Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0017707

Physical Location & Seq

Genomic Coordinates Forward (+)

9627281 .. 9627958

Gene Structure 678 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g10191.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 678 bp

ATGATCGGGATCCTAACCCGCACCGACAACTACGACCGCTGCCACTTCCTCCCCCTTGTCTACGGGGTACGTCCAGTCCTCTCTCCGCGCCACCATCCACGTCAACTCAAGTTCGTCTTCTGCAGCCTCACAAAACCCAAGCAGCGTGCCCTAATCGCCCTTGAAATGCTTCGTTTTGATGATATCCTCATTCTCAACTGCACTGAGACCATGAACAGCGGCAAAACCTACACCTACTTCTCACTCCCCAAACTACTCCTCCCGCGTAAATACGACTACATCATGATGGCAGACGACGACGTTTTCATTCGCTTCGAGCCACTTGCCTTGTCGCTCAAGGCACTGCCTAGGGTGGATTTGTACTACGGATTTGTTATCCCTTGTGCTAGCATGGATCCCTTTGTGGAGTACATGTCGGGTATGGGGTTTTTGTTGTCGTGGGATTTGGTGGAGTGGATTAGAAGCTCTGAAGTCCCTAAGGAGAATGTGGTTGGTCCCCAGGACAAATTGATCGAAAAATGGTTTAAGATGGGGAACAAGGCCATGAAAAAGATTAGTAATAAGCCGGCGATGTATGATTATCCGGGAACAAATGAGAGGTGCTCGCATGAACTTATACCGGAGACGGTGGCTGTTCATAGGCTCAAGAGGCTTAAAGATGTAGTTTCTCAAAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000271 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005975 GO:0005976 GO:0006029 GO:0006464 GO:0006486 GO:0006493 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008194 GO:0008378 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009653 GO:0009791 GO:0009888 GO:0009987 GO:0010015 GO:0010053 GO:0010054 GO:0010154 GO:0010191 GO:0010192 GO:0010214 GO:0010384 GO:0010404 GO:0010405 GO:0012505 GO:0016051 GO:0016740 GO:0016757 GO:0016758 GO:0018193 GO:0018208 GO:0018258 GO:0019538 GO:0021700 GO:0022414 GO:0022622 GO:0030154 GO:0032501 GO:0032502 GO:0033692 GO:0034637 GO:0034645 GO:0035250 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043413 GO:0044036 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0047220 GO:0048316 GO:0048354 GO:0048359 GO:0048364 GO:0048468 GO:0048469 GO:0048608 GO:0048731 GO:0048764 GO:0048765 GO:0048856 GO:0048869 GO:0051072 GO:0061458 GO:0070085 GO:0071554 GO:0071695 GO:0071704 GO:0080147 GO:0090558 GO:0090627 GO:0099402 GO:0140096 GO:0140103 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1905392 GO:1990714

KEGG Pathways

Metabolic & Signaling

ko00532 ko00534 ko01100 map00532 map00534 map01100

Pfam Domains

Protein Families

Galactosyl_T

Protein Analysis

226

Amino Acids

26.21

Weight (kDa)

8.99

Isoelectric Point (pI)

41.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017707)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g10190 FvH4_7g10191
prunus_persica	Prupe.2G131800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0347911
rosa_laevigata	RLG00000028704
rosa_multiflora	Rmu_ssc0000342.1_g000012
rosa_roxburghii	Rroxscaffold_4G00307380
rosa_rugosa	Rorug01G0190400
rosa_samantha	Rh1AG208800 Rh1BG173400 Rh1DG203400
rosa_wichuraiana	Rw1G017350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	60
AccII	CGCG	2 cut(s)	88, 265
AciI	CCGC	5 cut(s)	19, 37, 86, 219, 263
AclWI	GGATC	4 cut(s)	4, 17, 389, 402
AcuI	CTGAAG	1 cut(s)	489
AfaI	GTAC	3 cut(s)	69, 362, 410
AflIII	ACRYGT	1 cut(s)	411
AgsI	TTSAA	1 cut(s)	164
AjiI	CACGTC	1 cut(s)	101
AjnI	CCWGG	1 cut(s)	498
AluBI	AGCT	1 cut(s)	465
AluI	AGCT	1 cut(s)	465
Alw21I	GWGCWC	1 cut(s)	605
Alw26I	GTCTC	2 cut(s)	200, 617
AlwI	GGATC	4 cut(s)	4, 17, 389, 402
AoxI	GGCC	1 cut(s)	540
ApeKI	GCWGC	3 cut(s)	39, 123, 142
Asp700I	GAANNNNTTC	1 cut(s)	168
AspA2I	CCTAGG	1 cut(s)	347
AspLEI	GCGC	1 cut(s)	90
AspS9I	GGNCC	1 cut(s)	494
AsuC2I	CCSGG	1 cut(s)	585
AsuNHI	GCTAGC	1 cut(s)	386
AvaII	GGWCC	1 cut(s)	494
AvrII	CCTAGG	1 cut(s)	347
AxyI	CCTNAGG	1 cut(s)	477
BaeGI	GKGCMC	1 cut(s)	151
BamHI	GGATCC	2 cut(s)	9, 394
BbsI	GAAGAC	1 cut(s)	109
Bbv12I	GWGCWC	1 cut(s)	605
BbvI	GCAGC	3 cut(s)	26, 135, 154
BccI	CCATC	3 cut(s)	102, 280, 523
BcgI	CGANNNNNNTGC	2 cut(s)	305, 339
BciT130I	CCWGG	1 cut(s)	500
BcnI	CCSGG	1 cut(s)	585
BcoDI	GTCTC	2 cut(s)	200, 617
BfaI	CTAG	2 cut(s)	348, 387
BfmI	CTRYAG	1 cut(s)	121
BisI	GCNGC	4 cut(s)	40, 124, 143, 220
BlnI	CCTAGG	1 cut(s)	347
BlsI	GCNGC	4 cut(s)	41, 125, 144, 221
Bme1390I	CCNGG	2 cut(s)	500, 585
Bme18I	GGWCC	1 cut(s)	494
BmgBI	CACGTC	1 cut(s)	101
BmgT120I	GGNCC	1 cut(s)	494
BmiI	GGNNCC	3 cut(s)	11, 396, 496
BmrFI	CCNGG	2 cut(s)	500, 585
BmtI	GCTAGC	1 cut(s)	390
BpiI	GAAGAC	1 cut(s)	109
BplI	GAGNNNNNCTC	2 cut(s)	587, 619
BpuEI	CTTGAG	3 cut(s)	92, 320, 629
BpuMI	CCSGG	1 cut(s)	585
BsaBI	GATNNNNATC	1 cut(s)	8
BsaI	GGTCTC	1 cut(s)	200
BsaJI	CCNNGG	2 cut(s)	347, 498
BsaWI	WCCGGW	1 cut(s)	619
BsaXI	ACNNNNNCTCC	4 cut(s)	243, 273, 398, 428
Bse118I	RCCGGY	1 cut(s)	565
Bse1I	ACTGG	1 cut(s)	74
Bse21I	CCTNAGG	1 cut(s)	477
Bse8I	GATNNNNATC	1 cut(s)	8
BseBI	CCWGG	1 cut(s)	500
BseDI	CCNNGG	2 cut(s)	347, 498
BseGI	GGATG	1 cut(s)	94
BseJI	GATNNNNATC	1 cut(s)	8
BseMII	CTCAG	1 cut(s)	195
BseNI	ACTGG	1 cut(s)	74
BseRI	GAGGAG	1 cut(s)	248
BseSI	GKGCMC	1 cut(s)	151
BseXI	GCAGC	3 cut(s)	26, 135, 154
BsgI	GTGCAG	1 cut(s)	184
Bsh1236I	CGCG	2 cut(s)	88, 265
Bsh1285I	CGRYCG	1 cut(s)	37
BshFI	GGCC	1 cut(s)	542
BsiEI	CGRYCG	1 cut(s)	37
BsiHKAI	GWGCWC	1 cut(s)	605
BsiSI	CCGG	3 cut(s)	566, 584, 620
BslFI	GGGAC	2 cut(s)	458, 480
BsmAI	GTCTC	2 cut(s)	200, 617
BsmBI	CGTCTC	1 cut(s)	617
BsmFI	GGGAC	2 cut(s)	458, 480
BsnI	GGCC	1 cut(s)	542
Bso31I	GGTCTC	1 cut(s)	200
Bsp1286I	GDGCHC	2 cut(s)	151, 605
Bsp143I	GATC	4 cut(s)	3, 9, 394, 510
BspACI	CCGC	5 cut(s)	19, 37, 86, 219, 263
BspANI	GGCC	1 cut(s)	542
BspCNI	CTCAG	1 cut(s)	196
BspFNI	CGCG	2 cut(s)	88, 265
BspHI	TCATGA	1 cut(s)	282
BspLI	GGNNCC	3 cut(s)	11, 396, 496
BspMAI	CTGCAG	1 cut(s)	125
BspOI	GCTAGC	1 cut(s)	390
BspPI	GGATC	4 cut(s)	4, 17, 389, 402
BspTNI	GGTCTC	1 cut(s)	200
BsrFI	RCCGGY	1 cut(s)	565
BsrI	ACTGG	1 cut(s)	74
BssAI	RCCGGY	1 cut(s)	565
BssECI	CCNNGG	2 cut(s)	347, 498
BssMI	GATC	4 cut(s)	3, 9, 394, 510
BssT1I	CCWWGG	1 cut(s)	347
Bst2UI	CCWGG	1 cut(s)	500
Bst4CI	ACNGT	1 cut(s)	628
BstC8I	GCNNGC	4 cut(s)	147, 388, 567, 605
BstDEI	CTNAG	2 cut(s)	204, 477
BstF5I	GGATG	1 cut(s)	94
BstFNI	CGCG	2 cut(s)	88, 265
BstHHI	GCGC	1 cut(s)	90
BstKTI	GATC	4 cut(s)	6, 12, 397, 513
BstMAI	GTCTC	2 cut(s)	200, 617
BstMBI	GATC	4 cut(s)	3, 9, 394, 510
BstMCI	CGRYCG	1 cut(s)	37
BstMWI	GCNNNNNNNGC	2 cut(s)	155, 649
BstNI	CCWGG	1 cut(s)	500
BstNSI	RCATGY	1 cut(s)	415
BstSCI	CCNGG	2 cut(s)	498, 583
BstSFI	CTRYAG	1 cut(s)	121
BstSLI	GKGCMC	1 cut(s)	151
BstUI	CGCG	2 cut(s)	88, 265
BstV1I	GCAGC	3 cut(s)	26, 135, 154
BstV2I	GAAGAC	1 cut(s)	109
BstX2I	RGATCY	2 cut(s)	9, 394
BstYI	RGATCY	2 cut(s)	9, 394
Bsu36I	CCTNAGG	1 cut(s)	477
BsuRI	GGCC	1 cut(s)	542
BtgZI	GCGATG	1 cut(s)	584
BtrI	CACGTC	1 cut(s)	101
BtsCI	GGATG	1 cut(s)	94
BtsI	GCAGTG	1 cut(s)	341
BtsIMutI	CAGTG	2 cut(s)	201, 341
Cac8I	GCNNGC	4 cut(s)	147, 388, 567, 605
CciI	TCATGA	1 cut(s)	282
CfoI	GCGC	1 cut(s)	90
Cfr10I	RCCGGY	1 cut(s)	565
Cfr13I	GGNCC	1 cut(s)	494
Csp6I	GTAC	3 cut(s)	68, 361, 409
CspCI	CAANNNNNGTGG	2 cut(s)	309, 344
CviAII	CATG	6 cut(s)	211, 283, 391, 412, 544, 608
CviJI	RGCY	8 cut(s)	126, 319, 465, 542, 565, 632, 643, 652
CviKI_1	RGCY	8 cut(s)	126, 319, 465, 542, 565, 632, 643, 652
CviQI	GTAC	3 cut(s)	68, 361, 409
DdeI	CTNAG	2 cut(s)	204, 477
DpnI	GATC	4 cut(s)	5, 11, 396, 512
DpnII	GATC	4 cut(s)	3, 9, 394, 510
Eco130I	CCWWGG	1 cut(s)	347
Eco31I	GGTCTC	1 cut(s)	200
Eco32I	GATATC	1 cut(s)	184
Eco47I	GGWCC	1 cut(s)	494
Eco57I	CTGAAG	1 cut(s)	489
Eco81I	CCTNAGG	1 cut(s)	477
EcoRII	CCWGG	1 cut(s)	498
EcoRV	GATATC	1 cut(s)	184
EcoT14I	CCWWGG	1 cut(s)	347
ErhI	CCWWGG	1 cut(s)	347
Esp3I	CGTCTC	1 cut(s)	617
FaeI	CATG	6 cut(s)	214, 286, 394, 415, 547, 611
FalI	AAGNNNNNCTT	2 cut(s)	101, 133
FaqI	GGGAC	2 cut(s)	458, 480
FatI	CATG	6 cut(s)	210, 282, 390, 411, 543, 607
FauI	CCCGC	2 cut(s)	26, 270
FblI	GTMKAC	1 cut(s)	60
Fnu4HI	GCNGC	4 cut(s)	40, 124, 143, 220
FokI	GGATG	1 cut(s)	81
Fsp4HI	GCNGC	4 cut(s)	40, 124, 143, 220
FspBI	CTAG	2 cut(s)	348, 387
GlaI	GCGC	1 cut(s)	89
GluI	GCNGC	4 cut(s)	40, 124, 143, 220
HaeIII	GGCC	1 cut(s)	542
HapII	CCGG	3 cut(s)	566, 584, 620
HhaI	GCGC	1 cut(s)	90
Hin1II	CATG	6 cut(s)	214, 286, 394, 415, 547, 611
Hin6I	GCGC	1 cut(s)	88
HinP1I	GCGC	1 cut(s)	88
HincII	GTYRAC	1 cut(s)	104
HindII	GTYRAC	1 cut(s)	104
HpaII	CCGG	3 cut(s)	566, 584, 620
Hpy166II	GTNNAC	2 cut(s)	61, 104
Hpy188I	TCNGA	1 cut(s)	469
Hpy188III	TCNNGA	3 cut(s)	7, 283, 646
Hpy8I	GTNNAC	2 cut(s)	61, 104
Hpy99I	CGWCG	2 cut(s)	299, 302
HpyCH4III	ACNGT	1 cut(s)	628
HpyCH4IV	ACGT	3 cut(s)	70, 100, 300
HpyCH4V	TGCA	2 cut(s)	123, 201
HpyF10VI	GCNNNNNNNGC	2 cut(s)	155, 649
HpyF3I	CTNAG	2 cut(s)	204, 477
HpySE526I	ACGT	3 cut(s)	70, 100, 300
Hsp92II	CATG	6 cut(s)	214, 286, 394, 415, 547, 611
HspAI	GCGC	1 cut(s)	88
KroI	GCCGGC	1 cut(s)	565
KroNI	GCCGGC	1 cut(s)	567
Kzo9I	GATC	4 cut(s)	3, 9, 394, 510
LpnPI	CCDG	6 cut(s)	87, 485, 512, 579, 597, 633
Lsp1109I	GCAGC	3 cut(s)	26, 135, 154
MaeI	CTAG	2 cut(s)	348, 387
MaeII	ACGT	3 cut(s)	70, 100, 300
MalI	GATC	4 cut(s)	5, 11, 396, 512
MboI	GATC	4 cut(s)	3, 9, 394, 510
MboII	GAAGA	1 cut(s)	109
MflI	RGATCY	2 cut(s)	9, 394
MhlI	GDGCHC	2 cut(s)	151, 605
MluCI	AATT	1 cut(s)	506
MnlI	CCTC	7 cut(s)	59, 89, 137, 197, 269, 591, 642
MroNI	GCCGGC	1 cut(s)	565
MroXI	GAANNNNTTC	1 cut(s)	168
MseI	TTAA	2 cut(s)	525, 654
MslI	CAYNNNNRTG	1 cut(s)	284
MspA1I	CMGCKG	2 cut(s)	39, 219
MspI	CCGG	3 cut(s)	566, 584, 620
MspR9I	CCNGG	2 cut(s)	500, 585
MvaI	CCWGG	1 cut(s)	500
MvnI	CGCG	2 cut(s)	88, 265
MwoI	GCNNNNNNNGC	2 cut(s)	155, 649
NaeI	GCCGGC	1 cut(s)	567
NciI	CCSGG	1 cut(s)	585
NdeII	GATC	4 cut(s)	3, 9, 394, 510
NgoMIV	GCCGGC	1 cut(s)	565
NheI	GCTAGC	1 cut(s)	386
NlaIII	CATG	6 cut(s)	214, 286, 394, 415, 547, 611
NlaIV	GGNNCC	3 cut(s)	11, 396, 496
NspI	RCATGY	1 cut(s)	415
PagI	TCATGA	1 cut(s)	282
PciI	ACATGT	1 cut(s)	411
PdiI	GCCGGC	1 cut(s)	567
PdmI	GAANNNNTTC	1 cut(s)	168
PfoI	TCCNGGA	1 cut(s)	583
PkrI	GCNGC	4 cut(s)	41, 125, 144, 221
PscI	ACATGT	1 cut(s)	411
Psp6I	CCWGG	1 cut(s)	498
PspGI	CCWGG	1 cut(s)	498
PspN4I	GGNNCC	3 cut(s)	11, 396, 496
PspPI	GGNCC	1 cut(s)	494
PstI	CTGCAG	1 cut(s)	125
PsuI	RGATCY	2 cut(s)	9, 394
RsaI	GTAC	3 cut(s)	69, 362, 410
RsaNI	GTAC	3 cut(s)	68, 361, 409
RseI	CAYNNNNRTG	1 cut(s)	284
SaqAI	TTAA	2 cut(s)	525, 654
SatI	GCNGC	4 cut(s)	40, 124, 143, 220
Sau3AI	GATC	4 cut(s)	3, 9, 394, 510
Sau96I	GGNCC	1 cut(s)	494
ScrFI	CCNGG	2 cut(s)	500, 585
SduI	GDGCHC	2 cut(s)	151, 605
SetI	ASST	7 cut(s)	73, 103, 230, 236, 303, 467, 602
SfcI	CTRYAG	1 cut(s)	121
SinI	GGWCC	1 cut(s)	494
SmiMI	CAYNNNNRTG	1 cut(s)	284
SmlI	CTYRAG	3 cut(s)	107, 335, 644
SmoI	CTYRAG	3 cut(s)	107, 335, 644
Sse9I	AATT	1 cut(s)	506
SsiI	CCGC	5 cut(s)	19, 37, 86, 219, 263
SspMI	CTAG	2 cut(s)	348, 387
StyD4I	CCNGG	2 cut(s)	498, 583
StyI	CCWWGG	1 cut(s)	347
TaaI	ACNGT	1 cut(s)	628
TaiI	ACGT	3 cut(s)	73, 103, 303
TaqI	TCGA	2 cut(s)	315, 513
TasI	AATT	1 cut(s)	506
TatI	WGTACW	2 cut(s)	360, 408
TauI	GCSGC	1 cut(s)	222
Tru1I	TTAA	2 cut(s)	525, 654
Tru9I	TTAA	2 cut(s)	525, 654
TscAI	CASTG	2 cut(s)	208, 348
TseI	GCWGC	3 cut(s)	39, 123, 142
TspDTI	ATGAA	5 cut(s)	227, 295, 560, 624, 626
TspGWI	ACGGA	1 cut(s)	381
TspRI	CASTG	2 cut(s)	208, 348
VpaK11BI	GGWCC	1 cut(s)	494
XceI	RCATGY	1 cut(s)	415
XmaJI	CCTAGG	1 cut(s)	347
XmiI	GTMKAC	1 cut(s)	60
XmnI	GAANNNNTTC	1 cut(s)	168
XspI	CTAG	2 cut(s)	348, 387

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.