT	1 cut(s)	833
SspMI	CTAG	5 cut(s)	26, 476, 501, 540, 862
StyD4I	CCNGG	2 cut(s)	569, 736
StyI	CCWWGG	2 cut(s)	500, 846
TaaI	ACNGT	2 cut(s)	640, 781
TaiI	ACGT	2 cut(s)	261, 456
TaqI	TCGA	2 cut(s)	330, 468
TasI	AATT	4 cut(s)	122, 152, 306, 624
TatI	WGTACW	1 cut(s)	513
Tru1I	TTAA	3 cut(s)	92, 678, 854
Tru9I	TTAA	3 cut(s)	92, 678, 854
TscAI	CASTG	2 cut(s)	361, 501
TseI	GCWGC	2 cut(s)	276, 295
TspDTI	ATGAA	5 cut(s)	55, 380, 448, 452, 779
TspGWI	ACGGA	1 cut(s)	534
TspRI	CASTG	2 cut(s)	361, 501
VpaK11BI	GGWCC	1 cut(s)	647
XapI	RAATTY	1 cut(s)	624
XmaJI	CCTAGG	1 cut(s)	500
XmiI	GTMKAC	1 cut(s)	222
XmnI	GAANNNNTTC	1 cut(s)	321
XspI	CTAG	5 cut(s)	26, 476, 501, 540, 862

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.