Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0017707

Physical Location & Seq

Genomic Coordinates Forward (+)

40621994 .. 40622860

Gene Structure 867 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ57400

Sequence Viewer

CDS Protein Promoter (2k)

Length: 867 bp

ATGAAGAGGAACAGATGGATAGTCCTAGTTACATTACCCTCCCTCATTCTACCCCTCTTGCTATTCATCATCTTCTTCAATGTCCAGTACTTTCTAAAGCCTCCACCACCAAATCCTTCCTCCAAATTATCCACCATGTACCCTAATCAAACCCAATTCAGCCTCATGATCGGGATCCTAACCCGGGCCGACAACTACGACCGCCGCCACTTCCTCCGCCTCATCTACGGCATCCAGTCATCTCCTCTCGCCACCATCCACGTCAAGTTCGTCTTCTGCAGCCTCACAAAACCCGAGCAGCGTGTCCTAATCGCCCTCGAAATGCTTCGTTTTGATGACATCCTCATTCTCAACTGCACTGAGAACATGAACAGCGGCAAAACCTACACGTACTTCTCCTCGCTCGCCCAACTCCTCCCTCGAAAATACGACTACGTAATGAAGGCAGACGACGACGTTTTCATCCGGCTCGAGCCGCTTGCCTTGTCGCTCAAGGCACTGCCTAGGGTGGATTTGTACTATGGATTTGTTATCCCTTGTGCTAGCATGAATCCCTTTGTGGAGTACATGTCCGGGATGGGGTTTTTGTTGTCGTGGGATTTGGTGGAGTGGATTGGAAGCTCTGAAATTCCCAAGGAGAGTGTGTTTGGTCCCGAGGACAAGTTGGTCGGAAAATGGTTGAAGATGGGAAACAAGGCGAAGAACAGGTTCAGTAATAAGCCGGCCATGTATGATTATCCGGGAACAAATGGGAGGTGCTCGCATGAGCTTATACCGGAGACGGTGGCTGTTCATAGGCTCAAGAGGTGGGATCAGTGGTTGCGTGTGCTTGAATATTTCAATGTAACCAAGGGATTAAATCTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006029 GO:0006464 GO:0006486 GO:0006493 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008378 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009653 GO:0009791 GO:0009888 GO:0009987 GO:0010015 GO:0010053 GO:0010054 GO:0010154 GO:0010191 GO:0010192 GO:0010214 GO:0010384 GO:0010404 GO:0010405 GO:0012505 GO:0016740 GO:0016757 GO:0016758 GO:0018193 GO:0018208 GO:0018258 GO:0019538 GO:0021700 GO:0022414 GO:0022622 GO:0030154 GO:0032501 GO:0032502 GO:0034645 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043413 GO:0044036 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048316 GO:0048354 GO:0048359 GO:0048364 GO:0048468 GO:0048469 GO:0048608 GO:0048731 GO:0048764 GO:0048765 GO:0048856 GO:0048869 GO:0061458 GO:0070085 GO:0071554 GO:0071695 GO:0071704 GO:0080147 GO:0090558 GO:0090627 GO:0099402 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1905392 GO:1990714

KEGG Pathways

Metabolic & Signaling

ko00532 ko00534 ko01100 map00532 map00534 map01100

Pfam Domains

Protein Families

Galactosyl_T

Protein Analysis

288

Amino Acids

33.44

Weight (kDa)

9.3

Isoelectric Point (pI)

44.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017707)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g10190 FvH4_7g10191
prunus_persica	Prupe.2G131800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0347911
rosa_laevigata	RLG00000028704
rosa_multiflora	Rmu_ssc0000342.1_g000012
rosa_roxburghii	Rroxscaffold_4G00307380
rosa_rugosa	Rorug01G0190400
rosa_samantha	Rh1AG208800 Rh1BG173400 Rh1DG203400
rosa_wichuraiana	Rw1G017350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	665
AciI	CCGC	5 cut(s)	202, 205, 217, 375, 476
AclWI	GGATC	3 cut(s)	169, 182, 819
AcoI	YGGCCR	1 cut(s)	723
AcsI	RAATTY	1 cut(s)	627
AfaI	GTAC	5 cut(s)	89, 140, 392, 518, 566
AfiI	CCNNNNNNNGG	2 cut(s)	184, 579
AflIII	ACRYGT	2 cut(s)	387, 567
AgsI	TTSAA	4 cut(s)	79, 682, 833, 841
AjiI	CACGTC	1 cut(s)	262
AluBI	AGCT	2 cut(s)	621, 769
AluI	AGCT	2 cut(s)	621, 769
Alw21I	GWGCWC	1 cut(s)	761
Alw26I	GTCTC	1 cut(s)	773
AlwI	GGATC	3 cut(s)	169, 182, 819
Ama87I	CYCGRG	4 cut(s)	183, 293, 470, 653
AoxI	GGCC	2 cut(s)	186, 723
ApeKI	GCWGC	2 cut(s)	279, 298
ApoI	RAATTY	1 cut(s)	627
Asp700I	GAANNNNTTC	2 cut(s)	324, 707
AspA2I	CCTAGG	1 cut(s)	503
AspS9I	GGNCC	2 cut(s)	186, 650
AsuC2I	CCSGG	4 cut(s)	184, 185, 574, 741
AsuNHI	GCTAGC	1 cut(s)	542
AvaI	CYCGRG	4 cut(s)	183, 293, 470, 653
AvaII	GGWCC	1 cut(s)	650
AvrII	CCTAGG	1 cut(s)	503
BamHI	GGATCC	1 cut(s)	174
BbsI	GAAGAC	1 cut(s)	265
Bbv12I	GWGCWC	1 cut(s)	761
BbvI	GCAGC	2 cut(s)	291, 310
BccI	CCATC	4 cut(s)	9, 263, 571, 679
BceAI	ACGGC	1 cut(s)	244
BcgI	CGANNNNNNTGC	2 cut(s)	461, 495
BcnI	CCSGG	4 cut(s)	184, 185, 574, 741
BcoDI	GTCTC	1 cut(s)	773
BfaI	CTAG	4 cut(s)	26, 504, 543, 865
BfmI	CTRYAG	1 cut(s)	277
BisI	GCNGC	5 cut(s)	205, 280, 299, 376, 476
BlnI	CCTAGG	1 cut(s)	503
BlsI	GCNGC	5 cut(s)	206, 281, 300, 377, 477
BmcAI	AGTACT	1 cut(s)	89
Bme1390I	CCNGG	4 cut(s)	184, 185, 574, 741
Bme18I	GGWCC	1 cut(s)	650
BmeT110I	CYCGRG	4 cut(s)	183, 293, 470, 653
BmgBI	CACGTC	1 cut(s)	262
BmgT120I	GGNCC	2 cut(s)	186, 650
BmiI	GGNNCC	2 cut(s)	176, 652
BmrFI	CCNGG	4 cut(s)	184, 185, 574, 741
BmsI	GCATC	1 cut(s)	240
BmtI	GCTAGC	1 cut(s)	546
BpiI	GAAGAC	1 cut(s)	265
BpuEI	CTTGAG	2 cut(s)	476, 785
BpuMI	CCSGG	4 cut(s)	184, 185, 574, 741
BsaAI	YACGTR	2 cut(s)	390, 436
BsaBI	GATNNNNATC	1 cut(s)	173
BsaJI	CCNNGG	5 cut(s)	183, 503, 633, 654, 849
BsaWI	WCCGGW	1 cut(s)	775
BsaXI	ACNNNNNCTCC	4 cut(s)	554, 584, 629, 659
Bsc4I	CCNNNNNNNGG	2 cut(s)	184, 579
Bse118I	RCCGGY	1 cut(s)	721
Bse1I	ACTGG	2 cut(s)	85, 235
Bse8I	GATNNNNATC	1 cut(s)	173
BseDI	CCNNGG	5 cut(s)	183, 503, 633, 654, 849
BseGI	GGATG	5 cut(s)	231, 255, 339, 462, 582
BseJI	GATNNNNATC	1 cut(s)	173
BseLI	CCNNNNNNNGG	2 cut(s)	184, 579
BseMII	CTCAG	1 cut(s)	351
BseNI	ACTGG	2 cut(s)	85, 235
BseRI	GAGGAG	3 cut(s)	234, 388, 404
BseXI	GCAGC	2 cut(s)	291, 310
BsgI	GTGCAG	1 cut(s)	340
Bsh1285I	CGRYCG	1 cut(s)	202
BshFI	GGCC	2 cut(s)	188, 725
BsiEI	CGRYCG	1 cut(s)	202
BsiHKAI	GWGCWC	1 cut(s)	761
BsiHKCI	CYCGRG	4 cut(s)	183, 293, 470, 653
BsiSI	CCGG	6 cut(s)	184, 466, 573, 722, 740, 776
BslFI	GGGAC	1 cut(s)	636
BslI	CCNNNNNNNGG	2 cut(s)	184, 579
BsmAI	GTCTC	1 cut(s)	773
BsmBI	CGTCTC	1 cut(s)	773
BsmFI	GGGAC	1 cut(s)	636
BsnI	GGCC	2 cut(s)	188, 725
BsoBI	CYCGRG	4 cut(s)	183, 293, 470, 653
Bsp1286I	GDGCHC	1 cut(s)	761
Bsp143I	GATC	3 cut(s)	168, 174, 811
BspACI	CCGC	5 cut(s)	202, 205, 217, 375, 476
BspANI	GGCC	2 cut(s)	188, 725
BspCNI	CTCAG	1 cut(s)	352
BspHI	TCATGA	1 cut(s)	165
BspLI	GGNNCC	2 cut(s)	176, 652
BspMAI	CTGCAG	1 cut(s)	281
BspOI	GCTAGC	1 cut(s)	546
BspPI	GGATC	3 cut(s)	169, 182, 819
BsrFI	RCCGGY	1 cut(s)	721
BsrI	ACTGG	2 cut(s)	85, 235
BssAI	RCCGGY	1 cut(s)	721
BssECI	CCNNGG	5 cut(s)	183, 503, 633, 654, 849
BssMI	GATC	3 cut(s)	168, 174, 811
BssT1I	CCWWGG	3 cut(s)	503, 633, 849
Bst4CI	ACNGT	1 cut(s)	784
BstBAI	YACGTR	2 cut(s)	390, 436
BstC8I	GCNNGC	5 cut(s)	405, 480, 544, 723, 761
BstDEI	CTNAG	1 cut(s)	360
BstF5I	GGATG	5 cut(s)	231, 255, 339, 462, 582
BstKTI	GATC	3 cut(s)	171, 177, 814
BstMAI	GTCTC	1 cut(s)	773
BstMBI	GATC	3 cut(s)	168, 174, 811
BstMCI	CGRYCG	1 cut(s)	202
BstMWI	GCNNNNNNNGC	1 cut(s)	475
BstNSI	RCATGY	1 cut(s)	571
BstSCI	CCNGG	4 cut(s)	182, 183, 572, 739
BstSFI	CTRYAG	1 cut(s)	277
BstSNI	TACGTA	1 cut(s)	436
BstV1I	GCAGC	2 cut(s)	291, 310
BstV2I	GAAGAC	1 cut(s)	265
BstX2I	RGATCY	1 cut(s)	174
BstYI	RGATCY	1 cut(s)	174
BsuRI	GGCC	2 cut(s)	188, 725
BtrI	CACGTC	1 cut(s)	262
BtsCI	GGATG	5 cut(s)	231, 255, 339, 462, 582
BtsI	GCAGTG	1 cut(s)	497
BtsIMutI	CAGTG	3 cut(s)	357, 497, 821
Cac8I	GCNNGC	5 cut(s)	405, 480, 544, 723, 761
CciI	TCATGA	1 cut(s)	165
Cfr10I	RCCGGY	1 cut(s)	721
Cfr13I	GGNCC	2 cut(s)	186, 650
Cfr9I	CCCGGG	1 cut(s)	183
Csp6I	GTAC	5 cut(s)	88, 139, 391, 517, 565
CviAII	CATG	7 cut(s)	136, 166, 367, 547, 568, 727, 764
CviQI	GTAC	5 cut(s)	88, 139, 391, 517, 565
DdeI	CTNAG	1 cut(s)	360
DpnI	GATC	3 cut(s)	170, 176, 813
DpnII	GATC	3 cut(s)	168, 174, 811
DrdI	GACNNNNNNGTC	1 cut(s)	665
DseDI	GACNNNNNNGTC	1 cut(s)	665
EaeI	YGGCCR	1 cut(s)	723
EciI	GGCGGA	1 cut(s)	206
Eco105I	TACGTA	1 cut(s)	436
Eco130I	CCWWGG	3 cut(s)	503, 633, 849
Eco47I	GGWCC	1 cut(s)	650
Eco88I	CYCGRG	4 cut(s)	183, 293, 470, 653
EcoT14I	CCWWGG	3 cut(s)	503, 633, 849
ErhI	CCWWGG	3 cut(s)	503, 633, 849
Esp3I	CGTCTC	1 cut(s)	773
FaeI	CATG	7 cut(s)	139, 169, 370, 550, 571, 730, 767
FalI	AAGNNNNNCTT	2 cut(s)	257, 289
FaqI	GGGAC	1 cut(s)	636
FatI	CATG	7 cut(s)	135, 165, 366, 546, 567, 726, 763
Fnu4HI	GCNGC	5 cut(s)	205, 280, 299, 376, 476
FokI	GGATG	5 cut(s)	218, 242, 326, 449, 589
Fsp4HI	GCNGC	5 cut(s)	205, 280, 299, 376, 476
FspBI	CTAG	4 cut(s)	26, 504, 543, 865
GluI	GCNGC	5 cut(s)	205, 280, 299, 376, 476
HaeIII	GGCC	2 cut(s)	188, 725
HapII	CCGG	6 cut(s)	184, 466, 573, 722, 740, 776
Hin1II	CATG	7 cut(s)	139, 169, 370, 550, 571, 730, 767
HinfI	GANTC	1 cut(s)	550
HpaII	CCGG	6 cut(s)	184, 466, 573, 722, 740, 776
Hpy188I	TCNGA	2 cut(s)	625, 671
Hpy188III	TCNNGA	4 cut(s)	166, 172, 653, 802
Hpy99I	CGWCG	2 cut(s)	455, 458
HpyAV	CCTTC	2 cut(s)	126, 436
HpyCH4III	ACNGT	1 cut(s)	784
HpyCH4IV	ACGT	4 cut(s)	261, 389, 435, 456
HpyCH4V	TGCA	2 cut(s)	279, 357
HpyF10VI	GCNNNNNNNGC	1 cut(s)	475
HpyF3I	CTNAG	1 cut(s)	360
HpySE526I	ACGT	4 cut(s)	261, 389, 435, 456
Hsp92II	CATG	7 cut(s)	139, 169, 370, 550, 571, 730, 767
KroI	GCCGGC	1 cut(s)	721
KroNI	GCCGGC	1 cut(s)	723
Kzo9I	GATC	3 cut(s)	168, 174, 811
LpnPI	CCDG	9 cut(s)	98, 197, 248, 479, 586, 691, 735, 753, 789
Lsp1109I	GCAGC	2 cut(s)	291, 310
LweI	GCATC	1 cut(s)	240
MaeI	CTAG	4 cut(s)	26, 504, 543, 865
MaeII	ACGT	4 cut(s)	261, 389, 435, 456
MaeIII	GTNAC	2 cut(s)	28, 844
MalI	GATC	3 cut(s)	170, 176, 813
MboI	GATC	3 cut(s)	168, 174, 811
MboII	GAAGA	6 cut(s)	16, 64, 67, 265, 694, 712
MflI	RGATCY	1 cut(s)	174
MhlI	GDGCHC	1 cut(s)	761
MluCI	AATT	3 cut(s)	125, 155, 627
MmeI	TCCRAC	1 cut(s)	649
MroNI	GCCGGC	1 cut(s)	721
MroXI	GAANNNNTTC	2 cut(s)	324, 707
MseI	TTAA	1 cut(s)	857
MspA1I	CMGCKG	1 cut(s)	375
MspI	CCGG	6 cut(s)	184, 466, 573, 722, 740, 776
MspR9I	CCNGG	4 cut(s)	184, 185, 574, 741
MwoI	GCNNNNNNNGC	1 cut(s)	475
NaeI	GCCGGC	1 cut(s)	723
NciI	CCSGG	4 cut(s)	184, 185, 574, 741
NdeII	GATC	3 cut(s)	168, 174, 811
NgoMIV	GCCGGC	1 cut(s)	721
NheI	GCTAGC	1 cut(s)	542
NlaIII	CATG	7 cut(s)	139, 169, 370, 550, 571, 730, 767
NlaIV	GGNNCC	2 cut(s)	176, 652
NspI	RCATGY	1 cut(s)	571
PaeR7I	CTCGAG	1 cut(s)	470
PagI	TCATGA	1 cut(s)	165
PciI	ACATGT	1 cut(s)	567
PcsI	WCGNNNNNNNCGW	1 cut(s)	267
PdiI	GCCGGC	1 cut(s)	723
PdmI	GAANNNNTTC	2 cut(s)	324, 707
PfeI	GAWTC	1 cut(s)	550
PfoI	TCCNGGA	2 cut(s)	572, 739
PkrI	GCNGC	5 cut(s)	206, 281, 300, 377, 477
Ppu21I	YACGTR	2 cut(s)	390, 436
PscI	ACATGT	1 cut(s)	567
PspN4I	GGNNCC	2 cut(s)	176, 652
PspPI	GGNCC	2 cut(s)	186, 650
PspXI	VCTCGAGB	1 cut(s)	470
PstI	CTGCAG	1 cut(s)	281
PsuI	RGATCY	1 cut(s)	174
RsaI	GTAC	5 cut(s)	89, 140, 392, 518, 566
RsaNI	GTAC	5 cut(s)	88, 139, 391, 517, 565
SaqAI	TTAA	1 cut(s)	857
SatI	GCNGC	5 cut(s)	205, 280, 299, 376, 476
Sau3AI	GATC	3 cut(s)	168, 174, 811
Sau96I	GGNCC	2 cut(s)	186, 650
ScaI	AGTACT	1 cut(s)	89
ScrFI	CCNGG	4 cut(s)	184, 185, 574, 741
SduI	GDGCHC	1 cut(s)	761
SfaNI	GCATC	1 cut(s)	240
SfcI	CTRYAG	1 cut(s)	277
Sfr274I	CTCGAG	1 cut(s)	470
SinI	GGWCC	1 cut(s)	650
SlaI	CTCGAG	1 cut(s)	470
SmaI	CCCGGG	1 cut(s)	185
SmlI	CTYRAG	3 cut(s)	470, 491, 800
SmoI	CTYRAG	3 cut(s)	470, 491, 800
SnaBI	TACGTA	1 cut(s)	436
Sse9I	AATT	3 cut(s)	125, 155, 627
SsiI	CCGC	5 cut(s)	202, 205, 217, 375, 476
SspI	AATATT	1 cut(s)	836
SspMI	CTAG	4 cut(s)	26, 504, 543, 865
StyD4I	CCNGG	4 cut(s)	182, 183, 572, 739
StyI	CCWWGG	3 cut(s)	503, 633, 849
TaaI	ACNGT	1 cut(s)	784
TaiI	ACGT	4 cut(s)	264, 392, 438, 459
TaqI	TCGA	3 cut(s)	318, 421, 471
TasI	AATT	3 cut(s)	125, 155, 627
TatI	WGTACW	3 cut(s)	87, 516, 564
TauI	GCSGC	3 cut(s)	207, 378, 478
TfiI	GAWTC	1 cut(s)	550
Tru1I	TTAA	1 cut(s)	857
Tru9I	TTAA	1 cut(s)	857
TscAI	CASTG	3 cut(s)	364, 504, 821
TseI	GCWGC	2 cut(s)	279, 298
TspDTI	ATGAA	7 cut(s)	17, 55, 383, 451, 455, 563, 782
TspMI	CCCGGG	1 cut(s)	183
TspRI	CASTG	3 cut(s)	364, 504, 821
VpaK11BI	GGWCC	1 cut(s)	650
XapI	RAATTY	1 cut(s)	627
XceI	RCATGY	1 cut(s)	571
XhoI	CTCGAG	1 cut(s)	470
XmaI	CCCGGG	1 cut(s)	183
XmaJI	CCTAGG	1 cut(s)	503
XmnI	GAANNNNTTC	2 cut(s)	324, 707
XspI	CTAG	4 cut(s)	26, 504, 543, 865
ZrmI	AGTACT	1 cut(s)	89

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.