Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0017707

Physical Location & Seq

Genomic Coordinates Forward (+)

38436362 .. 38437226

Gene Structure 865 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G017350.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 789 bp

ATGAAGAGGAACAGATGGATAGTCCTAGTTACATTACCCTCCCTCATTCTATCCCTCTTGCTATTCATCATCTTCTTCAATGTTCAGTACTTTCTAAAGCCTCCACCACCAAATCCTTCCTCAAATTATCCACCATGTACCCTAATCAAACCCAATTCATCATCTCCTCTCGCCACCATCCACGTCAAGTTCGTCTTCTGCAGCCTCACAAAACCCGAGCAGCGTGTCCTAATCGCCCTCGAAATGCTTCGTTTTGATGACATCCTCATTCTCAACTGCACTGAGAACATGAACAGCGGCAAAACCTACACCTACTTCTCCTCGCTCCCCCAACTCCTCCCTCGAAAATACGACTACGTAATGAAGGCAGACGACGACGTTTTCATCCGGCTCGAGCCGCTTGCCTTGTCGCTCAAGGCACTGCCTAGGGTGGATTTGTACTATGGATTTGTTATCCCTTGTGCTAGCATGAATCCCTTTGTGGAGTACATGTCCGGGATGGGGTTTTTGTTGTTGTGGGATTTGGTGGAGTGGATTGGAAGCTCTGAAATTCCCAAGGAGAGTGTGTTTGGTCCCGAGGACAAGTTGGTCGGAAAATGGTTGAAGATGGGAAACAAGGCGAAGAACAGGTTTAGTAATAAGCCGGCCATGTATGATTATCCGGGAACAAATGGGAGGTGCTCGCATGAGCTTATACCGGAGACGGTGGCTGTTCATAGGCTCAAGAGGTGGGATCAGTGGTTGCGTGTGCTTGAATATTTCAATGTAACCAAGGGATTAAATCTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006029 GO:0006464 GO:0006486 GO:0006493 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008378 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009653 GO:0009791 GO:0009888 GO:0009987 GO:0010015 GO:0010053 GO:0010054 GO:0010154 GO:0010191 GO:0010192 GO:0010214 GO:0010384 GO:0010404 GO:0010405 GO:0012505 GO:0016740 GO:0016757 GO:0016758 GO:0018193 GO:0018208 GO:0018258 GO:0019538 GO:0021700 GO:0022414 GO:0022622 GO:0030154 GO:0032501 GO:0032502 GO:0034645 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043413 GO:0044036 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048316 GO:0048354 GO:0048359 GO:0048364 GO:0048468 GO:0048469 GO:0048608 GO:0048731 GO:0048764 GO:0048765 GO:0048856 GO:0048869 GO:0061458 GO:0070085 GO:0071554 GO:0071695 GO:0071704 GO:0080147 GO:0090558 GO:0090627 GO:0099402 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1905392 GO:1990714

KEGG Pathways

Metabolic & Signaling

ko00532 ko00534 ko01100 map00532 map00534 map01100

Pfam Domains

Protein Families

Galactosyl_T

Protein Analysis

262

Amino Acids

30.25

Weight (kDa)

9.08

Isoelectric Point (pI)

47.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017707)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g10190 FvH4_7g10191
prunus_persica	Prupe.2G131800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0347911
rosa_laevigata	RLG00000028704
rosa_multiflora	Rmu_ssc0000342.1_g000012
rosa_roxburghii	Rroxscaffold_4G00307380
rosa_rugosa	Rorug01G0190400
rosa_samantha	Rh1AG208800 Rh1BG173400 Rh1DG203400
rosa_wichuraiana	Rw1G017350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	587
AciI	CCGC	2 cut(s)	297, 398
AclWI	GGATC	1 cut(s)	741
AcoI	YGGCCR	1 cut(s)	645
AcsI	RAATTY	1 cut(s)	549
AfaI	GTAC	4 cut(s)	89, 139, 440, 488
AfiI	CCNNNNNNNGG	1 cut(s)	501
AflIII	ACRYGT	1 cut(s)	489
AgsI	TTSAA	4 cut(s)	79, 604, 755, 763
AjiI	CACGTC	1 cut(s)	184
AluBI	AGCT	2 cut(s)	543, 691
AluI	AGCT	2 cut(s)	543, 691
Alw21I	GWGCWC	1 cut(s)	683
Alw26I	GTCTC	1 cut(s)	695
AlwI	GGATC	1 cut(s)	741
Ama87I	CYCGRG	3 cut(s)	215, 392, 575
AoxI	GGCC	1 cut(s)	645
ApeKI	GCWGC	2 cut(s)	201, 220
ApoI	RAATTY	1 cut(s)	549
Asp700I	GAANNNNTTC	1 cut(s)	246
AspA2I	CCTAGG	1 cut(s)	425
AspS9I	GGNCC	1 cut(s)	572
AsuC2I	CCSGG	2 cut(s)	496, 663
AsuNHI	GCTAGC	1 cut(s)	464
AvaI	CYCGRG	3 cut(s)	215, 392, 575
AvaII	GGWCC	1 cut(s)	572
AvrII	CCTAGG	1 cut(s)	425
BbsI	GAAGAC	1 cut(s)	187
Bbv12I	GWGCWC	1 cut(s)	683
BbvI	GCAGC	2 cut(s)	213, 232
BccI	CCATC	4 cut(s)	9, 185, 493, 601
BcgI	CGANNNNNNTGC	2 cut(s)	383, 417
BcnI	CCSGG	2 cut(s)	496, 663
BcoDI	GTCTC	1 cut(s)	695
BfaI	CTAG	4 cut(s)	26, 426, 465, 787
BfmI	CTRYAG	1 cut(s)	199
BisI	GCNGC	4 cut(s)	202, 221, 298, 398
BlnI	CCTAGG	1 cut(s)	425
BlsI	GCNGC	4 cut(s)	203, 222, 299, 399
BmcAI	AGTACT	1 cut(s)	89
Bme1390I	CCNGG	2 cut(s)	496, 663
Bme18I	GGWCC	1 cut(s)	572
BmeT110I	CYCGRG	3 cut(s)	215, 392, 575
BmgBI	CACGTC	1 cut(s)	184
BmgT120I	GGNCC	1 cut(s)	572
BmiI	GGNNCC	1 cut(s)	574
BmrFI	CCNGG	2 cut(s)	496, 663
BmtI	GCTAGC	1 cut(s)	468
BpiI	GAAGAC	1 cut(s)	187
BpuEI	CTTGAG	2 cut(s)	398, 707
BpuMI	CCSGG	2 cut(s)	496, 663
BsaAI	YACGTR	1 cut(s)	358
BsaJI	CCNNGG	4 cut(s)	425, 555, 576, 771
BsaWI	WCCGGW	1 cut(s)	697
BsaXI	ACNNNNNCTCC	4 cut(s)	476, 506, 551, 581
Bsc4I	CCNNNNNNNGG	1 cut(s)	501
Bse118I	RCCGGY	1 cut(s)	643
BseDI	CCNNGG	4 cut(s)	425, 555, 576, 771
BseGI	GGATG	4 cut(s)	177, 261, 384, 504
BseLI	CCNNNNNNNGG	1 cut(s)	501
BseMII	CTCAG	1 cut(s)	273
BseRI	GAGGAG	3 cut(s)	156, 310, 326
BseXI	GCAGC	2 cut(s)	213, 232
BsgI	GTGCAG	1 cut(s)	262
BshFI	GGCC	1 cut(s)	647
BsiHKAI	GWGCWC	1 cut(s)	683
BsiHKCI	CYCGRG	3 cut(s)	215, 392, 575
BsiSI	CCGG	5 cut(s)	388, 495, 644, 662, 698
BslFI	GGGAC	1 cut(s)	558
BslI	CCNNNNNNNGG	1 cut(s)	501
BsmAI	GTCTC	1 cut(s)	695
BsmBI	CGTCTC	1 cut(s)	695
BsmFI	GGGAC	1 cut(s)	558
BsnI	GGCC	1 cut(s)	647
BsoBI	CYCGRG	3 cut(s)	215, 392, 575
Bsp1286I	GDGCHC	1 cut(s)	683
Bsp143I	GATC	1 cut(s)	733
BspACI	CCGC	2 cut(s)	297, 398
BspANI	GGCC	1 cut(s)	647
BspCNI	CTCAG	1 cut(s)	274
BspLI	GGNNCC	1 cut(s)	574
BspMAI	CTGCAG	1 cut(s)	203
BspOI	GCTAGC	1 cut(s)	468
BspPI	GGATC	1 cut(s)	741
BsrFI	RCCGGY	1 cut(s)	643
BssAI	RCCGGY	1 cut(s)	643
BssECI	CCNNGG	4 cut(s)	425, 555, 576, 771
BssMI	GATC	1 cut(s)	733
BssT1I	CCWWGG	3 cut(s)	425, 555, 771
Bst4CI	ACNGT	1 cut(s)	706
BstBAI	YACGTR	1 cut(s)	358
BstC8I	GCNNGC	4 cut(s)	402, 466, 645, 683
BstDEI	CTNAG	1 cut(s)	282
BstF5I	GGATG	4 cut(s)	177, 261, 384, 504
BstKTI	GATC	1 cut(s)	736
BstMAI	GTCTC	1 cut(s)	695
BstMBI	GATC	1 cut(s)	733
BstMWI	GCNNNNNNNGC	1 cut(s)	397
BstNSI	RCATGY	1 cut(s)	493
BstSCI	CCNGG	2 cut(s)	494, 661
BstSFI	CTRYAG	1 cut(s)	199
BstSNI	TACGTA	1 cut(s)	358
BstV1I	GCAGC	2 cut(s)	213, 232
BstV2I	GAAGAC	1 cut(s)	187
BsuRI	GGCC	1 cut(s)	647
BtrI	CACGTC	1 cut(s)	184
BtsCI	GGATG	4 cut(s)	177, 261, 384, 504
BtsI	GCAGTG	1 cut(s)	419
BtsIMutI	CAGTG	3 cut(s)	279, 419, 743
Cac8I	GCNNGC	4 cut(s)	402, 466, 645, 683
Cfr10I	RCCGGY	1 cut(s)	643
Cfr13I	GGNCC	1 cut(s)	572
Csp6I	GTAC	4 cut(s)	88, 138, 439, 487
CviAII	CATG	6 cut(s)	135, 289, 469, 490, 649, 686
CviQI	GTAC	4 cut(s)	88, 138, 439, 487
DdeI	CTNAG	1 cut(s)	282
DpnI	GATC	1 cut(s)	735
DpnII	GATC	1 cut(s)	733
DrdI	GACNNNNNNGTC	1 cut(s)	587
DseDI	GACNNNNNNGTC	1 cut(s)	587
EaeI	YGGCCR	1 cut(s)	645
Eco105I	TACGTA	1 cut(s)	358
Eco130I	CCWWGG	3 cut(s)	425, 555, 771
Eco47I	GGWCC	1 cut(s)	572
Eco88I	CYCGRG	3 cut(s)	215, 392, 575
EcoT14I	CCWWGG	3 cut(s)	425, 555, 771
ErhI	CCWWGG	3 cut(s)	425, 555, 771
Esp3I	CGTCTC	1 cut(s)	695
FaeI	CATG	6 cut(s)	138, 292, 472, 493, 652, 689
FalI	AAGNNNNNCTT	2 cut(s)	179, 211
FaqI	GGGAC	1 cut(s)	558
FatI	CATG	6 cut(s)	134, 288, 468, 489, 648, 685
Fnu4HI	GCNGC	4 cut(s)	202, 221, 298, 398
FokI	GGATG	4 cut(s)	164, 248, 371, 511
Fsp4HI	GCNGC	4 cut(s)	202, 221, 298, 398
FspBI	CTAG	4 cut(s)	26, 426, 465, 787
GluI	GCNGC	4 cut(s)	202, 221, 298, 398
HaeIII	GGCC	1 cut(s)	647
HapII	CCGG	5 cut(s)	388, 495, 644, 662, 698
Hin1II	CATG	6 cut(s)	138, 292, 472, 493, 652, 689
HinfI	GANTC	1 cut(s)	472
HpaII	CCGG	5 cut(s)	388, 495, 644, 662, 698
Hpy188I	TCNGA	2 cut(s)	547, 593
Hpy188III	TCNNGA	2 cut(s)	575, 724
Hpy99I	CGWCG	2 cut(s)	377, 380
HpyAV	CCTTC	2 cut(s)	126, 358
HpyCH4III	ACNGT	1 cut(s)	706
HpyCH4IV	ACGT	3 cut(s)	183, 357, 378
HpyCH4V	TGCA	2 cut(s)	201, 279
HpyF10VI	GCNNNNNNNGC	1 cut(s)	397
HpyF3I	CTNAG	1 cut(s)	282
HpySE526I	ACGT	3 cut(s)	183, 357, 378
Hsp92II	CATG	6 cut(s)	138, 292, 472, 493, 652, 689
KroI	GCCGGC	1 cut(s)	643
KroNI	GCCGGC	1 cut(s)	645
Kzo9I	GATC	1 cut(s)	733
LmnI	GCTCC	1 cut(s)	330
LpnPI	CCDG	6 cut(s)	401, 508, 613, 657, 675, 711
Lsp1109I	GCAGC	2 cut(s)	213, 232
MaeI	CTAG	4 cut(s)	26, 426, 465, 787
MaeII	ACGT	3 cut(s)	183, 357, 378
MaeIII	GTNAC	2 cut(s)	28, 766
MalI	GATC	1 cut(s)	735
MboI	GATC	1 cut(s)	733
MboII	GAAGA	6 cut(s)	16, 64, 67, 187, 616, 634
MhlI	GDGCHC	1 cut(s)	683
MluCI	AATT	3 cut(s)	124, 154, 549
MmeI	TCCRAC	1 cut(s)	571
MroNI	GCCGGC	1 cut(s)	643
MroXI	GAANNNNTTC	1 cut(s)	246
MseI	TTAA	1 cut(s)	779
MspA1I	CMGCKG	1 cut(s)	297
MspI	CCGG	5 cut(s)	388, 495, 644, 662, 698
MspR9I	CCNGG	2 cut(s)	496, 663
MwoI	GCNNNNNNNGC	1 cut(s)	397
NaeI	GCCGGC	1 cut(s)	645
NciI	CCSGG	2 cut(s)	496, 663
NdeII	GATC	1 cut(s)	733
NgoMIV	GCCGGC	1 cut(s)	643
NheI	GCTAGC	1 cut(s)	464
NlaIII	CATG	6 cut(s)	138, 292, 472, 493, 652, 689
NlaIV	GGNNCC	1 cut(s)	574
NspI	RCATGY	1 cut(s)	493
PaeR7I	CTCGAG	1 cut(s)	392
PciI	ACATGT	1 cut(s)	489
PcsI	WCGNNNNNNNCGW	1 cut(s)	189
PdiI	GCCGGC	1 cut(s)	645
PdmI	GAANNNNTTC	1 cut(s)	246
PfeI	GAWTC	1 cut(s)	472
PfoI	TCCNGGA	2 cut(s)	494, 661
PkrI	GCNGC	4 cut(s)	203, 222, 299, 399
Ppu21I	YACGTR	1 cut(s)	358
PscI	ACATGT	1 cut(s)	489
PspN4I	GGNNCC	1 cut(s)	574
PspPI	GGNCC	1 cut(s)	572
PspXI	VCTCGAGB	1 cut(s)	392
PstI	CTGCAG	1 cut(s)	203
RsaI	GTAC	4 cut(s)	89, 139, 440, 488
RsaNI	GTAC	4 cut(s)	88, 138, 439, 487
SaqAI	TTAA	1 cut(s)	779
SatI	GCNGC	4 cut(s)	202, 221, 298, 398
Sau3AI	GATC	1 cut(s)	733
Sau96I	GGNCC	1 cut(s)	572
ScaI	AGTACT	1 cut(s)	89
ScrFI	CCNGG	2 cut(s)	496, 663
SduI	GDGCHC	1 cut(s)	683
SfcI	CTRYAG	1 cut(s)	199
Sfr274I	CTCGAG	1 cut(s)	392
SinI	GGWCC	1 cut(s)	572
SlaI	CTCGAG	1 cut(s)	392
SmlI	CTYRAG	3 cut(s)	392, 413, 722
SmoI	CTYRAG	3 cut(s)	392, 413, 722
SnaBI	TACGTA	1 cut(s)	358
Sse9I	AATT	3 cut(s)	124, 154, 549
SsiI	CCGC	2 cut(s)	297, 398
SspI	AATATT	1 cut(s)	758
SspMI	CTAG	4 cut(s)	26, 426, 465, 787
StyD4I	CCNGG	2 cut(s)	494, 661
StyI	CCWWGG	3 cut(s)	425, 555, 771
TaaI	ACNGT	1 cut(s)	706
TaiI	ACGT	3 cut(s)	186, 360, 381
TaqI	TCGA	3 cut(s)	240, 343, 393
TasI	AATT	3 cut(s)	124, 154, 549
TatI	WGTACW	3 cut(s)	87, 438, 486
TauI	GCSGC	2 cut(s)	300, 400
TfiI	GAWTC	1 cut(s)	472
Tru1I	TTAA	1 cut(s)	779
Tru9I	TTAA	1 cut(s)	779
TscAI	CASTG	3 cut(s)	286, 426, 743
TseI	GCWGC	2 cut(s)	201, 220
TspDTI	ATGAA	8 cut(s)	17, 55, 147, 305, 373, 377, 485, 704
TspRI	CASTG	3 cut(s)	286, 426, 743
VpaK11BI	GGWCC	1 cut(s)	572
XapI	RAATTY	1 cut(s)	549
XceI	RCATGY	1 cut(s)	493
XhoI	CTCGAG	1 cut(s)	392
XmaJI	CCTAGG	1 cut(s)	425
XmnI	GAANNNNTTC	1 cut(s)	246
XspI	CTAG	4 cut(s)	26, 426, 465, 787
ZrmI	AGTACT	1 cut(s)	89

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.