Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000342.1

Orthogroup ID

OG0017707

Physical Location & Seq

Genomic Coordinates Forward (+)

73907 .. 74638

Gene Structure 732 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000342.1_g000012.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 732 bp

atgtaccctaatcaaacccaattcagcctcatgatcgggatcctaacccgggcggacaactacgaccgccgccacttcctccgcctcatctacggcatccagtcatctcctctcgccaccatccacgtcaagttcgtcttctgcagcctcacaaaacccgagcagcgtgtcctaatcgccctcgaaatgcttcgttttgatgacatcctcattctcaactgcactgagaacatgaacagcggcaaaacctacacctacttctcctcgctcccccaactcctccctcgaaaatacgactacgtaatgaaggcagacgacgacgttttcatccggctcgagccgcttgccttgtcgctcaaggcactgcctagggtggatttgtactatggatttgttatcccttgtgctagcttgaatccctttgtggagtacatgtccgggatggggtttttgttgtcgtgggatttggtggagtggattggaagctctgaaattcccaaggagagtgtgtttggtcccgaggacaagttggtcggaaaatggttgaagatgggaaacaaggcgaagaacaggtttagtaataagccggccatgtatgattatccgggaacaaatgggaggtgctcgcatgagcttataccggagacggtggctgttcataggctcaagaggtgggatcagtggttgcgtgtgcttgaatatttcaatgtaaccaagggattaaatctctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006029 GO:0006464 GO:0006486 GO:0006493 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008378 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009653 GO:0009791 GO:0009888 GO:0009987 GO:0010015 GO:0010053 GO:0010054 GO:0010154 GO:0010191 GO:0010192 GO:0010214 GO:0010384 GO:0010404 GO:0010405 GO:0012505 GO:0016740 GO:0016757 GO:0016758 GO:0018193 GO:0018208 GO:0018258 GO:0019538 GO:0021700 GO:0022414 GO:0022622 GO:0030154 GO:0032501 GO:0032502 GO:0034645 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043413 GO:0044036 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048316 GO:0048354 GO:0048359 GO:0048364 GO:0048468 GO:0048469 GO:0048608 GO:0048731 GO:0048764 GO:0048765 GO:0048856 GO:0048869 GO:0061458 GO:0070085 GO:0071554 GO:0071695 GO:0071704 GO:0080147 GO:0090558 GO:0090627 GO:0099402 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1905392 GO:1990714

KEGG Pathways

Metabolic & Signaling

ko00532 ko00534 ko01100 map00532 map00534 map01100

Pfam Domains

Protein Families

Galactosyl_T

Protein Analysis

243

Amino Acids

28.21

Weight (kDa)

8.77

Isoelectric Point (pI)

43.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017707)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g10190 FvH4_7g10191
prunus_persica	Prupe.2G131800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0347911
rosa_laevigata	RLG00000028704
rosa_multiflora	Rmu_ssc0000342.1_g000012
rosa_roxburghii	Rroxscaffold_4G00307380
rosa_rugosa	Rorug01G0190400
rosa_samantha	Rh1AG208800 Rh1BG173400 Rh1DG203400
rosa_wichuraiana	Rw1G017350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	530
AciI	CCGC	6 cut(s)	53, 67, 70, 82, 240, 341
AclWI	GGATC	3 cut(s)	34, 47, 684
AcoI	YGGCCR	1 cut(s)	588
AcsI	RAATTY	1 cut(s)	492
AfaI	GTAC	3 cut(s)	5, 383, 431
AfiI	CCNNNNNNNGG	2 cut(s)	49, 444
AflIII	ACRYGT	1 cut(s)	432
AgsI	TTSAA	4 cut(s)	415, 547, 698, 706
AjiI	CACGTC	1 cut(s)	127
AluBI	AGCT	3 cut(s)	411, 486, 634
AluI	AGCT	3 cut(s)	411, 486, 634
Alw21I	GWGCWC	1 cut(s)	626
Alw26I	GTCTC	1 cut(s)	638
AlwI	GGATC	3 cut(s)	34, 47, 684
Ama87I	CYCGRG	4 cut(s)	48, 158, 335, 518
AoxI	GGCC	1 cut(s)	588
ApeKI	GCWGC	2 cut(s)	144, 163
ApoI	RAATTY	1 cut(s)	492
Asp700I	GAANNNNTTC	1 cut(s)	189
AspA2I	CCTAGG	1 cut(s)	368
AspS9I	GGNCC	1 cut(s)	515
AsuC2I	CCSGG	4 cut(s)	49, 50, 439, 606
AsuNHI	GCTAGC	1 cut(s)	407
AvaI	CYCGRG	4 cut(s)	48, 158, 335, 518
AvaII	GGWCC	1 cut(s)	515
AvrII	CCTAGG	1 cut(s)	368
BamHI	GGATCC	1 cut(s)	39
BbsI	GAAGAC	1 cut(s)	130
Bbv12I	GWGCWC	1 cut(s)	626
BbvI	GCAGC	2 cut(s)	156, 175
BccI	CCATC	3 cut(s)	128, 436, 544
BceAI	ACGGC	1 cut(s)	109
BcgI	CGANNNNNNTGC	2 cut(s)	326, 360
BcnI	CCSGG	4 cut(s)	49, 50, 439, 606
BcoDI	GTCTC	1 cut(s)	638
BfaI	CTAG	3 cut(s)	369, 408, 730
BfmI	CTRYAG	1 cut(s)	142
BisI	GCNGC	5 cut(s)	70, 145, 164, 241, 341
BlnI	CCTAGG	1 cut(s)	368
BlsI	GCNGC	5 cut(s)	71, 146, 165, 242, 342
Bme1390I	CCNGG	4 cut(s)	49, 50, 439, 606
Bme18I	GGWCC	1 cut(s)	515
BmeT110I	CYCGRG	4 cut(s)	48, 158, 335, 518
BmgBI	CACGTC	1 cut(s)	127
BmgT120I	GGNCC	1 cut(s)	515
BmiI	GGNNCC	2 cut(s)	41, 517
BmrFI	CCNGG	4 cut(s)	49, 50, 439, 606
BmsI	GCATC	1 cut(s)	105
BmtI	GCTAGC	1 cut(s)	411
BpiI	GAAGAC	1 cut(s)	130
BpuEI	CTTGAG	2 cut(s)	341, 650
BpuMI	CCSGG	4 cut(s)	49, 50, 439, 606
BsaAI	YACGTR	1 cut(s)	301
BsaBI	GATNNNNATC	1 cut(s)	38
BsaJI	CCNNGG	5 cut(s)	48, 368, 498, 519, 714
BsaWI	WCCGGW	1 cut(s)	640
BsaXI	ACNNNNNCTCC	4 cut(s)	419, 449, 494, 524
Bsc4I	CCNNNNNNNGG	2 cut(s)	49, 444
Bse118I	RCCGGY	1 cut(s)	586
Bse1I	ACTGG	1 cut(s)	100
Bse8I	GATNNNNATC	1 cut(s)	38
BseDI	CCNNGG	5 cut(s)	48, 368, 498, 519, 714
BseGI	GGATG	5 cut(s)	96, 120, 204, 327, 447
BseJI	GATNNNNATC	1 cut(s)	38
BseLI	CCNNNNNNNGG	2 cut(s)	49, 444
BseMII	CTCAG	1 cut(s)	216
BseNI	ACTGG	1 cut(s)	100
BseRI	GAGGAG	3 cut(s)	99, 253, 269
BseXI	GCAGC	2 cut(s)	156, 175
BsgI	GTGCAG	1 cut(s)	205
Bsh1285I	CGRYCG	1 cut(s)	67
BshFI	GGCC	1 cut(s)	590
BsiEI	CGRYCG	1 cut(s)	67
BsiHKAI	GWGCWC	1 cut(s)	626
BsiHKCI	CYCGRG	4 cut(s)	48, 158, 335, 518
BsiSI	CCGG	6 cut(s)	49, 331, 438, 587, 605, 641
BslFI	GGGAC	1 cut(s)	501
BslI	CCNNNNNNNGG	2 cut(s)	49, 444
BsmAI	GTCTC	1 cut(s)	638
BsmBI	CGTCTC	1 cut(s)	638
BsmFI	GGGAC	1 cut(s)	501
BsnI	GGCC	1 cut(s)	590
BsoBI	CYCGRG	4 cut(s)	48, 158, 335, 518
Bsp1286I	GDGCHC	1 cut(s)	626
Bsp143I	GATC	3 cut(s)	33, 39, 676
BspACI	CCGC	6 cut(s)	53, 67, 70, 82, 240, 341
BspANI	GGCC	1 cut(s)	590
BspCNI	CTCAG	1 cut(s)	217
BspHI	TCATGA	1 cut(s)	30
BspLI	GGNNCC	2 cut(s)	41, 517
BspMAI	CTGCAG	1 cut(s)	146
BspOI	GCTAGC	1 cut(s)	411
BspPI	GGATC	3 cut(s)	34, 47, 684
BsrFI	RCCGGY	1 cut(s)	586
BsrI	ACTGG	1 cut(s)	100
BssAI	RCCGGY	1 cut(s)	586
BssECI	CCNNGG	5 cut(s)	48, 368, 498, 519, 714
BssMI	GATC	3 cut(s)	33, 39, 676
BssT1I	CCWWGG	3 cut(s)	368, 498, 714
Bst4CI	ACNGT	1 cut(s)	649
BstBAI	YACGTR	1 cut(s)	301
BstC8I	GCNNGC	4 cut(s)	345, 409, 588, 626
BstDEI	CTNAG	1 cut(s)	225
BstF5I	GGATG	5 cut(s)	96, 120, 204, 327, 447
BstKTI	GATC	3 cut(s)	36, 42, 679
BstMAI	GTCTC	1 cut(s)	638
BstMBI	GATC	3 cut(s)	33, 39, 676
BstMCI	CGRYCG	1 cut(s)	67
BstMWI	GCNNNNNNNGC	1 cut(s)	340
BstNSI	RCATGY	1 cut(s)	436
BstSCI	CCNGG	4 cut(s)	47, 48, 437, 604
BstSFI	CTRYAG	1 cut(s)	142
BstSNI	TACGTA	1 cut(s)	301
BstV1I	GCAGC	2 cut(s)	156, 175
BstV2I	GAAGAC	1 cut(s)	130
BstX2I	RGATCY	1 cut(s)	39
BstYI	RGATCY	1 cut(s)	39
BsuRI	GGCC	1 cut(s)	590
BtrI	CACGTC	1 cut(s)	127
BtsCI	GGATG	5 cut(s)	96, 120, 204, 327, 447
BtsI	GCAGTG	1 cut(s)	362
BtsIMutI	CAGTG	3 cut(s)	222, 362, 686
Cac8I	GCNNGC	4 cut(s)	345, 409, 588, 626
CciI	TCATGA	1 cut(s)	30
Cfr10I	RCCGGY	1 cut(s)	586
Cfr13I	GGNCC	1 cut(s)	515
Cfr9I	CCCGGG	1 cut(s)	48
Csp6I	GTAC	3 cut(s)	4, 382, 430
CviAII	CATG	5 cut(s)	31, 232, 433, 592, 629
CviQI	GTAC	3 cut(s)	4, 382, 430
DdeI	CTNAG	1 cut(s)	225
DpnI	GATC	3 cut(s)	35, 41, 678
DpnII	GATC	3 cut(s)	33, 39, 676
DrdI	GACNNNNNNGTC	1 cut(s)	530
DseDI	GACNNNNNNGTC	1 cut(s)	530
EaeI	YGGCCR	1 cut(s)	588
EciI	GGCGGA	2 cut(s)	68, 71
Eco105I	TACGTA	1 cut(s)	301
Eco130I	CCWWGG	3 cut(s)	368, 498, 714
Eco47I	GGWCC	1 cut(s)	515
Eco88I	CYCGRG	4 cut(s)	48, 158, 335, 518
EcoT14I	CCWWGG	3 cut(s)	368, 498, 714
ErhI	CCWWGG	3 cut(s)	368, 498, 714
Esp3I	CGTCTC	1 cut(s)	638
FaeI	CATG	5 cut(s)	34, 235, 436, 595, 632
FaiI	YATR	9 cut(s)	32, 233, 387, 434, 593, 597, 630, 638, 660
FalI	AAGNNNNNCTT	2 cut(s)	122, 154
FaqI	GGGAC	1 cut(s)	501
FatI	CATG	5 cut(s)	30, 231, 432, 591, 628
Fnu4HI	GCNGC	5 cut(s)	70, 145, 164, 241, 341
FokI	GGATG	5 cut(s)	83, 107, 191, 314, 454
Fsp4HI	GCNGC	5 cut(s)	70, 145, 164, 241, 341
FspBI	CTAG	3 cut(s)	369, 408, 730
GluI	GCNGC	5 cut(s)	70, 145, 164, 241, 341
HaeIII	GGCC	1 cut(s)	590
HapII	CCGG	6 cut(s)	49, 331, 438, 587, 605, 641
Hin1II	CATG	5 cut(s)	34, 235, 436, 595, 632
HinfI	GANTC	1 cut(s)	415
HpaII	CCGG	6 cut(s)	49, 331, 438, 587, 605, 641
Hpy188I	TCNGA	2 cut(s)	490, 536
Hpy188III	TCNNGA	4 cut(s)	31, 37, 518, 667
Hpy99I	CGWCG	2 cut(s)	320, 323
HpyAV	CCTTC	1 cut(s)	301
HpyCH4III	ACNGT	1 cut(s)	649
HpyCH4IV	ACGT	3 cut(s)	126, 300, 321
HpyCH4V	TGCA	2 cut(s)	144, 222
HpyF10VI	GCNNNNNNNGC	1 cut(s)	340
HpyF3I	CTNAG	1 cut(s)	225
HpySE526I	ACGT	3 cut(s)	126, 300, 321
Hsp92II	CATG	5 cut(s)	34, 235, 436, 595, 632
KroI	GCCGGC	1 cut(s)	586
KroNI	GCCGGC	1 cut(s)	588
Kzo9I	GATC	3 cut(s)	33, 39, 676
LmnI	GCTCC	1 cut(s)	273
LpnPI	CCDG	8 cut(s)	62, 113, 344, 451, 556, 600, 618, 654
Lsp1109I	GCAGC	2 cut(s)	156, 175
LweI	GCATC	1 cut(s)	105
MaeI	CTAG	3 cut(s)	369, 408, 730
MaeII	ACGT	3 cut(s)	126, 300, 321
MaeIII	GTNAC	1 cut(s)	709
MalI	GATC	3 cut(s)	35, 41, 678
MboI	GATC	3 cut(s)	33, 39, 676
MboII	GAAGA	3 cut(s)	130, 559, 577
MflI	RGATCY	1 cut(s)	39
MhlI	GDGCHC	1 cut(s)	626
MluCI	AATT	2 cut(s)	20, 492
MmeI	TCCRAC	1 cut(s)	514
MroNI	GCCGGC	1 cut(s)	586
MroXI	GAANNNNTTC	1 cut(s)	189
MseI	TTAA	1 cut(s)	722
MspA1I	CMGCKG	1 cut(s)	240
MspI	CCGG	6 cut(s)	49, 331, 438, 587, 605, 641
MspR9I	CCNGG	4 cut(s)	49, 50, 439, 606
MwoI	GCNNNNNNNGC	1 cut(s)	340
NaeI	GCCGGC	1 cut(s)	588
NciI	CCSGG	4 cut(s)	49, 50, 439, 606
NdeII	GATC	3 cut(s)	33, 39, 676
NgoMIV	GCCGGC	1 cut(s)	586
NheI	GCTAGC	1 cut(s)	407
NlaIII	CATG	5 cut(s)	34, 235, 436, 595, 632
NlaIV	GGNNCC	2 cut(s)	41, 517
NspI	RCATGY	1 cut(s)	436
PaeR7I	CTCGAG	1 cut(s)	335
PagI	TCATGA	1 cut(s)	30
PciI	ACATGT	1 cut(s)	432
PcsI	WCGNNNNNNNCGW	1 cut(s)	132
PdiI	GCCGGC	1 cut(s)	588
PdmI	GAANNNNTTC	1 cut(s)	189
PfeI	GAWTC	1 cut(s)	415
PfoI	TCCNGGA	2 cut(s)	437, 604
PkrI	GCNGC	5 cut(s)	71, 146, 165, 242, 342
Ppu21I	YACGTR	1 cut(s)	301
PscI	ACATGT	1 cut(s)	432
PspN4I	GGNNCC	2 cut(s)	41, 517
PspPI	GGNCC	1 cut(s)	515
PspXI	VCTCGAGB	1 cut(s)	335
PstI	CTGCAG	1 cut(s)	146
PsuI	RGATCY	1 cut(s)	39
RsaI	GTAC	3 cut(s)	5, 383, 431
RsaNI	GTAC	3 cut(s)	4, 382, 430
SaqAI	TTAA	1 cut(s)	722
SatI	GCNGC	5 cut(s)	70, 145, 164, 241, 341
Sau3AI	GATC	3 cut(s)	33, 39, 676
Sau96I	GGNCC	1 cut(s)	515
ScrFI	CCNGG	4 cut(s)	49, 50, 439, 606
SduI	GDGCHC	1 cut(s)	626
SfaNI	GCATC	1 cut(s)	105
SfcI	CTRYAG	1 cut(s)	142
Sfr274I	CTCGAG	1 cut(s)	335
SinI	GGWCC	1 cut(s)	515
SlaI	CTCGAG	1 cut(s)	335
SmaI	CCCGGG	1 cut(s)	50
SmlI	CTYRAG	3 cut(s)	335, 356, 665
SmoI	CTYRAG	3 cut(s)	335, 356, 665
SnaBI	TACGTA	1 cut(s)	301
Sse9I	AATT	2 cut(s)	20, 492
SsiI	CCGC	6 cut(s)	53, 67, 70, 82, 240, 341
SspI	AATATT	1 cut(s)	701
SspMI	CTAG	3 cut(s)	369, 408, 730
StyD4I	CCNGG	4 cut(s)	47, 48, 437, 604
StyI	CCWWGG	3 cut(s)	368, 498, 714
TaaI	ACNGT	1 cut(s)	649
TaiI	ACGT	3 cut(s)	129, 303, 324
TaqI	TCGA	3 cut(s)	183, 286, 336
TasI	AATT	2 cut(s)	20, 492
TatI	WGTACW	2 cut(s)	381, 429
TauI	GCSGC	3 cut(s)	72, 243, 343
TfiI	GAWTC	1 cut(s)	415
Tru1I	TTAA	1 cut(s)	722
Tru9I	TTAA	1 cut(s)	722
TscAI	CASTG	3 cut(s)	229, 369, 686
TseI	GCWGC	2 cut(s)	144, 163
TspDTI	ATGAA	4 cut(s)	248, 316, 320, 647
TspMI	CCCGGG	1 cut(s)	48
TspRI	CASTG	3 cut(s)	229, 369, 686
VpaK11BI	GGWCC	1 cut(s)	515
XapI	RAATTY	1 cut(s)	492
XceI	RCATGY	1 cut(s)	436
XhoI	CTCGAG	1 cut(s)	335
XmaI	CCCGGG	1 cut(s)	48
XmaJI	CCTAGG	1 cut(s)	368
XmnI	GAANNNNTTC	1 cut(s)	189
XspI	CTAG	3 cut(s)	369, 408, 730

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.