Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0017707

Physical Location & Seq

Genomic Coordinates Forward (+)

19000832 .. 19001875

Gene Structure 1044 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G131800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 855 bp

ATGCATACAATGCATAGGAAGAGGATGATGTTAGTCGCATTACCCTCACTTGTTATCCCCCTCTTGTTATTCATCATCTTCTTCAATGTTCAAGTAATAAGATCCCCATCAATTCCTTCCTCCAAAACAACCATCTTGCAAACCCAATTCAGCCTCTTGATTGGGATTTTAACTCGTGCCGACAACTACGATCGTCGCCATTTTCTCCGTCTTATATATGGCATCCAATCCTCTCCCATTGCCAAAATAGACGTCAAGTTCATCTTTTGTAACCTCACCAAACCCGAGCAACGCATACTAATTTCTCTAGAAATCCTTCGATTCAACGACATTATCATCCTCAATTGTACCGAAAACATGAACAATGGCAAAACCTACACCTATTTCTCTTCGCTCCCGGGCATCCTTCCCCGCAAATACGACTATGTCATGAAGGCGGATGACGATGTTTTCATTAGGCTCAAGCCACTTGCCTTGTCCCTCAAACCATTGCCTAGGGTGGACATGTACTACGGATTTGTAATCCCATGTGCTAGCATGAACCCATTTGTGGAGTACATGTCCGGTATGGGGTTTTTGTTGTCCTGGGATTTGGTTGAATGGATTGGAGAATCTGACATTCCTAGAAAGGAGATGTTTGGTCCCGAGGATAAGATGGTGGGAAAATGGTTGAAGATGGGAAGAAAGGCAAGGAACAGGTTTTCCAATAAGCCAGCAATGTATGATTATCCAGGAACAAATGGGAAGTGCTCACATGAGCTTATACCAGAAACTGTGGCTGTTCACAGGCTCAAGAGATGGGATCGTTGGTTGCACGTGCTTGAATTTTTCAATGTAACCAAACAAGTTCTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006029 GO:0006464 GO:0006486 GO:0006493 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008378 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009653 GO:0009791 GO:0009888 GO:0009987 GO:0010015 GO:0010053 GO:0010054 GO:0010154 GO:0010191 GO:0010192 GO:0010214 GO:0010384 GO:0010404 GO:0010405 GO:0012505 GO:0016740 GO:0016757 GO:0016758 GO:0018193 GO:0018208 GO:0018258 GO:0019538 GO:0021700 GO:0022414 GO:0022622 GO:0030154 GO:0032501 GO:0032502 GO:0034645 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043413 GO:0044036 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048316 GO:0048354 GO:0048359 GO:0048364 GO:0048468 GO:0048469 GO:0048608 GO:0048731 GO:0048764 GO:0048765 GO:0048856 GO:0048869 GO:0061458 GO:0070085 GO:0071554 GO:0071695 GO:0071704 GO:0080147 GO:0090558 GO:0090627 GO:0099402 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1905392 GO:1990714

KEGG Pathways

Metabolic & Signaling

ko00532 ko00534 ko01100 map00532 map00534 map01100

Pfam Domains

Protein Families

Galactosyl_T

Protein Analysis

285

Amino Acids

33.16

Weight (kDa)

9.61

Isoelectric Point (pI)

49.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017707)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g10190 FvH4_7g10191
prunus_persica	Prupe.2G131800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0347911
rosa_laevigata	RLG00000028704
rosa_multiflora	Rmu_ssc0000342.1_g000012
rosa_roxburghii	Rroxscaffold_4G00307380
rosa_rugosa	Rorug01G0190400
rosa_samantha	Rh1AG208800 Rh1BG173400 Rh1DG203400
rosa_wichuraiana	Rw1G017350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	255
AciI	CCGC	2 cut(s)	412, 437
AclWI	GGATC	2 cut(s)	96, 810
AcsI	RAATTY	1 cut(s)	824
AcvI	CACGTG	1 cut(s)	817
AcyI	GRCGYC	1 cut(s)	252
AfaI	GTAC	3 cut(s)	349, 509, 557
AfiI	CCNNNNNNNGG	2 cut(s)	550, 570
AflIII	ACRYGT	2 cut(s)	504, 558
AgsI	TTSAA	7 cut(s)	85, 92, 325, 599, 673, 824, 832
AjnI	CCWGG	2 cut(s)	584, 730
AloI	GAACNNNNNNTCC	2 cut(s)	686, 718
AluBI	AGCT	1 cut(s)	760
AluI	AGCT	1 cut(s)	760
Alw21I	GWGCWC	1 cut(s)	752
AlwI	GGATC	2 cut(s)	96, 810
AlwNI	CAGNNNCTG	1 cut(s)	773
Ama87I	CYCGRG	3 cut(s)	284, 397, 644
ApoI	RAATTY	1 cut(s)	824
ArsI	GACNNNNNNTTYG	2 cut(s)	237, 269
Asp700I	GAANNNNTTC	1 cut(s)	315
AspA2I	CCTAGG	1 cut(s)	494
AspS9I	GGNCC	1 cut(s)	641
AsuC2I	CCSGG	2 cut(s)	398, 399
AsuHPI	GGTGA	1 cut(s)	268
AsuNHI	GCTAGC	1 cut(s)	533
AvaI	CYCGRG	3 cut(s)	284, 397, 644
AvaII	GGWCC	1 cut(s)	641
AvrII	CCTAGG	1 cut(s)	494
BauI	CACGAG	1 cut(s)	174
BbrPI	CACGTG	1 cut(s)	817
Bbv12I	GWGCWC	1 cut(s)	752
BccI	CCATC	5 cut(s)	115, 140, 649, 670, 792
BciT130I	CCWGG	2 cut(s)	586, 732
BcnI	CCSGG	2 cut(s)	398, 399
BfaI	CTAG	4 cut(s)	308, 495, 534, 624
BlnI	CCTAGG	1 cut(s)	494
Bme1390I	CCNGG	4 cut(s)	398, 399, 586, 732
Bme18I	GGWCC	1 cut(s)	641
BmeT110I	CYCGRG	3 cut(s)	284, 397, 644
BmgT120I	GGNCC	1 cut(s)	641
BmiI	GGNNCC	1 cut(s)	643
BmrFI	CCNGG	4 cut(s)	398, 399, 586, 732
BmsI	GCATC	2 cut(s)	231, 411
BmtI	GCTAGC	1 cut(s)	537
BpuEI	CTTGAG	2 cut(s)	446, 776
BpuMI	CCSGG	2 cut(s)	398, 399
BsaAI	YACGTR	1 cut(s)	817
BsaBI	GATNNNNATC	1 cut(s)	106
BsaHI	GRCGYC	1 cut(s)	252
BsaJI	CCNNGG	4 cut(s)	397, 494, 585, 645
BsaWI	WCCGGW	1 cut(s)	563
BsaXI	ACNNNNNCTCC	2 cut(s)	545, 575
Bsc4I	CCNNNNNNNGG	2 cut(s)	550, 570
Bse3DI	GCAATG	3 cut(s)	237, 488, 723
Bse8I	GATNNNNATC	1 cut(s)	106
BseBI	CCWGG	2 cut(s)	586, 732
BseDI	CCNNGG	4 cut(s)	397, 494, 585, 645
BseGI	GGATG	5 cut(s)	30, 222, 336, 402, 445
BseJI	GATNNNNATC	1 cut(s)	106
BseLI	CCNNNNNNNGG	2 cut(s)	550, 570
BseMI	GCAATG	3 cut(s)	237, 488, 723
Bsh1285I	CGRYCG	1 cut(s)	193
BsiEI	CGRYCG	1 cut(s)	193
BsiHKAI	GWGCWC	1 cut(s)	752
BsiHKCI	CYCGRG	3 cut(s)	284, 397, 644
BsiSI	CCGG	2 cut(s)	398, 564
BslFI	GGGAC	2 cut(s)	463, 627
BslI	CCNNNNNNNGG	2 cut(s)	550, 570
BsmFI	GGGAC	2 cut(s)	463, 627
BsoBI	CYCGRG	3 cut(s)	284, 397, 644
Bsp1286I	GDGCHC	1 cut(s)	752
Bsp143I	GATC	3 cut(s)	101, 190, 802
BspACI	CCGC	2 cut(s)	412, 437
BspHI	TCATGA	1 cut(s)	429
BspLI	GGNNCC	1 cut(s)	643
BspOI	GCTAGC	1 cut(s)	537
BspPI	GGATC	2 cut(s)	96, 810
BsrDI	GCAATG	3 cut(s)	237, 488, 723
BssECI	CCNNGG	4 cut(s)	397, 494, 585, 645
BssMI	GATC	3 cut(s)	101, 190, 802
BssNI	GRCGYC	1 cut(s)	252
BssSI	CACGAG	1 cut(s)	174
BssT1I	CCWWGG	1 cut(s)	494
Bst2BI	CACGAG	1 cut(s)	174
Bst2UI	CCWGG	2 cut(s)	586, 732
Bst4CI	ACNGT	1 cut(s)	775
Bst6I	CTCTTC	2 cut(s)	14, 394
BstACI	GRCGYC	1 cut(s)	252
BstAPI	GCANNNNNTGC	1 cut(s)	10
BstBAI	YACGTR	1 cut(s)	817
BstC8I	GCNNGC	2 cut(s)	535, 714
BstF5I	GGATG	5 cut(s)	30, 222, 336, 402, 445
BstKTI	GATC	3 cut(s)	104, 193, 805
BstMBI	GATC	3 cut(s)	101, 190, 802
BstMCI	CGRYCG	1 cut(s)	193
BstMWI	GCNNNNNNNGC	1 cut(s)	10
BstNI	CCWGG	2 cut(s)	586, 732
BstNSI	RCATGY	2 cut(s)	508, 562
BstSCI	CCNGG	4 cut(s)	396, 397, 584, 730
BstX2I	RGATCY	1 cut(s)	101
BstYI	RGATCY	1 cut(s)	101
BtsCI	GGATG	5 cut(s)	30, 222, 336, 402, 445
Cac8I	GCNNGC	2 cut(s)	535, 714
CaiI	CAGNNNCTG	1 cut(s)	773
CciI	TCATGA	1 cut(s)	429
Cfr13I	GGNCC	1 cut(s)	641
Cfr9I	CCCGGG	1 cut(s)	397
Csp6I	GTAC	3 cut(s)	348, 508, 556
CspCI	CAANNNNNGTGG	2 cut(s)	456, 491
CviAII	CATG	7 cut(s)	358, 430, 505, 528, 538, 559, 755
CviJI	RGCY	7 cut(s)	153, 460, 466, 712, 760, 779, 790
CviKI_1	RGCY	7 cut(s)	153, 460, 466, 712, 760, 779, 790
CviQI	GTAC	3 cut(s)	348, 508, 556
DpnI	GATC	3 cut(s)	103, 192, 804
DpnII	GATC	3 cut(s)	101, 190, 802
Eam1104I	CTCTTC	2 cut(s)	14, 394
EarI	CTCTTC	2 cut(s)	14, 394
EciI	GGCGGA	1 cut(s)	452
Eco130I	CCWWGG	1 cut(s)	494
Eco47I	GGWCC	1 cut(s)	641
Eco72I	CACGTG	1 cut(s)	817
Eco88I	CYCGRG	3 cut(s)	284, 397, 644
EcoRII	CCWGG	2 cut(s)	584, 730
EcoT14I	CCWWGG	1 cut(s)	494
EcoT22I	ATGCAT	2 cut(s)	6, 15
ErhI	CCWWGG	1 cut(s)	494
FaeI	CATG	7 cut(s)	361, 433, 508, 531, 541, 562, 758
FalI	AAGNNNNNCTT	2 cut(s)	248, 280
FaqI	GGGAC	2 cut(s)	463, 627
FatI	CATG	7 cut(s)	357, 429, 504, 527, 537, 558, 754
FauI	CCCGC	1 cut(s)	419
FokI	GGATG	5 cut(s)	37, 209, 323, 389, 452
FspBI	CTAG	4 cut(s)	308, 495, 534, 624
HapII	CCGG	2 cut(s)	398, 564
Hin1I	GRCGYC	1 cut(s)	252
Hin1II	CATG	7 cut(s)	361, 433, 508, 531, 541, 562, 758
HinfI	GANTC	2 cut(s)	321, 611
HpaII	CCGG	2 cut(s)	398, 564
HphI	GGTGA	1 cut(s)	268
Hpy166II	GTNNAC	2 cut(s)	502, 784
Hpy188I	TCNGA	1 cut(s)	616
Hpy188III	TCNNGA	5 cut(s)	157, 308, 430, 644, 793
Hpy8I	GTNNAC	2 cut(s)	502, 784
Hpy99I	CGWCG	1 cut(s)	198
HpyAV	CCTTC	4 cut(s)	126, 326, 416, 427
HpyCH4III	ACNGT	1 cut(s)	775
HpyCH4IV	ACGT	2 cut(s)	252, 816
HpyCH4V	TGCA	4 cut(s)	4, 13, 139, 814
HpyF10VI	GCNNNNNNNGC	1 cut(s)	10
HpySE526I	ACGT	2 cut(s)	252, 816
Hsp92I	GRCGYC	1 cut(s)	252
Hsp92II	CATG	7 cut(s)	361, 433, 508, 531, 541, 562, 758
Kzo9I	GATC	3 cut(s)	101, 190, 802
LmnI	GCTCC	1 cut(s)	399
LweI	GCATC	2 cut(s)	231, 411
MaeI	CTAG	4 cut(s)	308, 495, 534, 624
MaeII	ACGT	2 cut(s)	252, 816
MaeIII	GTNAC	2 cut(s)	269, 835
MalI	GATC	3 cut(s)	103, 192, 804
MboI	GATC	3 cut(s)	101, 190, 802
MboII	GAAGA	6 cut(s)	31, 70, 73, 381, 685, 693
MfeI	CAATTG	1 cut(s)	343
MflI	RGATCY	1 cut(s)	101
MhlI	GDGCHC	1 cut(s)	752
MluCI	AATT	5 cut(s)	111, 146, 300, 343, 824
Mph1103I	ATGCAT	2 cut(s)	6, 15
MroXI	GAANNNNTTC	1 cut(s)	315
MseI	TTAA	1 cut(s)	170
MspI	CCGG	2 cut(s)	398, 564
MspR9I	CCNGG	4 cut(s)	398, 399, 586, 732
MunI	CAATTG	1 cut(s)	343
MvaI	CCWGG	2 cut(s)	586, 732
MwoI	GCNNNNNNNGC	1 cut(s)	10
NciI	CCSGG	2 cut(s)	398, 399
NdeII	GATC	3 cut(s)	101, 190, 802
NheI	GCTAGC	1 cut(s)	533
NlaIII	CATG	7 cut(s)	361, 433, 508, 531, 541, 562, 758
NlaIV	GGNNCC	1 cut(s)	643
NsiI	ATGCAT	2 cut(s)	6, 15
NspI	RCATGY	2 cut(s)	508, 562
PagI	TCATGA	1 cut(s)	429
PciI	ACATGT	2 cut(s)	504, 558
PdmI	GAANNNNTTC	1 cut(s)	315
PfeI	GAWTC	2 cut(s)	321, 611
PflFI	GACNNNGTC	1 cut(s)	425
PfoI	TCCNGGA	1 cut(s)	730
Ple19I	CGATCG	1 cut(s)	193
PmaCI	CACGTG	1 cut(s)	817
PmlI	CACGTG	1 cut(s)	817
Ppu21I	YACGTR	1 cut(s)	817
PscI	ACATGT	2 cut(s)	504, 558
Psp6I	CCWGG	2 cut(s)	584, 730
PspCI	CACGTG	1 cut(s)	817
PspGI	CCWGG	2 cut(s)	584, 730
PspN4I	GGNNCC	1 cut(s)	643
PspPI	GGNCC	1 cut(s)	641
PstNI	CAGNNNCTG	1 cut(s)	773
PsuI	RGATCY	1 cut(s)	101
PsyI	GACNNNGTC	1 cut(s)	425
PvuI	CGATCG	1 cut(s)	193
RsaI	GTAC	3 cut(s)	349, 509, 557
RsaNI	GTAC	3 cut(s)	348, 508, 556
SaqAI	TTAA	1 cut(s)	170
Sau3AI	GATC	3 cut(s)	101, 190, 802
Sau96I	GGNCC	1 cut(s)	641
ScrFI	CCNGG	4 cut(s)	398, 399, 586, 732
SduI	GDGCHC	1 cut(s)	752
SetI	ASST	7 cut(s)	255, 276, 377, 383, 701, 762, 819
SfaNI	GCATC	2 cut(s)	231, 411
SinI	GGWCC	1 cut(s)	641
SmaI	CCCGGG	1 cut(s)	399
SmlI	CTYRAG	2 cut(s)	461, 791
SmoI	CTYRAG	2 cut(s)	461, 791
Sse9I	AATT	5 cut(s)	111, 146, 300, 343, 824
SsiI	CCGC	2 cut(s)	412, 437
SspMI	CTAG	4 cut(s)	308, 495, 534, 624
StyD4I	CCNGG	4 cut(s)	396, 397, 584, 730
StyI	CCWWGG	1 cut(s)	494
TaaI	ACNGT	1 cut(s)	775
TaiI	ACGT	2 cut(s)	255, 819
TaqI	TCGA	1 cut(s)	319
TasI	AATT	5 cut(s)	111, 146, 300, 343, 824
TatI	WGTACW	2 cut(s)	507, 555
TfiI	GAWTC	2 cut(s)	321, 611
Tru1I	TTAA	1 cut(s)	170
Tru9I	TTAA	1 cut(s)	170
TspDTI	ATGAA	6 cut(s)	61, 250, 374, 442, 446, 554
TspGWI	ACGGA	2 cut(s)	197, 528
TspMI	CCCGGG	1 cut(s)	397
Tth111I	GACNNNGTC	1 cut(s)	425
VpaK11BI	GGWCC	1 cut(s)	641
XapI	RAATTY	1 cut(s)	824
XbaI	TCTAGA	1 cut(s)	307
XceI	RCATGY	2 cut(s)	508, 562
XmaI	CCCGGG	1 cut(s)	397
XmaJI	CCTAGG	1 cut(s)	494
XmnI	GAANNNNTTC	1 cut(s)	315
XspI	CTAG	4 cut(s)	308, 495, 534, 624
ZraI	GACGTC	1 cut(s)	253
Zsp2I	ATGCAT	2 cut(s)	6, 15

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.