Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0017707

Physical Location & Seq

Genomic Coordinates Forward (+)

39629399 .. 39630100

Gene Structure 702 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG208800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 702 bp

ATGATCGGGATCCTAACCCGGGCCGACAACTACGACCGCCGCCACTTCCTCCGCCTCATCTACGGCATCCAGTCATCTCCTCTCGCCACCATCCACGTCAAGTTCGTCTTCTGCAGCCTCACAAAACCCGAGCAGCGTGTCCTAATCGCCCTCGAAATGCTTCGTTTTGATGACATCCTCATTCTCAACTGTACTGAGAACATGAACAGCGGCAAAACCTACACCTACTTCTCCTCGCTCCCCCAACTCCTCCCTCGAAAATACGACTACGTAATGAAGGCAGACGACGACGTTTTCATCCGGCTCGAGCCGCTTGCCTTGTCGCTCAAGGCACTGCCTAGGGTGGATTTGTACTATGGATTTGTTATCCCTTGTGCTAGCATGAATCCCTTTGTGGAGTACATGTCCGGGATGGGGTTTTTGTTGTCGTGGGATTTGGTGGAGTGGATTGGAAGCTCTGAAATTCCCAAGGAGAGTCTGTTTGGTCCCGAGGACAAGTTGGTCGGAAAATGGTTGAAGATGGGAAACAAGGCGAAGAACAGGTTTAGTAATAAGCCGGCCATGTATGATTATCCGGGAACAAATGGGAGGTGCTCGCATGAGCTTATACCGGAGACGGTGGCTGTTCATAGGCTCAAGAGGTGGGATCAGTGGTTGCGTGTGCTTGAATATTTCAATGTAACCAAGGGATTAAATCTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006029 GO:0006464 GO:0006486 GO:0006493 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008378 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009653 GO:0009791 GO:0009888 GO:0009987 GO:0010015 GO:0010053 GO:0010054 GO:0010154 GO:0010191 GO:0010192 GO:0010214 GO:0010384 GO:0010404 GO:0010405 GO:0012505 GO:0016740 GO:0016757 GO:0016758 GO:0018193 GO:0018208 GO:0018258 GO:0019538 GO:0021700 GO:0022414 GO:0022622 GO:0030154 GO:0032501 GO:0032502 GO:0034645 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043413 GO:0044036 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048316 GO:0048354 GO:0048359 GO:0048364 GO:0048468 GO:0048469 GO:0048608 GO:0048731 GO:0048764 GO:0048765 GO:0048856 GO:0048869 GO:0061458 GO:0070085 GO:0071554 GO:0071695 GO:0071704 GO:0080147 GO:0090558 GO:0090627 GO:0099402 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1905392 GO:1990714

KEGG Pathways

Metabolic & Signaling

ko00532 ko00534 ko01100 map00532 map00534 map01100

Pfam Domains

Protein Families

Galactosyl_T

Protein Analysis

233

Amino Acids

27.04

Weight (kDa)

8.78

Isoelectric Point (pI)

44.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Galactosyl_T	PF01762	13 - 173	1e-06	Galactosyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0017707)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g10190 FvH4_7g10191
prunus_persica	Prupe.2G131800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0347911
rosa_laevigata	RLG00000028704
rosa_multiflora	Rmu_ssc0000342.1_g000012
rosa_roxburghii	Rroxscaffold_4G00307380
rosa_rugosa	Rorug01G0190400
rosa_samantha	Rh1AG208800 Rh1BG173400 Rh1DG203400
rosa_wichuraiana	Rw1G017350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	500
AciI	CCGC	5 cut(s)	37, 40, 52, 210, 311
AclWI	GGATC	3 cut(s)	4, 17, 654
AcoI	YGGCCR	1 cut(s)	558
AcsI	RAATTY	1 cut(s)	462
AfaI	GTAC	3 cut(s)	193, 353, 401
AfiI	CCNNNNNNNGG	2 cut(s)	19, 414
AflIII	ACRYGT	1 cut(s)	402
AgsI	TTSAA	3 cut(s)	517, 668, 676
AjiI	CACGTC	1 cut(s)	97
AluBI	AGCT	2 cut(s)	456, 604
AluI	AGCT	2 cut(s)	456, 604
Alw21I	GWGCWC	1 cut(s)	596
Alw26I	GTCTC	1 cut(s)	608
AlwI	GGATC	3 cut(s)	4, 17, 654
Ama87I	CYCGRG	4 cut(s)	18, 128, 305, 488
AoxI	GGCC	2 cut(s)	21, 558
ApeKI	GCWGC	2 cut(s)	114, 133
ApoI	RAATTY	1 cut(s)	462
Asp700I	GAANNNNTTC	1 cut(s)	159
AspA2I	CCTAGG	1 cut(s)	338
AspS9I	GGNCC	2 cut(s)	21, 485
AsuC2I	CCSGG	4 cut(s)	19, 20, 409, 576
AsuNHI	GCTAGC	1 cut(s)	377
AvaI	CYCGRG	4 cut(s)	18, 128, 305, 488
AvaII	GGWCC	1 cut(s)	485
AvrII	CCTAGG	1 cut(s)	338
BamHI	GGATCC	1 cut(s)	9
BbsI	GAAGAC	1 cut(s)	100
Bbv12I	GWGCWC	1 cut(s)	596
BbvI	GCAGC	2 cut(s)	126, 145
BccI	CCATC	3 cut(s)	98, 406, 514
BceAI	ACGGC	1 cut(s)	79
BcgI	CGANNNNNNTGC	2 cut(s)	296, 330
BcnI	CCSGG	4 cut(s)	19, 20, 409, 576
BcoDI	GTCTC	1 cut(s)	608
BfaI	CTAG	3 cut(s)	339, 378, 700
BfmI	CTRYAG	1 cut(s)	112
BisI	GCNGC	5 cut(s)	40, 115, 134, 211, 311
BlnI	CCTAGG	1 cut(s)	338
BlsI	GCNGC	5 cut(s)	41, 116, 135, 212, 312
Bme1390I	CCNGG	4 cut(s)	19, 20, 409, 576
Bme18I	GGWCC	1 cut(s)	485
BmeT110I	CYCGRG	4 cut(s)	18, 128, 305, 488
BmgBI	CACGTC	1 cut(s)	97
BmgT120I	GGNCC	2 cut(s)	21, 485
BmiI	GGNNCC	2 cut(s)	11, 487
BmrFI	CCNGG	4 cut(s)	19, 20, 409, 576
BmsI	GCATC	1 cut(s)	75
BmtI	GCTAGC	1 cut(s)	381
BpiI	GAAGAC	1 cut(s)	100
BpuEI	CTTGAG	2 cut(s)	311, 620
BpuMI	CCSGG	4 cut(s)	19, 20, 409, 576
BsaAI	YACGTR	1 cut(s)	271
BsaBI	GATNNNNATC	1 cut(s)	8
BsaJI	CCNNGG	5 cut(s)	18, 338, 468, 489, 684
BsaWI	WCCGGW	1 cut(s)	610
BsaXI	ACNNNNNCTCC	4 cut(s)	389, 419, 464, 494
Bsc4I	CCNNNNNNNGG	2 cut(s)	19, 414
Bse118I	RCCGGY	1 cut(s)	556
Bse1I	ACTGG	1 cut(s)	70
Bse8I	GATNNNNATC	1 cut(s)	8
BseDI	CCNNGG	5 cut(s)	18, 338, 468, 489, 684
BseGI	GGATG	5 cut(s)	66, 90, 174, 297, 417
BseJI	GATNNNNATC	1 cut(s)	8
BseLI	CCNNNNNNNGG	2 cut(s)	19, 414
BseMII	CTCAG	1 cut(s)	186
BseNI	ACTGG	1 cut(s)	70
BseRI	GAGGAG	3 cut(s)	69, 223, 239
BseXI	GCAGC	2 cut(s)	126, 145
Bsh1285I	CGRYCG	1 cut(s)	37
BshFI	GGCC	2 cut(s)	23, 560
BsiEI	CGRYCG	1 cut(s)	37
BsiHKAI	GWGCWC	1 cut(s)	596
BsiHKCI	CYCGRG	4 cut(s)	18, 128, 305, 488
BsiSI	CCGG	6 cut(s)	19, 301, 408, 557, 575, 611
BslFI	GGGAC	1 cut(s)	471
BslI	CCNNNNNNNGG	2 cut(s)	19, 414
BsmAI	GTCTC	1 cut(s)	608
BsmBI	CGTCTC	1 cut(s)	608
BsmFI	GGGAC	1 cut(s)	471
BsnI	GGCC	2 cut(s)	23, 560
BsoBI	CYCGRG	4 cut(s)	18, 128, 305, 488
Bsp1286I	GDGCHC	1 cut(s)	596
Bsp143I	GATC	3 cut(s)	3, 9, 646
BspACI	CCGC	5 cut(s)	37, 40, 52, 210, 311
BspANI	GGCC	2 cut(s)	23, 560
BspCNI	CTCAG	1 cut(s)	187
BspLI	GGNNCC	2 cut(s)	11, 487
BspMAI	CTGCAG	1 cut(s)	116
BspOI	GCTAGC	1 cut(s)	381
BspPI	GGATC	3 cut(s)	4, 17, 654
BsrFI	RCCGGY	1 cut(s)	556
BsrI	ACTGG	1 cut(s)	70
BssAI	RCCGGY	1 cut(s)	556
BssECI	CCNNGG	5 cut(s)	18, 338, 468, 489, 684
BssMI	GATC	3 cut(s)	3, 9, 646
BssT1I	CCWWGG	3 cut(s)	338, 468, 684
Bst4CI	ACNGT	2 cut(s)	191, 619
BstBAI	YACGTR	1 cut(s)	271
BstC8I	GCNNGC	4 cut(s)	315, 379, 558, 596
BstDEI	CTNAG	1 cut(s)	195
BstF5I	GGATG	5 cut(s)	66, 90, 174, 297, 417
BstKTI	GATC	3 cut(s)	6, 12, 649
BstMAI	GTCTC	1 cut(s)	608
BstMBI	GATC	3 cut(s)	3, 9, 646
BstMCI	CGRYCG	1 cut(s)	37
BstMWI	GCNNNNNNNGC	1 cut(s)	310
BstNSI	RCATGY	1 cut(s)	406
BstSCI	CCNGG	4 cut(s)	17, 18, 407, 574
BstSFI	CTRYAG	1 cut(s)	112
BstSNI	TACGTA	1 cut(s)	271
BstV1I	GCAGC	2 cut(s)	126, 145
BstV2I	GAAGAC	1 cut(s)	100
BstX2I	RGATCY	1 cut(s)	9
BstYI	RGATCY	1 cut(s)	9
BsuRI	GGCC	2 cut(s)	23, 560
BtrI	CACGTC	1 cut(s)	97
BtsCI	GGATG	5 cut(s)	66, 90, 174, 297, 417
BtsI	GCAGTG	1 cut(s)	332
BtsIMutI	CAGTG	2 cut(s)	332, 656
Cac8I	GCNNGC	4 cut(s)	315, 379, 558, 596
Cfr10I	RCCGGY	1 cut(s)	556
Cfr13I	GGNCC	2 cut(s)	21, 485
Cfr9I	CCCGGG	1 cut(s)	18
Csp6I	GTAC	3 cut(s)	192, 352, 400
CviAII	CATG	5 cut(s)	202, 382, 403, 562, 599
CviQI	GTAC	3 cut(s)	192, 352, 400
DdeI	CTNAG	1 cut(s)	195
DpnI	GATC	3 cut(s)	5, 11, 648
DpnII	GATC	3 cut(s)	3, 9, 646
DrdI	GACNNNNNNGTC	1 cut(s)	500
DseDI	GACNNNNNNGTC	1 cut(s)	500
EaeI	YGGCCR	1 cut(s)	558
EciI	GGCGGA	1 cut(s)	41
Eco105I	TACGTA	1 cut(s)	271
Eco130I	CCWWGG	3 cut(s)	338, 468, 684
Eco47I	GGWCC	1 cut(s)	485
Eco88I	CYCGRG	4 cut(s)	18, 128, 305, 488
EcoT14I	CCWWGG	3 cut(s)	338, 468, 684
ErhI	CCWWGG	3 cut(s)	338, 468, 684
Esp3I	CGTCTC	1 cut(s)	608
FaeI	CATG	5 cut(s)	205, 385, 406, 565, 602
FaiI	YATR	9 cut(s)	203, 357, 383, 404, 563, 567, 600, 608, 630
FalI	AAGNNNNNCTT	2 cut(s)	92, 124
FaqI	GGGAC	1 cut(s)	471
FatI	CATG	5 cut(s)	201, 381, 402, 561, 598
Fnu4HI	GCNGC	5 cut(s)	40, 115, 134, 211, 311
FokI	GGATG	5 cut(s)	53, 77, 161, 284, 424
Fsp4HI	GCNGC	5 cut(s)	40, 115, 134, 211, 311
FspBI	CTAG	3 cut(s)	339, 378, 700
GluI	GCNGC	5 cut(s)	40, 115, 134, 211, 311
HaeIII	GGCC	2 cut(s)	23, 560
HapII	CCGG	6 cut(s)	19, 301, 408, 557, 575, 611
Hin1II	CATG	5 cut(s)	205, 385, 406, 565, 602
HinfI	GANTC	2 cut(s)	385, 475
HpaII	CCGG	6 cut(s)	19, 301, 408, 557, 575, 611
Hpy188I	TCNGA	2 cut(s)	460, 506
Hpy188III	TCNNGA	3 cut(s)	7, 488, 637
Hpy99I	CGWCG	2 cut(s)	290, 293
HpyAV	CCTTC	1 cut(s)	271
HpyCH4III	ACNGT	2 cut(s)	191, 619
HpyCH4IV	ACGT	3 cut(s)	96, 270, 291
HpyCH4V	TGCA	1 cut(s)	114
HpyF10VI	GCNNNNNNNGC	1 cut(s)	310
HpyF3I	CTNAG	1 cut(s)	195
HpySE526I	ACGT	3 cut(s)	96, 270, 291
Hsp92II	CATG	5 cut(s)	205, 385, 406, 565, 602
KroI	GCCGGC	1 cut(s)	556
KroNI	GCCGGC	1 cut(s)	558
Kzo9I	GATC	3 cut(s)	3, 9, 646
LmnI	GCTCC	1 cut(s)	243
LpnPI	CCDG	8 cut(s)	32, 83, 314, 421, 526, 570, 588, 624
Lsp1109I	GCAGC	2 cut(s)	126, 145
LweI	GCATC	1 cut(s)	75
MaeI	CTAG	3 cut(s)	339, 378, 700
MaeII	ACGT	3 cut(s)	96, 270, 291
MaeIII	GTNAC	1 cut(s)	679
MalI	GATC	3 cut(s)	5, 11, 648
MboI	GATC	3 cut(s)	3, 9, 646
MboII	GAAGA	3 cut(s)	100, 529, 547
MflI	RGATCY	1 cut(s)	9
MhlI	GDGCHC	1 cut(s)	596
MluCI	AATT	1 cut(s)	462
MlyI	GAGTC	1 cut(s)	484
MmeI	TCCRAC	1 cut(s)	484
MroNI	GCCGGC	1 cut(s)	556
MroXI	GAANNNNTTC	1 cut(s)	159
MseI	TTAA	1 cut(s)	692
MspA1I	CMGCKG	1 cut(s)	210
MspI	CCGG	6 cut(s)	19, 301, 408, 557, 575, 611
MspR9I	CCNGG	4 cut(s)	19, 20, 409, 576
MwoI	GCNNNNNNNGC	1 cut(s)	310
NaeI	GCCGGC	1 cut(s)	558
NciI	CCSGG	4 cut(s)	19, 20, 409, 576
NdeII	GATC	3 cut(s)	3, 9, 646
NgoMIV	GCCGGC	1 cut(s)	556
NheI	GCTAGC	1 cut(s)	377
NlaIII	CATG	5 cut(s)	205, 385, 406, 565, 602
NlaIV	GGNNCC	2 cut(s)	11, 487
NspI	RCATGY	1 cut(s)	406
PaeR7I	CTCGAG	1 cut(s)	305
PciI	ACATGT	1 cut(s)	402
PcsI	WCGNNNNNNNCGW	1 cut(s)	102
PdiI	GCCGGC	1 cut(s)	558
PdmI	GAANNNNTTC	1 cut(s)	159
PfeI	GAWTC	1 cut(s)	385
PfoI	TCCNGGA	2 cut(s)	407, 574
PkrI	GCNGC	5 cut(s)	41, 116, 135, 212, 312
PleI	GAGTC	1 cut(s)	483
PpsI	GAGTC	1 cut(s)	483
Ppu21I	YACGTR	1 cut(s)	271
PscI	ACATGT	1 cut(s)	402
PspN4I	GGNNCC	2 cut(s)	11, 487
PspPI	GGNCC	2 cut(s)	21, 485
PspXI	VCTCGAGB	1 cut(s)	305
PstI	CTGCAG	1 cut(s)	116
PsuI	RGATCY	1 cut(s)	9
RsaI	GTAC	3 cut(s)	193, 353, 401
RsaNI	GTAC	3 cut(s)	192, 352, 400
SaqAI	TTAA	1 cut(s)	692
SatI	GCNGC	5 cut(s)	40, 115, 134, 211, 311
Sau3AI	GATC	3 cut(s)	3, 9, 646
Sau96I	GGNCC	2 cut(s)	21, 485
SchI	GAGTC	1 cut(s)	484
ScrFI	CCNGG	4 cut(s)	19, 20, 409, 576
SduI	GDGCHC	1 cut(s)	596
SfaNI	GCATC	1 cut(s)	75
SfcI	CTRYAG	1 cut(s)	112
Sfr274I	CTCGAG	1 cut(s)	305
SinI	GGWCC	1 cut(s)	485
SlaI	CTCGAG	1 cut(s)	305
SmaI	CCCGGG	1 cut(s)	20
SmlI	CTYRAG	3 cut(s)	305, 326, 635
SmoI	CTYRAG	3 cut(s)	305, 326, 635
SnaBI	TACGTA	1 cut(s)	271
Sse9I	AATT	1 cut(s)	462
SsiI	CCGC	5 cut(s)	37, 40, 52, 210, 311
SspI	AATATT	1 cut(s)	671
SspMI	CTAG	3 cut(s)	339, 378, 700
StyD4I	CCNGG	4 cut(s)	17, 18, 407, 574
StyI	CCWWGG	3 cut(s)	338, 468, 684
TaaI	ACNGT	2 cut(s)	191, 619
TaiI	ACGT	3 cut(s)	99, 273, 294
TaqI	TCGA	3 cut(s)	153, 256, 306
TasI	AATT	1 cut(s)	462
TatI	WGTACW	3 cut(s)	191, 351, 399
TauI	GCSGC	3 cut(s)	42, 213, 313
TfiI	GAWTC	1 cut(s)	385
Tru1I	TTAA	1 cut(s)	692
Tru9I	TTAA	1 cut(s)	692
TscAI	CASTG	2 cut(s)	339, 656
TseI	GCWGC	2 cut(s)	114, 133
TspDTI	ATGAA	5 cut(s)	218, 286, 290, 398, 617
TspMI	CCCGGG	1 cut(s)	18
TspRI	CASTG	2 cut(s)	339, 656
VpaK11BI	GGWCC	1 cut(s)	485
XapI	RAATTY	1 cut(s)	462
XceI	RCATGY	1 cut(s)	406
XhoI	CTCGAG	1 cut(s)	305
XmaI	CCCGGG	1 cut(s)	18
XmaJI	CCTAGG	1 cut(s)	338
XmnI	GAANNNNTTC	1 cut(s)	159
XspI	CTAG	3 cut(s)	339, 378, 700

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.