Rorug01G0195900

Zinc-dependent metalloprotease

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0016658
Physical Location & Seq
Reverse (-)
27458738 .. 27459607
870 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0195900.1

Sequence Viewer

Length: 870 bp
ATGGCTGGGTTAGACTTGGGCTCAGCATCTCGCTTGTTTCATCAGCAGCTCCAGCTCCCCGACCTTCACCTCCAAAGACCACCGGAATCTGAAGATCATGACAACCTCTTCAACTCGGATCACCACCACCAAAACGACGTCGGTGATGATGACAGCAATCTTCGCCAAGGGCTTGACCTTGTGACCCCAAACTCCGGAGGCTCTGGCGGAGATGGTACGGCTCGAAGGTCCAGGGGTCGGCCTCCGGGGTCAAGAAACAGGCCCAAACCTCCGGTGATCATAACCCGGGAGAGCGCCAACACTCTCAGAGCTCATATTCTGGAGGTCAGCAGCGGCTGCGATGTGTTCGACTGCGTTGGCACCTACGCCCGGAAGCGGCAGCGTGGGATTTGCGTCTTGAGTGGGAGTGGGATGGTGACCAACGTGACCTTGCGCCAGCCGGCTGGGGCTGGCGCAGTGGTCACGCTACACGGCAGGTTCGAGATCCTGTCGCTGACCGGCTCATTCCTGCCGCCGCCTGCCCCACCAGGCGCCACCAGCCTGACGATATTCTTGGCAGGCGGTCAGGGCCAGGTCGTGGGAGGAAATGTTGTGGGACCTCTCATAGCATCAGGACCTGTGATCGTCATAGCTTCTTCTTTTACCAACGTGGCTTATGAGAGGTTGCCGTTGGAGGAGGAAGAGGAGCAGCTGCAGATTCAGCCGCCTGTGCCGCAGTCTTCCGGCGGAGGCGGAAGTGGAGGAGTAGGCAATAACAACCCATTTCCAGATCCGTCTTCGGGGCTCCCCTTCTTCAATCTGCCCCTGAATAACATGCCTCAGCTACAAGATGGTTGGGCTGGAAACCCTACTGGGCGGCCATCATATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_M10

Protein Analysis

289

Amino Acids

30.32

Weight (kDa)

5.72

Isoelectric Point (pI)

61.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PCC PF03479 103 - 216 9.1e-23 Plants and Prokaryotes Conserved (PCC) domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016658)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G45040
fragaria_vesca FvH4_7g10690
malus_domestica MD00G1063700.v1.1
prunus_persica Prupe.2G135100_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0348631
rosa_laevigata RLG00000028634
rosa_multiflora Rmu_sc0004109.1_g000009
rosa_roxburghii Rroxscaffold_4G00306870
rosa_rugosa Rorug01G0195900
rosa_samantha Rh1AG213600 Rh1BG180100 Rh1CG198200 Rh1DG210000
rosa_wichuraiana Rw1G018090

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 141
Acc36I ACCTGC 1 cut(s) 465
AccB1I GGYRCC 2 cut(s) 359, 530
AccB7I CCANNNNNTGG 1 cut(s) 577
AccIII TCCGGA 1 cut(s) 194
AclWI GGATC 3 cut(s) 126, 478, 764
AcoI YGGCCR 1 cut(s) 857
AcuI CTGAAG 1 cut(s) 111
AcyI GRCGYC 2 cut(s) 138, 531
AfaI GTAC 1 cut(s) 217
AfiI CCNNNNNNNGG 6 cut(s) 194, 237, 369, 375, 577, 779
AgsI TTSAA 2 cut(s) 112, 796
AjnI CCWGG 3 cut(s) 230, 526, 570
AluBI AGCT 6 cut(s) 49, 55, 311, 632, 691, 823
AluI AGCT 6 cut(s) 49, 55, 311, 632, 691, 823
Alw21I GWGCWC 1 cut(s) 313
AlwI GGATC 3 cut(s) 126, 478, 764
AlwNI CAGNNNCTG 2 cut(s) 336, 617
Ama87I CYCGRG 1 cut(s) 285
Aor13HI TCCGGA 1 cut(s) 194
AoxI GGCC 4 cut(s) 239, 260, 568, 857
ApeKI GCWGC 6 cut(s) 46, 330, 336, 379, 688, 691
AspLEI GCGC 4 cut(s) 296, 435, 455, 533
AspS9I GGNCC 5 cut(s) 228, 261, 568, 596, 614
AsuC2I CCSGG 4 cut(s) 246, 286, 287, 370
AsuHPI GGTGA 5 cut(s) 59, 113, 155, 286, 427
AvaI CYCGRG 1 cut(s) 285
AvaII GGWCC 3 cut(s) 228, 596, 614
BanI GGYRCC 2 cut(s) 359, 530
BanII GRGCYC 3 cut(s) 23, 313, 786
BbsI GAAGAC 2 cut(s) 711, 768
Bbv12I GWGCWC 1 cut(s) 313
BbvCI CCTCAGC 1 cut(s) 819
BbvI GCAGC 6 cut(s) 58, 323, 342, 391, 678, 700
BccI CCATC 4 cut(s) 206, 406, 824, 868
BceAI ACGGC 3 cut(s) 234, 487, 652
BciT130I CCWGG 3 cut(s) 232, 528, 572
BclI TGATCA 1 cut(s) 276
BcnI CCSGG 4 cut(s) 246, 286, 287, 370
BfmI CTRYAG 1 cut(s) 692
BfoI RGCGCY 2 cut(s) 297, 534
BfuAI ACCTGC 1 cut(s) 465
BlpI GCTNAGC 1 cut(s) 22
Bme1390I CCNGG 7 cut(s) 232, 246, 286, 287, 370, 528, 572
Bme18I GGWCC 3 cut(s) 228, 596, 614
BmeT110I CYCGRG 1 cut(s) 285
BmgT120I GGNCC 5 cut(s) 228, 261, 568, 596, 614
BmiI GGNNCC 4 cut(s) 361, 532, 597, 785
BmrFI CCNGG 7 cut(s) 232, 246, 286, 287, 370, 528, 572
BmrI ACTGGG 1 cut(s) 861
BmsI GCATC 2 cut(s) 35, 617
BmuI ACTGGG 1 cut(s) 861
BpiI GAAGAC 2 cut(s) 711, 768
BpmI CTGGAG 2 cut(s) 35, 341
Bpu10I CCTNAGC 1 cut(s) 819
Bpu1102I GCTNAGC 1 cut(s) 22
BpuEI CTTGAG 1 cut(s) 418
BpuMI CCSGG 4 cut(s) 246, 286, 287, 370
BsaHI GRCGYC 2 cut(s) 138, 531
BsaJI CCNNGG 4 cut(s) 166, 231, 245, 285
BsaWI WCCGGW 3 cut(s) 82, 194, 271
BsaXI ACNNNNNCTCC 2 cut(s) 573, 603
Bsc4I CCNNNNNNNGG 6 cut(s) 194, 237, 369, 375, 577, 779
Bse118I RCCGGY 2 cut(s) 439, 497
Bse1I ACTGG 1 cut(s) 856
BseAI TCCGGA 1 cut(s) 194
BseBI CCWGG 3 cut(s) 232, 528, 572
BseDI CCNNGG 4 cut(s) 166, 231, 245, 285
BseGI GGATG 1 cut(s) 417
BseLI CCNNNNNNNGG 6 cut(s) 194, 237, 369, 375, 577, 779
BseMII CTCAG 3 cut(s) 36, 319, 833
BseNI ACTGG 1 cut(s) 856
BseRI GAGGAG 3 cut(s) 689, 698, 756
BseXI GCAGC 6 cut(s) 58, 323, 342, 391, 678, 700
BseYI CCCAGC 2 cut(s) 5, 443
BshFI GGCC 4 cut(s) 241, 262, 570, 859
BshNI GGYRCC 2 cut(s) 359, 530
BsiHKAI GWGCWC 1 cut(s) 313
BsiHKCI CYCGRG 1 cut(s) 285
BsiSI CCGG 9 cut(s) 83, 195, 245, 272, 286, 370, 440, 498, 723
BslFI GGGAC 1 cut(s) 609
BslI CCNNNNNNNGG 6 cut(s) 194, 237, 369, 375, 577, 779
BsmFI GGGAC 1 cut(s) 609
BsnI GGCC 4 cut(s) 241, 262, 570, 859
BsoBI CYCGRG 1 cut(s) 285
Bsp1286I GDGCHC 3 cut(s) 23, 313, 786
Bsp13I TCCGGA 1 cut(s) 194
Bsp143I GATC 6 cut(s) 94, 118, 276, 483, 621, 769
Bsp1720I GCTNAGC 1 cut(s) 22
BspANI GGCC 4 cut(s) 241, 262, 570, 859
BspCNI CTCAG 3 cut(s) 35, 318, 832
BspEI TCCGGA 1 cut(s) 194
BspHI TCATGA 1 cut(s) 97
BspLI GGNNCC 4 cut(s) 361, 532, 597, 785
BspMAI CTGCAG 1 cut(s) 696
BspMI ACCTGC 1 cut(s) 465
BspPI GGATC 3 cut(s) 126, 478, 764
BspT107I GGYRCC 2 cut(s) 359, 530
BsrFI RCCGGY 2 cut(s) 439, 497
BsrI ACTGG 1 cut(s) 856
BssAI RCCGGY 2 cut(s) 439, 497
BssECI CCNNGG 4 cut(s) 166, 231, 245, 285
BssMI GATC 6 cut(s) 94, 118, 276, 483, 621, 769
BssNI GRCGYC 2 cut(s) 138, 531
BssT1I CCWWGG 1 cut(s) 166
Bst2UI CCWGG 3 cut(s) 232, 528, 572
Bst6I CTCTTC 2 cut(s) 113, 675
BstACI GRCGYC 2 cut(s) 138, 531
BstAPI GCANNNNNTGC 1 cut(s) 336
BstC8I GCNNGC 5 cut(s) 437, 441, 451, 519, 559
BstDEI CTNAG 3 cut(s) 22, 305, 819
BstEII GGTNACC 1 cut(s) 415
BstF5I GGATG 1 cut(s) 417
BstH2I RGCGCY 2 cut(s) 297, 534
BstHHI GCGC 4 cut(s) 296, 435, 455, 533
BstKTI GATC 6 cut(s) 97, 121, 279, 486, 624, 772
BstMBI GATC 6 cut(s) 94, 118, 276, 483, 621, 769
BstMWI GCNNNNNNNGC 8 cut(s) 52, 162, 336, 537, 567, 700, 709, 712
BstNI CCWGG 3 cut(s) 232, 528, 572
BstNSI RCATGY 1 cut(s) 817
BstPI GGTNACC 1 cut(s) 415
BstSCI CCNGG 7 cut(s) 230, 244, 284, 285, 368, 526, 570
BstSFI CTRYAG 1 cut(s) 692
BstV1I GCAGC 6 cut(s) 58, 323, 342, 391, 678, 700
BstV2I GAAGAC 2 cut(s) 711, 768
BstX2I RGATCY 2 cut(s) 483, 769
BstXI CCANNNNNNTGG 1 cut(s) 443
BstYI RGATCY 2 cut(s) 483, 769
BsuRI GGCC 4 cut(s) 241, 262, 570, 859
BtgZI GCGATG 1 cut(s) 354
BtsCI GGATG 1 cut(s) 417
BtsI GCAGTG 1 cut(s) 462
BtsIMutI CAGTG 1 cut(s) 462
BveI ACCTGC 1 cut(s) 465
Cac8I GCNNGC 5 cut(s) 437, 441, 451, 519, 559
CaiI CAGNNNCTG 2 cut(s) 336, 617
CciI TCATGA 1 cut(s) 97
CfoI GCGC 4 cut(s) 296, 435, 455, 533
Cfr10I RCCGGY 2 cut(s) 439, 497
Cfr13I GGNCC 5 cut(s) 228, 261, 568, 596, 614
Cfr9I CCCGGG 1 cut(s) 285
CseI GACGC 1 cut(s) 382
Csp6I GTAC 1 cut(s) 216
CviAII CATG 2 cut(s) 98, 814
CviQI GTAC 1 cut(s) 216
DdeI CTNAG 3 cut(s) 22, 305, 819
DinI GGCGCC 1 cut(s) 532
DpnI GATC 6 cut(s) 96, 120, 278, 485, 623, 771
DpnII GATC 6 cut(s) 94, 118, 276, 483, 621, 769
EaeI YGGCCR 1 cut(s) 857
Eam1104I CTCTTC 2 cut(s) 113, 675
EarI CTCTTC 2 cut(s) 113, 675
EciI GGCGGA 3 cut(s) 222, 741, 747
Ecl136II GAGCTC 1 cut(s) 311
Eco130I CCWWGG 1 cut(s) 166
Eco24I GRGCYC 3 cut(s) 23, 313, 786
Eco47I GGWCC 3 cut(s) 228, 596, 614
Eco53kI GAGCTC 1 cut(s) 311
Eco57I CTGAAG 1 cut(s) 111
Eco88I CYCGRG 1 cut(s) 285
Eco91I GGTNACC 1 cut(s) 415
EcoICRI GAGCTC 1 cut(s) 311
EcoO109I RGGNCCY 2 cut(s) 596, 614
EcoO65I GGTNACC 1 cut(s) 415
EcoRII CCWGG 3 cut(s) 230, 526, 570
EcoT14I CCWWGG 1 cut(s) 166
EcoT38I GRGCYC 3 cut(s) 23, 313, 786
EgeI GGCGCC 1 cut(s) 532
EheI GGCGCC 1 cut(s) 532
ErhI CCWWGG 1 cut(s) 166
FaeI CATG 2 cut(s) 101, 817
FaiI YATR 8 cut(s) 99, 281, 315, 605, 629, 657, 815, 865
FaqI GGGAC 1 cut(s) 609
FatI CATG 2 cut(s) 97, 813
FbaI TGATCA 1 cut(s) 276
FokI GGATG 1 cut(s) 424
FriOI GRGCYC 3 cut(s) 23, 313, 786
GlaI GCGC 4 cut(s) 295, 434, 454, 532
GsaI CCCAGC 2 cut(s) 9, 447
GsuI CTGGAG 2 cut(s) 35, 341
HaeII RGCGCY 2 cut(s) 297, 534
HaeIII GGCC 4 cut(s) 241, 262, 570, 859
HapII CCGG 9 cut(s) 83, 195, 245, 272, 286, 370, 440, 498, 723
HgaI GACGC 1 cut(s) 382
HhaI GCGC 4 cut(s) 296, 435, 455, 533
Hin1I GRCGYC 2 cut(s) 138, 531
Hin1II CATG 2 cut(s) 101, 817
Hin6I GCGC 4 cut(s) 294, 433, 453, 531
HinP1I GCGC 4 cut(s) 294, 433, 453, 531
HinfI GANTC 2 cut(s) 86, 697
HpaII CCGG 9 cut(s) 83, 195, 245, 272, 286, 370, 440, 498, 723
HphI GGTGA 5 cut(s) 59, 113, 155, 286, 427
Hpy188I TCNGA 3 cut(s) 91, 118, 308
Hpy188III TCNNGA 8 cut(s) 98, 195, 252, 320, 397, 481, 612, 767
Hpy99I CGWCG 2 cut(s) 140, 143
HpyAV CCTTC 3 cut(s) 74, 219, 799
HpyCH4IV ACGT 3 cut(s) 138, 423, 648
HpyCH4V TGCA 1 cut(s) 694
HpyF10VI GCNNNNNNNGC 8 cut(s) 52, 162, 336, 537, 567, 700, 709, 712
HpyF3I CTNAG 3 cut(s) 22, 305, 819
HpySE526I ACGT 3 cut(s) 138, 423, 648
Hsp92I GRCGYC 2 cut(s) 138, 531
Hsp92II CATG 2 cut(s) 101, 817
HspAI GCGC 4 cut(s) 294, 433, 453, 531
KasI GGCGCC 1 cut(s) 530
Kpn2I TCCGGA 1 cut(s) 194
KroI GCCGGC 1 cut(s) 439
KroNI GCCGGC 1 cut(s) 441
Ksp22I TGATCA 1 cut(s) 276
Kzo9I GATC 6 cut(s) 94, 118, 276, 483, 621, 769
LmnI GCTCC 4 cut(s) 54, 60, 685, 789
Lsp1109I GCAGC 6 cut(s) 58, 323, 342, 391, 678, 700
LweI GCATC 2 cut(s) 35, 617
MaeII ACGT 3 cut(s) 138, 423, 648
MaeIII GTNAC 4 cut(s) 181, 415, 424, 460
MalI GATC 6 cut(s) 96, 120, 278, 485, 623, 771
MboI GATC 6 cut(s) 94, 118, 276, 483, 621, 769
MboII GAAGA 8 cut(s) 100, 104, 152, 627, 692, 711, 768, 784
MflI RGATCY 2 cut(s) 483, 769
MhlI GDGCHC 3 cut(s) 23, 313, 786
Mly113I GGCGCC 1 cut(s) 531
MmeI TCCRAC 1 cut(s) 651
MroI TCCGGA 1 cut(s) 194
MroNI GCCGGC 1 cut(s) 439
MspA1I CMGCKG 2 cut(s) 333, 691
MspI CCGG 9 cut(s) 83, 195, 245, 272, 286, 370, 440, 498, 723
MspR9I CCNGG 7 cut(s) 232, 246, 286, 287, 370, 528, 572
MvaI CCWGG 3 cut(s) 232, 528, 572
MwoI GCNNNNNNNGC 8 cut(s) 52, 162, 336, 537, 567, 700, 709, 712
NaeI GCCGGC 1 cut(s) 441
NarI GGCGCC 1 cut(s) 531
NciI CCSGG 4 cut(s) 246, 286, 287, 370
NdeII GATC 6 cut(s) 94, 118, 276, 483, 621, 769
NgoMIV GCCGGC 1 cut(s) 439
NlaIII CATG 2 cut(s) 101, 817
NlaIV GGNNCC 4 cut(s) 361, 532, 597, 785
NmuCI GTSAC 4 cut(s) 181, 415, 424, 460
NspI RCATGY 1 cut(s) 817
PagI TCATGA 1 cut(s) 97
PcsI WCGNNNNNNNCGW 1 cut(s) 477
PdiI GCCGGC 1 cut(s) 441
PfeI GAWTC 2 cut(s) 86, 697
PflMI CCANNNNNTGG 1 cut(s) 577
PluTI GGCGCC 1 cut(s) 534
PpuMI RGGWCCY 2 cut(s) 596, 614
Psp124BI GAGCTC 1 cut(s) 313
Psp5II RGGWCCY 2 cut(s) 596, 614
Psp6I CCWGG 3 cut(s) 230, 526, 570
PspEI GGTNACC 1 cut(s) 415
PspFI CCCAGC 2 cut(s) 5, 443
PspGI CCWGG 3 cut(s) 230, 526, 570
PspN4I GGNNCC 4 cut(s) 361, 532, 597, 785
PspPI GGNCC 5 cut(s) 228, 261, 568, 596, 614
PspPPI RGGWCCY 2 cut(s) 596, 614
PstI CTGCAG 1 cut(s) 696
PstNI CAGNNNCTG 2 cut(s) 336, 617
PsuI RGATCY 2 cut(s) 483, 769
PvuII CAGCTG 1 cut(s) 691
RsaI GTAC 1 cut(s) 217
RsaNI GTAC 1 cut(s) 216
SacI GAGCTC 1 cut(s) 313
Sau3AI GATC 6 cut(s) 94, 118, 276, 483, 621, 769
Sau96I GGNCC 5 cut(s) 228, 261, 568, 596, 614
ScrFI CCNGG 7 cut(s) 232, 246, 286, 287, 370, 528, 572
SduI GDGCHC 3 cut(s) 23, 313, 786
SfaNI GCATC 2 cut(s) 35, 617
SfcI CTRYAG 1 cut(s) 692
SfoI GGCGCC 1 cut(s) 532
SinI GGWCC 3 cut(s) 228, 596, 614
SmaI CCCGGG 1 cut(s) 287
SmlI CTYRAG 1 cut(s) 397
SmoI CTYRAG 1 cut(s) 397
SspDI GGCGCC 1 cut(s) 530
SstI GAGCTC 1 cut(s) 313
StyD4I CCNGG 7 cut(s) 230, 244, 284, 285, 368, 526, 570
StyI CCWWGG 1 cut(s) 166
TaiI ACGT 3 cut(s) 141, 426, 651
TaqI TCGA 3 cut(s) 223, 348, 480
TauI GCSGC 7 cut(s) 336, 379, 514, 517, 706, 715, 859
TfiI GAWTC 2 cut(s) 86, 697
TscAI CASTG 1 cut(s) 462
TseFI GTSAC 4 cut(s) 181, 415, 424, 460
TseI GCWGC 6 cut(s) 46, 330, 336, 379, 688, 691
Tsp45I GTSAC 4 cut(s) 181, 415, 424, 460
TspDTI ATGAA 1 cut(s) 29
TspGWI ACGGA 1 cut(s) 762
TspMI CCCGGG 1 cut(s) 285
TspRI CASTG 1 cut(s) 462
Van91I CCANNNNNTGG 1 cut(s) 577
VpaK11BI GGWCC 3 cut(s) 228, 596, 614
XceI RCATGY 1 cut(s) 817
XmaI CCCGGG 1 cut(s) 285
ZraI GACGTC 1 cut(s) 139
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.