Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0017707

Physical Location & Seq

Genomic Coordinates Reverse (-)

26738560 .. 26739426

Gene Structure 867 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000028704

Sequence Viewer

CDS Protein Promoter (2k)

Length: 867 bp

ATGAAGAGGAACAAATGGATAGTCCTAGTTACATTACCCTCCCTCATTCTATCCCTCCTGCTATTCATGATCTTCTTCAATGTCCAGTACTTTCTAAAGCCTCCACCACCAAATCCTTCCTCCAAATTATCCACCATGTACCCTAAAAAAACCAAATTCAGCCTCATGATCGGGATCCTAACGCGGGCCGACAACTACGACCGCCGCCACTTCCTCCGCCTCATCTACGGCATCCAGTCATCTCCTCTCGCCACCATCCACGTCAAGTTCGTCTTCTGCAGCCTCACAAAACCCGAGCAGCGTGTCCTAATCGCCCTCGAAATGCTTCGTTTCGATGACATCCTCATTCTCAACTGCACTGAGAACATGAACAGCGGCAAAACCTACACCTACTTCTCCTCGCTCCCCCAACTCCTCCAGCGAAAATACGACTACGTAATGAAGGCAGACGACGACGTTTTCATCCGGCTCGAGCCACTTGCCTTGTCGCTCAAGGCACTGCCTAGGGTGGATTTTTATTATGGATTTGTTATCCCCTGTGCTAGCATGAATCCCTTTGTGGAGTACATGTCCGGGATGGGGTTTTTGTTGTCGTGGGATTTGGTGGAGTGGATTGGAAGCTCTGAAATTCCCAAGGAGAGTGTGTTTGGTCCCGAGGACAAGTTGGTCGGAAAATGGTTGAAGATGGGAAACAAGGCGAAGAACAGGTTTAGTAATAAGCCGGCCATGTATGATTATCCGGGAACAAACGGAAGGTGCTCGCATGAGCTGATACCGGAGACGGTGGCTGTTCATAGGCTTAAGAGGTGGGATCAGTGGTTGCGTGTGCTTGAATATTTCAATGTAACCAAGGGATTAAATCTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006029 GO:0006464 GO:0006486 GO:0006493 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008378 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009653 GO:0009791 GO:0009888 GO:0009987 GO:0010015 GO:0010053 GO:0010054 GO:0010154 GO:0010191 GO:0010192 GO:0010214 GO:0010384 GO:0010404 GO:0010405 GO:0012505 GO:0016740 GO:0016757 GO:0016758 GO:0018193 GO:0018208 GO:0018258 GO:0019538 GO:0021700 GO:0022414 GO:0022622 GO:0030154 GO:0032501 GO:0032502 GO:0034645 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043413 GO:0044036 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048316 GO:0048354 GO:0048359 GO:0048364 GO:0048468 GO:0048469 GO:0048608 GO:0048731 GO:0048764 GO:0048765 GO:0048856 GO:0048869 GO:0061458 GO:0070085 GO:0071554 GO:0071695 GO:0071704 GO:0080147 GO:0090558 GO:0090627 GO:0099402 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1905392 GO:1990714

KEGG Pathways

Metabolic & Signaling

ko00532 ko00534 ko01100 map00532 map00534 map01100

Pfam Domains

Protein Families

Galactosyl_T

Protein Analysis

289

Amino Acids

33.53

Weight (kDa)

9.46

Isoelectric Point (pI)

46.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017707)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g10190 FvH4_7g10191
prunus_persica	Prupe.2G131800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0347911
rosa_laevigata	RLG00000028704
rosa_multiflora	Rmu_ssc0000342.1_g000012
rosa_roxburghii	Rroxscaffold_4G00307380
rosa_rugosa	Rorug01G0190400
rosa_samantha	Rh1AG208800 Rh1BG173400 Rh1DG203400
rosa_wichuraiana	Rw1G017350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	665
AccII	CGCG	1 cut(s)	184
AciI	CCGC	5 cut(s)	184, 202, 205, 217, 375
AclWI	GGATC	3 cut(s)	169, 182, 819
AcoI	YGGCCR	1 cut(s)	723
AcsI	RAATTY	2 cut(s)	155, 627
AfaI	GTAC	3 cut(s)	89, 140, 566
AfiI	CCNNNNNNNGG	2 cut(s)	184, 579
AflII	CTTAAG	1 cut(s)	800
AflIII	ACRYGT	1 cut(s)	567
AgsI	TTSAA	4 cut(s)	79, 682, 833, 841
AjiI	CACGTC	1 cut(s)	262
AluBI	AGCT	2 cut(s)	621, 769
AluI	AGCT	2 cut(s)	621, 769
Alw21I	GWGCWC	1 cut(s)	761
Alw26I	GTCTC	1 cut(s)	773
AlwI	GGATC	3 cut(s)	169, 182, 819
Ama87I	CYCGRG	3 cut(s)	293, 470, 653
AoxI	GGCC	2 cut(s)	186, 723
ApeKI	GCWGC	2 cut(s)	279, 298
ApoI	RAATTY	2 cut(s)	155, 627
ArsI	GACNNNNNNTTYG	1 cut(s)	38
Asp700I	GAANNNNTTC	1 cut(s)	324
AspA2I	CCTAGG	1 cut(s)	503
AspS9I	GGNCC	2 cut(s)	186, 650
AsuC2I	CCSGG	2 cut(s)	574, 741
AsuNHI	GCTAGC	1 cut(s)	542
AvaI	CYCGRG	3 cut(s)	293, 470, 653
AvaII	GGWCC	1 cut(s)	650
AvrII	CCTAGG	1 cut(s)	503
BamHI	GGATCC	1 cut(s)	174
BbsI	GAAGAC	1 cut(s)	265
Bbv12I	GWGCWC	1 cut(s)	761
BbvI	GCAGC	2 cut(s)	291, 310
BccI	CCATC	3 cut(s)	263, 571, 679
BceAI	ACGGC	1 cut(s)	244
BcgI	CGANNNNNNTGC	2 cut(s)	461, 495
BcnI	CCSGG	2 cut(s)	574, 741
BcoDI	GTCTC	1 cut(s)	773
BfaI	CTAG	4 cut(s)	26, 504, 543, 865
BfmI	CTRYAG	1 cut(s)	277
BfrI	CTTAAG	1 cut(s)	800
BisI	GCNGC	4 cut(s)	205, 280, 299, 376
BlnI	CCTAGG	1 cut(s)	503
BlsI	GCNGC	4 cut(s)	206, 281, 300, 377
BmcAI	AGTACT	1 cut(s)	89
Bme1390I	CCNGG	2 cut(s)	574, 741
Bme18I	GGWCC	1 cut(s)	650
BmeT110I	CYCGRG	3 cut(s)	293, 470, 653
BmgBI	CACGTC	1 cut(s)	262
BmgT120I	GGNCC	2 cut(s)	186, 650
BmiI	GGNNCC	2 cut(s)	176, 652
BmrFI	CCNGG	2 cut(s)	574, 741
BmsI	GCATC	1 cut(s)	240
BmtI	GCTAGC	1 cut(s)	546
BpiI	GAAGAC	1 cut(s)	265
BpmI	CTGGAG	1 cut(s)	401
BpuEI	CTTGAG	1 cut(s)	476
BpuMI	CCSGG	2 cut(s)	574, 741
BsaAI	YACGTR	1 cut(s)	436
BsaBI	GATNNNNATC	1 cut(s)	173
BsaJI	CCNNGG	4 cut(s)	503, 633, 654, 849
BsaWI	WCCGGW	1 cut(s)	775
BsaXI	ACNNNNNCTCC	4 cut(s)	554, 584, 629, 659
Bsc4I	CCNNNNNNNGG	2 cut(s)	184, 579
Bse118I	RCCGGY	1 cut(s)	721
Bse1I	ACTGG	2 cut(s)	85, 235
Bse8I	GATNNNNATC	1 cut(s)	173
BseDI	CCNNGG	4 cut(s)	503, 633, 654, 849
BseGI	GGATG	5 cut(s)	231, 255, 339, 462, 582
BseJI	GATNNNNATC	1 cut(s)	173
BseLI	CCNNNNNNNGG	2 cut(s)	184, 579
BseMII	CTCAG	1 cut(s)	351
BseNI	ACTGG	2 cut(s)	85, 235
BseRI	GAGGAG	3 cut(s)	234, 388, 404
BseXI	GCAGC	2 cut(s)	291, 310
BsgI	GTGCAG	1 cut(s)	340
Bsh1236I	CGCG	1 cut(s)	184
Bsh1285I	CGRYCG	1 cut(s)	202
BshFI	GGCC	2 cut(s)	188, 725
BsiEI	CGRYCG	1 cut(s)	202
BsiHKAI	GWGCWC	1 cut(s)	761
BsiHKCI	CYCGRG	3 cut(s)	293, 470, 653
BsiSI	CCGG	5 cut(s)	466, 573, 722, 740, 776
BslFI	GGGAC	1 cut(s)	636
BslI	CCNNNNNNNGG	2 cut(s)	184, 579
BsmAI	GTCTC	1 cut(s)	773
BsmBI	CGTCTC	1 cut(s)	773
BsmFI	GGGAC	1 cut(s)	636
BsnI	GGCC	2 cut(s)	188, 725
BsoBI	CYCGRG	3 cut(s)	293, 470, 653
Bsp1286I	GDGCHC	1 cut(s)	761
Bsp143I	GATC	4 cut(s)	69, 168, 174, 811
BspACI	CCGC	5 cut(s)	184, 202, 205, 217, 375
BspANI	GGCC	2 cut(s)	188, 725
BspCNI	CTCAG	1 cut(s)	352
BspFNI	CGCG	1 cut(s)	184
BspHI	TCATGA	2 cut(s)	66, 165
BspLI	GGNNCC	2 cut(s)	176, 652
BspMAI	CTGCAG	1 cut(s)	281
BspOI	GCTAGC	1 cut(s)	546
BspPI	GGATC	3 cut(s)	169, 182, 819
BspTI	CTTAAG	1 cut(s)	800
BsrFI	RCCGGY	1 cut(s)	721
BsrI	ACTGG	2 cut(s)	85, 235
BssAI	RCCGGY	1 cut(s)	721
BssECI	CCNNGG	4 cut(s)	503, 633, 654, 849
BssMI	GATC	4 cut(s)	69, 168, 174, 811
BssT1I	CCWWGG	3 cut(s)	503, 633, 849
Bst4CI	ACNGT	1 cut(s)	784
BstAFI	CTTAAG	1 cut(s)	800
BstBAI	YACGTR	1 cut(s)	436
BstC8I	GCNNGC	4 cut(s)	186, 544, 723, 761
BstDEI	CTNAG	1 cut(s)	360
BstF5I	GGATG	5 cut(s)	231, 255, 339, 462, 582
BstFNI	CGCG	1 cut(s)	184
BstKTI	GATC	4 cut(s)	72, 171, 177, 814
BstMAI	GTCTC	1 cut(s)	773
BstMBI	GATC	4 cut(s)	69, 168, 174, 811
BstMCI	CGRYCG	1 cut(s)	202
BstNSI	RCATGY	1 cut(s)	571
BstSCI	CCNGG	2 cut(s)	572, 739
BstSFI	CTRYAG	1 cut(s)	277
BstSNI	TACGTA	1 cut(s)	436
BstUI	CGCG	1 cut(s)	184
BstV1I	GCAGC	2 cut(s)	291, 310
BstV2I	GAAGAC	1 cut(s)	265
BstX2I	RGATCY	1 cut(s)	174
BstYI	RGATCY	1 cut(s)	174
BsuRI	GGCC	2 cut(s)	188, 725
BtrI	CACGTC	1 cut(s)	262
BtsCI	GGATG	5 cut(s)	231, 255, 339, 462, 582
BtsI	GCAGTG	1 cut(s)	497
BtsIMutI	CAGTG	3 cut(s)	357, 497, 821
Cac8I	GCNNGC	4 cut(s)	186, 544, 723, 761
CciI	TCATGA	2 cut(s)	66, 165
Cfr10I	RCCGGY	1 cut(s)	721
Cfr13I	GGNCC	2 cut(s)	186, 650
Csp6I	GTAC	3 cut(s)	88, 139, 565
CspCI	CAANNNNNGTGG	2 cut(s)	465, 500
CviAII	CATG	8 cut(s)	67, 136, 166, 367, 547, 568, 727, 764
CviQI	GTAC	3 cut(s)	88, 139, 565
DdeI	CTNAG	1 cut(s)	360
DpnI	GATC	4 cut(s)	71, 170, 176, 813
DpnII	GATC	4 cut(s)	69, 168, 174, 811
DrdI	GACNNNNNNGTC	1 cut(s)	665
DseDI	GACNNNNNNGTC	1 cut(s)	665
EaeI	YGGCCR	1 cut(s)	723
EciI	GGCGGA	1 cut(s)	206
Eco105I	TACGTA	1 cut(s)	436
Eco130I	CCWWGG	3 cut(s)	503, 633, 849
Eco47I	GGWCC	1 cut(s)	650
Eco88I	CYCGRG	3 cut(s)	293, 470, 653
EcoT14I	CCWWGG	3 cut(s)	503, 633, 849
ErhI	CCWWGG	3 cut(s)	503, 633, 849
Esp3I	CGTCTC	1 cut(s)	773
FaeI	CATG	8 cut(s)	70, 139, 169, 370, 550, 571, 730, 767
FalI	AAGNNNNNCTT	2 cut(s)	257, 289
FaqI	GGGAC	1 cut(s)	636
FatI	CATG	8 cut(s)	66, 135, 165, 366, 546, 567, 726, 763
FauI	CCCGC	1 cut(s)	177
Fnu4HI	GCNGC	4 cut(s)	205, 280, 299, 376
FokI	GGATG	5 cut(s)	218, 242, 326, 449, 589
Fsp4HI	GCNGC	4 cut(s)	205, 280, 299, 376
FspBI	CTAG	4 cut(s)	26, 504, 543, 865
GluI	GCNGC	4 cut(s)	205, 280, 299, 376
GsuI	CTGGAG	1 cut(s)	401
HaeIII	GGCC	2 cut(s)	188, 725
HapII	CCGG	5 cut(s)	466, 573, 722, 740, 776
Hin1II	CATG	8 cut(s)	70, 139, 169, 370, 550, 571, 730, 767
HinfI	GANTC	1 cut(s)	550
HpaII	CCGG	5 cut(s)	466, 573, 722, 740, 776
Hpy188I	TCNGA	2 cut(s)	625, 671
Hpy188III	TCNNGA	4 cut(s)	67, 166, 172, 653
Hpy99I	CGWCG	2 cut(s)	455, 458
HpyAV	CCTTC	3 cut(s)	126, 436, 747
HpyCH4III	ACNGT	1 cut(s)	784
HpyCH4IV	ACGT	3 cut(s)	261, 435, 456
HpyCH4V	TGCA	2 cut(s)	279, 357
HpyF3I	CTNAG	1 cut(s)	360
HpySE526I	ACGT	3 cut(s)	261, 435, 456
Hsp92II	CATG	8 cut(s)	70, 139, 169, 370, 550, 571, 730, 767
KroI	GCCGGC	1 cut(s)	721
KroNI	GCCGGC	1 cut(s)	723
Kzo9I	GATC	4 cut(s)	69, 168, 174, 811
LmnI	GCTCC	1 cut(s)	408
Lsp1109I	GCAGC	2 cut(s)	291, 310
LweI	GCATC	1 cut(s)	240
MaeI	CTAG	4 cut(s)	26, 504, 543, 865
MaeII	ACGT	3 cut(s)	261, 435, 456
MaeIII	GTNAC	2 cut(s)	28, 844
MalI	GATC	4 cut(s)	71, 170, 176, 813
MboI	GATC	4 cut(s)	69, 168, 174, 811
MboII	GAAGA	6 cut(s)	16, 64, 67, 265, 694, 712
MflI	RGATCY	1 cut(s)	174
MhlI	GDGCHC	1 cut(s)	761
MluCI	AATT	3 cut(s)	125, 155, 627
MmeI	TCCRAC	1 cut(s)	649
MroNI	GCCGGC	1 cut(s)	721
MroXI	GAANNNNTTC	1 cut(s)	324
MseI	TTAA	2 cut(s)	801, 857
MspA1I	CMGCKG	1 cut(s)	375
MspCI	CTTAAG	1 cut(s)	800
MspI	CCGG	5 cut(s)	466, 573, 722, 740, 776
MspR9I	CCNGG	2 cut(s)	574, 741
MvnI	CGCG	1 cut(s)	184
NaeI	GCCGGC	1 cut(s)	723
NciI	CCSGG	2 cut(s)	574, 741
NdeII	GATC	4 cut(s)	69, 168, 174, 811
NgoMIV	GCCGGC	1 cut(s)	721
NheI	GCTAGC	1 cut(s)	542
NlaIII	CATG	8 cut(s)	70, 139, 169, 370, 550, 571, 730, 767
NlaIV	GGNNCC	2 cut(s)	176, 652
NspI	RCATGY	1 cut(s)	571
PaeR7I	CTCGAG	1 cut(s)	470
PagI	TCATGA	2 cut(s)	66, 165
PciI	ACATGT	1 cut(s)	567
PcsI	WCGNNNNNNNCGW	1 cut(s)	267
PdiI	GCCGGC	1 cut(s)	723
PdmI	GAANNNNTTC	1 cut(s)	324
PfeI	GAWTC	1 cut(s)	550
PfoI	TCCNGGA	2 cut(s)	572, 739
PkrI	GCNGC	4 cut(s)	206, 281, 300, 377
Ppu21I	YACGTR	1 cut(s)	436
PscI	ACATGT	1 cut(s)	567
PspN4I	GGNNCC	2 cut(s)	176, 652
PspPI	GGNCC	2 cut(s)	186, 650
PspXI	VCTCGAGB	1 cut(s)	470
PstI	CTGCAG	1 cut(s)	281
PsuI	RGATCY	1 cut(s)	174
RsaI	GTAC	3 cut(s)	89, 140, 566
RsaNI	GTAC	3 cut(s)	88, 139, 565
SaqAI	TTAA	2 cut(s)	801, 857
SatI	GCNGC	4 cut(s)	205, 280, 299, 376
Sau3AI	GATC	4 cut(s)	69, 168, 174, 811
Sau96I	GGNCC	2 cut(s)	186, 650
ScaI	AGTACT	1 cut(s)	89
ScrFI	CCNGG	2 cut(s)	574, 741
SduI	GDGCHC	1 cut(s)	761
SfaNI	GCATC	1 cut(s)	240
SfcI	CTRYAG	1 cut(s)	277
Sfr274I	CTCGAG	1 cut(s)	470
SinI	GGWCC	1 cut(s)	650
SlaI	CTCGAG	1 cut(s)	470
SmlI	CTYRAG	3 cut(s)	470, 491, 800
SmoI	CTYRAG	3 cut(s)	470, 491, 800
SnaBI	TACGTA	1 cut(s)	436
Sse9I	AATT	3 cut(s)	125, 155, 627
SsiI	CCGC	5 cut(s)	184, 202, 205, 217, 375
SspI	AATATT	1 cut(s)	836
SspMI	CTAG	4 cut(s)	26, 504, 543, 865
StyD4I	CCNGG	2 cut(s)	572, 739
StyI	CCWWGG	3 cut(s)	503, 633, 849
TaaI	ACNGT	1 cut(s)	784
TaiI	ACGT	3 cut(s)	264, 438, 459
TaqI	TCGA	3 cut(s)	318, 333, 471
TasI	AATT	3 cut(s)	125, 155, 627
TatI	WGTACW	2 cut(s)	87, 564
TauI	GCSGC	2 cut(s)	207, 378
TfiI	GAWTC	1 cut(s)	550
Tru1I	TTAA	2 cut(s)	801, 857
Tru9I	TTAA	2 cut(s)	801, 857
TscAI	CASTG	3 cut(s)	364, 504, 821
TseI	GCWGC	2 cut(s)	279, 298
TspDTI	ATGAA	7 cut(s)	17, 55, 383, 451, 455, 563, 782
TspGWI	ACGGA	1 cut(s)	765
TspRI	CASTG	3 cut(s)	364, 504, 821
Vha464I	CTTAAG	1 cut(s)	800
VpaK11BI	GGWCC	1 cut(s)	650
XapI	RAATTY	2 cut(s)	155, 627
XceI	RCATGY	1 cut(s)	571
XhoI	CTCGAG	1 cut(s)	470
XmaJI	CCTAGG	1 cut(s)	503
XmnI	GAANNNNTTC	1 cut(s)	324
XspI	CTAG	4 cut(s)	26, 504, 543, 865
ZrmI	AGTACT	1 cut(s)	89

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.