FvH4_7g10690

Zinc-dependent metalloprotease

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0016658
Physical Location & Seq
Forward (+)
10029443 .. 10030707
1265 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g10690.t1

Sequence Viewer

Length: 846 bp
ATGTTTCGGTTATTCAGTTGCTCTCTCTCCCTCTTTATCTTCTTCCTCAACTTCCCGCCATGTTTACCTACTAGAACAGCCACCAAAAACACTGGAATCTCTGAGATTATTGCAGCGCCGAGATGTGGCGCACCACCACCGGACATGAACTCAAGTACCAGCTGCTTGCATGGCATGAAACATTACGTGTATTTCCCCGGAAAACCTCGGTGGGTGCCACGCACGATACCCATGAAACTCACCTACGCTTTCTCTCCAGAGAACATGATTAGTTACTTGAGCTCGTCCGATATCCGAGACGCATTTAAACGTTCTTTTGATCGTTGGGGGTCGGTTATTCCGGTGAGCTTCTCTGAGACGGAAGACTACGGCTTCTCGGATATCAAAATAGGGTTTTACGCCGGGGATCACGGTGACGGAGAGCCTTTCGACGGCGTGCTTGGTATTTTAGCTCACTCGTTTTCGCCGGAGACAGGGAGGCTCCACCTTGATGTGGCGGAGACTTGGGCGGTGGACTTTAGGTTGGAGAAATCTCCGGTGGCTGTCGATTTGGAGTCGGTGGCGACTCATGAGATCGGGCATTTGCTAGGGTTAGGGCATAGTACGGTGAAAGAGGCTGTGATGTACCCGAATTTGAGGCCTAGAGAAAAGAAGGTTGATTTACAGGTTGATGATGTTGAAGGAGTTCAAGCTTTGTATGGATCGAACCCCAATTATACAGGTGGTGCTTTATCAGAGTTAGAATACAGTACTTCAACAAATCAGGGCGTTGATTTCCGGAGTAGACCATCAAGATGGGCAAACTTCGTCGTTGTTTTGGCTATCTGGTTGTGCTATTACTTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_M10

Protein Analysis

282

Amino Acids

31.39

Weight (kDa)

5.75

Isoelectric Point (pI)

42.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_M10 PF00413 79 - 234 2.5e-48 Matrixin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016658)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G45040
fragaria_vesca FvH4_7g10690
malus_domestica MD00G1063700.v1.1
prunus_persica Prupe.2G135100_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0348631
rosa_laevigata RLG00000028634
rosa_multiflora Rmu_sc0004109.1_g000009
rosa_roxburghii Rroxscaffold_4G00306870
rosa_rugosa Rorug01G0195900
rosa_samantha Rh1AG213600 Rh1BG180100 Rh1CG198200 Rh1DG210000
rosa_wichuraiana Rw1G018090

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 214
AccI GTMKAC 1 cut(s) 784
AccIII TCCGGA 1 cut(s) 777
AciI CCGC 3 cut(s) 56, 497, 509
AclI AACGTT 1 cut(s) 310
AclWI GGATC 2 cut(s) 414, 709
AcsI RAATTY 1 cut(s) 631
AfaI GTAC 4 cut(s) 157, 604, 626, 751
AfiI CCNNNNNNNGG 4 cut(s) 125, 431, 473, 493
AflIII ACRYGT 1 cut(s) 186
AgsI TTSAA 3 cut(s) 680, 689, 756
AluBI AGCT 5 cut(s) 162, 282, 348, 452, 692
AluI AGCT 5 cut(s) 162, 282, 348, 452, 692
Alw21I GWGCWC 1 cut(s) 284
Alw26I GTCTC 4 cut(s) 291, 350, 464, 494
AlwI GGATC 2 cut(s) 414, 709
Aor13HI TCCGGA 1 cut(s) 777
AoxI GGCC 1 cut(s) 638
ApeKI GCWGC 2 cut(s) 113, 162
ApoI RAATTY 1 cut(s) 631
Asp700I GAANNNNTTC 1 cut(s) 684
AspLEI GCGC 2 cut(s) 118, 131
AsuC2I CCSGG 2 cut(s) 198, 403
AsuHPI GGTGA 4 cut(s) 232, 355, 425, 619
BaeI ACNNNNGTAYC 2 cut(s) 139, 172
BanI GGYRCC 1 cut(s) 214
BanII GRGCYC 1 cut(s) 284
BbsI GAAGAC 1 cut(s) 369
Bbv12I GWGCWC 1 cut(s) 284
BbvI GCAGC 2 cut(s) 125, 149
BccI CCATC 2 cut(s) 789, 796
BceAI ACGGC 2 cut(s) 385, 448
BcnI CCSGG 2 cut(s) 198, 403
BcoDI GTCTC 4 cut(s) 291, 350, 464, 494
BfaI CTAG 3 cut(s) 72, 587, 642
BfoI RGCGCY 1 cut(s) 119
BisI GCNGC 2 cut(s) 114, 163
BlsI GCNGC 2 cut(s) 115, 164
BmcAI AGTACT 1 cut(s) 751
Bme1390I CCNGG 2 cut(s) 198, 403
BmiI GGNNCC 2 cut(s) 216, 482
BmrFI CCNGG 2 cut(s) 198, 403
BpiI GAAGAC 1 cut(s) 369
BpmI CTGGAG 1 cut(s) 240
BpuEI CTTGAG 2 cut(s) 136, 298
BpuMI CCSGG 2 cut(s) 198, 403
BsaAI YACGTR 1 cut(s) 187
BsaJI CCNNGG 3 cut(s) 196, 206, 402
BsaWI WCCGGW 4 cut(s) 139, 340, 535, 777
Bsc4I CCNNNNNNNGG 4 cut(s) 125, 431, 473, 493
Bse1I ACTGG 1 cut(s) 97
BseAI TCCGGA 1 cut(s) 777
BseDI CCNNGG 3 cut(s) 196, 206, 402
BseLI CCNNNNNNNGG 4 cut(s) 125, 431, 473, 493
BseMII CTCAG 2 cut(s) 93, 345
BseNI ACTGG 1 cut(s) 97
BseXI GCAGC 2 cut(s) 125, 149
BshFI GGCC 1 cut(s) 640
BshNI GGYRCC 1 cut(s) 214
BsiHKAI GWGCWC 1 cut(s) 284
BsiSI CCGG 7 cut(s) 140, 198, 341, 402, 467, 536, 778
BslI CCNNNNNNNGG 4 cut(s) 125, 431, 473, 493
BsmAI GTCTC 4 cut(s) 291, 350, 464, 494
BsmBI CGTCTC 2 cut(s) 291, 350
BsnI GGCC 1 cut(s) 640
Bsp1286I GDGCHC 1 cut(s) 284
Bsp13I TCCGGA 1 cut(s) 777
Bsp143I GATC 4 cut(s) 319, 406, 573, 701
BspACI CCGC 3 cut(s) 56, 497, 509
BspANI GGCC 1 cut(s) 640
BspCNI CTCAG 2 cut(s) 94, 346
BspEI TCCGGA 1 cut(s) 777
BspHI TCATGA 1 cut(s) 568
BspLI GGNNCC 2 cut(s) 216, 482
BspPI GGATC 2 cut(s) 414, 709
BspT107I GGYRCC 1 cut(s) 214
BsrI ACTGG 1 cut(s) 97
BssECI CCNNGG 3 cut(s) 196, 206, 402
BssMI GATC 4 cut(s) 319, 406, 573, 701
Bst4CI ACNGT 3 cut(s) 413, 607, 749
BstBAI YACGTR 1 cut(s) 187
BstC8I GCNNGC 2 cut(s) 167, 437
BstDEI CTNAG 2 cut(s) 102, 354
BstH2I RGCGCY 1 cut(s) 119
BstHHI GCGC 2 cut(s) 118, 131
BstKTI GATC 4 cut(s) 322, 409, 576, 704
BstMAI GTCTC 4 cut(s) 291, 350, 464, 494
BstMBI GATC 4 cut(s) 319, 406, 573, 701
BstMWI GCNNNNNNNGC 1 cut(s) 171
BstSCI CCNGG 2 cut(s) 196, 401
BstV1I GCAGC 2 cut(s) 125, 149
BstV2I GAAGAC 1 cut(s) 369
BstXI CCANNNNNNTGG 1 cut(s) 795
BsuRI GGCC 1 cut(s) 640
BtsIMutI CAGTG 1 cut(s) 90
Cac8I GCNNGC 2 cut(s) 167, 437
CciI TCATGA 1 cut(s) 568
CfoI GCGC 2 cut(s) 118, 131
CseI GACGC 1 cut(s) 308
Csp6I GTAC 4 cut(s) 156, 603, 625, 750
CviAII CATG 7 cut(s) 60, 145, 170, 175, 232, 265, 569
CviQI GTAC 4 cut(s) 156, 603, 625, 750
DdeI CTNAG 2 cut(s) 102, 354
DpnI GATC 4 cut(s) 321, 408, 575, 703
DpnII GATC 4 cut(s) 319, 406, 573, 701
DraI TTTAAA 1 cut(s) 307
EciI GGCGGA 1 cut(s) 512
Ecl136II GAGCTC 1 cut(s) 282
Eco147I AGGCCT 1 cut(s) 640
Eco24I GRGCYC 1 cut(s) 284
Eco32I GATATC 2 cut(s) 292, 382
Eco53kI GAGCTC 1 cut(s) 282
EcoICRI GAGCTC 1 cut(s) 282
EcoRV GATATC 2 cut(s) 292, 382
EcoT38I GRGCYC 1 cut(s) 284
Esp3I CGTCTC 2 cut(s) 291, 350
FaeI CATG 7 cut(s) 63, 148, 173, 178, 235, 268, 572
FatI CATG 7 cut(s) 59, 144, 169, 174, 231, 264, 568
FauI CCCGC 1 cut(s) 63
FblI GTMKAC 1 cut(s) 784
Fnu4HI GCNGC 2 cut(s) 114, 163
FriOI GRGCYC 1 cut(s) 284
Fsp4HI GCNGC 2 cut(s) 114, 163
FspBI CTAG 3 cut(s) 72, 587, 642
GlaI GCGC 2 cut(s) 117, 130
GluI GCNGC 2 cut(s) 114, 163
GsuI CTGGAG 1 cut(s) 240
HaeII RGCGCY 1 cut(s) 119
HaeIII GGCC 1 cut(s) 640
HapII CCGG 7 cut(s) 140, 198, 341, 402, 467, 536, 778
HgaI GACGC 1 cut(s) 308
HhaI GCGC 2 cut(s) 118, 131
Hin1II CATG 7 cut(s) 63, 148, 173, 178, 235, 268, 572
Hin6I GCGC 2 cut(s) 116, 129
HinP1I GCGC 2 cut(s) 116, 129
HindIII AAGCTT 1 cut(s) 690
HinfI GANTC 3 cut(s) 96, 554, 565
HpaII CCGG 7 cut(s) 140, 198, 341, 402, 467, 536, 778
HphI GGTGA 4 cut(s) 232, 355, 425, 619
Hpy166II GTNNAC 3 cut(s) 65, 514, 785
Hpy188I TCNGA 6 cut(s) 103, 289, 296, 355, 379, 736
Hpy188III TCNNGA 4 cut(s) 257, 569, 778, 792
Hpy8I GTNNAC 3 cut(s) 65, 514, 785
Hpy99I CGWCG 2 cut(s) 434, 812
HpyAV CCTTC 2 cut(s) 646, 674
HpyCH4III ACNGT 3 cut(s) 413, 607, 749
HpyCH4IV ACGT 2 cut(s) 186, 310
HpyCH4V TGCA 2 cut(s) 113, 169
HpyF10VI GCNNNNNNNGC 1 cut(s) 171
HpyF3I CTNAG 2 cut(s) 102, 354
HpySE526I ACGT 2 cut(s) 186, 310
Hsp92II CATG 7 cut(s) 63, 148, 173, 178, 235, 268, 572
HspAI GCGC 2 cut(s) 116, 129
Kpn2I TCCGGA 1 cut(s) 777
Kzo9I GATC 4 cut(s) 319, 406, 573, 701
LmnI GCTCC 1 cut(s) 486
Lsp1109I GCAGC 2 cut(s) 125, 149
MaeI CTAG 3 cut(s) 72, 587, 642
MaeII ACGT 2 cut(s) 186, 310
MaeIII GTNAC 2 cut(s) 272, 413
MalI GATC 4 cut(s) 321, 408, 575, 703
MboI GATC 4 cut(s) 319, 406, 573, 701
MboII GAAGA 3 cut(s) 31, 34, 374
MhlI GDGCHC 1 cut(s) 284
MluCI AATT 2 cut(s) 631, 712
MlyI GAGTC 2 cut(s) 559, 563
MmeI TCCRAC 1 cut(s) 504
MnlI CCTC 6 cut(s) 41, 56, 216, 471, 607, 630
MroI TCCGGA 1 cut(s) 777
MroXI GAANNNNTTC 1 cut(s) 684
MseI TTAA 1 cut(s) 306
MslI CAYNNNNRTG 2 cut(s) 489, 793
MspA1I CMGCKG 1 cut(s) 162
MspI CCGG 7 cut(s) 140, 198, 341, 402, 467, 536, 778
MspR9I CCNGG 2 cut(s) 198, 403
MwoI GCNNNNNNNGC 1 cut(s) 171
NciI CCSGG 2 cut(s) 198, 403
NdeII GATC 4 cut(s) 319, 406, 573, 701
NlaIII CATG 7 cut(s) 63, 148, 173, 178, 235, 268, 572
NlaIV GGNNCC 2 cut(s) 216, 482
NmeAIII GCCGAG 1 cut(s) 144
NmuCI GTSAC 1 cut(s) 413
PagI TCATGA 1 cut(s) 568
PceI AGGCCT 1 cut(s) 640
PdmI GAANNNNTTC 1 cut(s) 684
PfeI GAWTC 1 cut(s) 96
PkrI GCNGC 2 cut(s) 115, 164
PleI GAGTC 2 cut(s) 559, 562
PpsI GAGTC 2 cut(s) 559, 562
Ppu21I YACGTR 1 cut(s) 187
Psp124BI GAGCTC 1 cut(s) 284
Psp1406I AACGTT 1 cut(s) 310
PspN4I GGNNCC 2 cut(s) 216, 482
PvuII CAGCTG 1 cut(s) 162
RsaI GTAC 4 cut(s) 157, 604, 626, 751
RsaNI GTAC 4 cut(s) 156, 603, 625, 750
RseI CAYNNNNRTG 2 cut(s) 489, 793
SacI GAGCTC 1 cut(s) 284
SaqAI TTAA 1 cut(s) 306
SatI GCNGC 2 cut(s) 114, 163
Sau3AI GATC 4 cut(s) 319, 406, 573, 701
ScaI AGTACT 1 cut(s) 751
SchI GAGTC 2 cut(s) 559, 563
ScrFI CCNGG 2 cut(s) 198, 403
SduI GDGCHC 1 cut(s) 284
SmiMI CAYNNNNRTG 2 cut(s) 489, 793
SmlI CTYRAG 2 cut(s) 151, 277
SmoI CTYRAG 2 cut(s) 151, 277
Sse9I AATT 2 cut(s) 631, 712
SseBI AGGCCT 1 cut(s) 640
SsiI CCGC 3 cut(s) 56, 497, 509
SspMI CTAG 3 cut(s) 72, 587, 642
SstI GAGCTC 1 cut(s) 284
StuI AGGCCT 1 cut(s) 640
StyD4I CCNGG 2 cut(s) 196, 401
TaaI ACNGT 3 cut(s) 413, 607, 749
TaiI ACGT 2 cut(s) 189, 313
TaqI TCGA 3 cut(s) 429, 546, 704
TasI AATT 2 cut(s) 631, 712
TatI WGTACW 1 cut(s) 749
TfiI GAWTC 1 cut(s) 96
Tru1I TTAA 1 cut(s) 306
Tru9I TTAA 1 cut(s) 306
TscAI CASTG 1 cut(s) 97
TseFI GTSAC 1 cut(s) 413
TseI GCWGC 2 cut(s) 113, 162
Tsp45I GTSAC 1 cut(s) 413
TspDTI ATGAA 3 cut(s) 161, 191, 248
TspGWI ACGGA 2 cut(s) 374, 432
TspRI CASTG 1 cut(s) 97
XapI RAATTY 1 cut(s) 631
XmiI GTMKAC 1 cut(s) 784
XmnI GAANNNNTTC 1 cut(s) 684
XspI CTAG 3 cut(s) 72, 587, 642
ZrmI AGTACT 1 cut(s) 751
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.