FvH4_7g11040

Holliday junction resolvase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0016704
Physical Location & Seq
Forward (+)
10333585 .. 10340009
6425 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g11040.t1

Sequence Viewer

Length: 1047 bp
ATGATCCTCACTCTTACTATTACCCCTCCTCCTATGACCCAAACCACTCCTACCAATATTACCAAGATTACCCCCACTTCTATCAAGAACCCACTTCCATTCACCCTCCCGGCGTCCCAATTCCGGCGCCGGATTCCGAGACGACCCATTTGCAGAATGCCTATTATGGACATGGGGTTGTGGAGAATCAGCATCAGCCTATTGATTCGGGTTCTGGGTCGGTTCAGGCACCGGCGAATGTGGCGGTGGCGCAGGTGGCATCGCAACCGCAGGCCTATCCTCATCATCGTTACACTTTTGGGTTTTGGGTCCCCAGAAATGTCTACTCATTCACTCGGAGCAGCTCCACCGTTTCAAACCCAATTCCACCTTCCGGTCAAAAACGCCGCCGTTCCGAGATTCAAAACCGCCCCCAACTCTCCTCAACTCTCCCTCACCCAAATTCTTAAACCCCGCCACGCAATAAGGGCAGTCTCCATCGATGAAATTCCCCCAAATGCCCTCCGCCGGAAGCGCGACTCCAACTGGAGAGGCGGCTTCAGCGTAGGGGTAGACTTGGGATTGTCCCGCACTGGCCTCGCCCTCAGCAAAGGCTTCTCCGTTCGTCCCCTCACCGTGTTGAATTTGAGAGGGCAAAAGCTTGAGGTTCAGCTGCTGGAGATAGCAAAGCAACAGGAGGCAGATGAGTTTATAATCGGGCTTCCGAGATCGAGTGATGGGAAGGAGACACCTCAGTCTAACAAAGTTCGGAGTGTCGCGGGGAGGCTTGCTGCTAGTGCTGCTGAGAGGGGTTGGAGAGTATACCTGCAGGATGAAAATGGGACATCCATCGAAGCCATGGATCGAATGATTAACATGGGCCTCAGCAGGTCAGATCGTCAAAGCCAAATTGATGCCTACGCTGCCATGATGGTGCTGGAGCGATATTTTTCCATGTCAGGTGAAGGTATTGAGCTTGTACTGCCCAAGAATTTGGATCTGCAAGAAAGACTTAGAAGAGGTCCACCGAAAGACGTTGATTATTTCTCTGAAGACGATGAGGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RuvX

Protein Analysis

349

Amino Acids

39.55

Weight (kDa)

10.99

Isoelectric Point (pI)

65.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RuvX PF03652 182 - 311 3.4e-25 Holliday junction resolvase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016704)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G12244
fragaria_vesca FvH4_7g11040
malus_domestica MD07G1114500.v1.1
prunus_persica Prupe.2G137100_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0349031
rosa_laevigata RLG00000028610
rosa_multiflora Rmu_sc0038026.1_g000002
rosa_roxburghii Rroxscaffold_4G00306220
rosa_rugosa Rorug01G0199600
rosa_samantha Rh1AG217200 Rh1BG182700 Rh1CG201600 Rh1DG212700
rosa_wichuraiana Rw1G018470

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 692
AarI CACCTGC 1 cut(s) 243
AasI GACNNNNNNGTC 1 cut(s) 733
Acc36I ACCTGC 3 cut(s) 243, 813, 858
AccB1I GGYRCC 2 cut(s) 126, 228
AccI GTMKAC 3 cut(s) 323, 552, 801
AccII CGCG 2 cut(s) 516, 758
AciI CCGC 9 cut(s) 244, 268, 387, 408, 454, 505, 534, 568, 758
AclWI GGATC 2 cut(s) 849, 984
AcsI RAATTY 4 cut(s) 441, 486, 622, 970
AcuI CTGAAG 1 cut(s) 523
AcyI GRCGYC 2 cut(s) 113, 127
AfaI GTAC 1 cut(s) 960
AfiI CCNNNNNNNGG 3 cut(s) 123, 373, 507
AgsI TTSAA 3 cut(s) 356, 403, 622
AjuI GAANNNNNNNTTGG 2 cut(s) 354, 386
AluBI AGCT 4 cut(s) 344, 640, 652, 955
AluI AGCT 4 cut(s) 344, 640, 652, 955
Alw26I GTCTC 3 cut(s) 133, 478, 719
AlwI GGATC 2 cut(s) 849, 984
AlwNI CAGNNNCTG 1 cut(s) 655
AoxI GGCC 3 cut(s) 272, 574, 859
ApeKI GCWGC 5 cut(s) 341, 652, 770, 779, 902
ApoI RAATTY 4 cut(s) 441, 486, 622, 970
ArsI GACNNNNNNTTYG 2 cut(s) 132, 164
AspLEI GCGC 3 cut(s) 129, 252, 516
AspS9I GGNCC 3 cut(s) 309, 859, 1001
AsuC2I CCSGG 1 cut(s) 110
AsuHPI GGTGA 4 cut(s) 94, 427, 604, 953
AvaII GGWCC 2 cut(s) 309, 1001
BanI GGYRCC 2 cut(s) 126, 228
BbsI GAAGAC 1 cut(s) 1038
BbvCI CCTCAGC 2 cut(s) 584, 863
BbvI GCAGC 5 cut(s) 353, 639, 757, 766, 889
BccI CCATC 4 cut(s) 485, 710, 836, 904
BceAI ACGGC 1 cut(s) 374
BcgI CGANNNNNNTGC 4 cut(s) 132, 166, 559, 593
BcnI CCSGG 1 cut(s) 110
BcoDI GTCTC 3 cut(s) 133, 478, 719
BfaI CTAG 1 cut(s) 774
BfmI CTRYAG 1 cut(s) 806
BfoI RGCGCY 1 cut(s) 130
BfuAI ACCTGC 3 cut(s) 243, 813, 858
BisI GCNGC 7 cut(s) 342, 387, 535, 653, 771, 780, 903
BlsI GCNGC 7 cut(s) 343, 388, 536, 654, 772, 781, 904
Bme1390I CCNGG 1 cut(s) 110
Bme18I GGWCC 2 cut(s) 309, 1001
BmgT120I GGNCC 3 cut(s) 309, 859, 1001
BmiI GGNNCC 4 cut(s) 128, 230, 310, 311
BmrFI CCNGG 1 cut(s) 110
BmsI GCATC 3 cut(s) 201, 268, 883
BpiI GAAGAC 1 cut(s) 1038
BpmI CTGGAG 3 cut(s) 547, 677, 938
Bpu10I CCTNAGC 2 cut(s) 584, 863
BpuEI CTTGAG 1 cut(s) 662
BpuMI CCSGG 1 cut(s) 110
Bsa29I ATCGAT 1 cut(s) 480
BsaHI GRCGYC 2 cut(s) 113, 127
BsaJI CCNNGG 1 cut(s) 837
BsaWI WCCGGW 1 cut(s) 373
BsaXI ACNNNNNCTCC 2 cut(s) 13, 43
Bsc4I CCNNNNNNNGG 3 cut(s) 123, 373, 507
Bse118I RCCGGY 1 cut(s) 231
Bse1I ACTGG 2 cut(s) 530, 577
BseCI ATCGAT 1 cut(s) 480
BseDI CCNNGG 1 cut(s) 837
BseGI GGATG 2 cut(s) 817, 824
BseLI CCNNNNNNNGG 3 cut(s) 123, 373, 507
BseMII CTCAG 4 cut(s) 598, 746, 774, 877
BseNI ACTGG 2 cut(s) 530, 577
BseRI GAGGAG 2 cut(s) 18, 411
BseXI GCAGC 5 cut(s) 353, 639, 757, 766, 889
Bsh1236I CGCG 2 cut(s) 516, 758
BshFI GGCC 3 cut(s) 274, 576, 861
BshNI GGYRCC 2 cut(s) 126, 228
BshVI ATCGAT 1 cut(s) 480
BsiSI CCGG 6 cut(s) 110, 124, 130, 232, 374, 508
BslFI GGGAC 5 cut(s) 100, 295, 550, 591, 835
BslI CCNNNNNNNGG 3 cut(s) 123, 373, 507
BsmAI GTCTC 3 cut(s) 133, 478, 719
BsmBI CGTCTC 1 cut(s) 133
BsmFI GGGAC 5 cut(s) 100, 295, 550, 591, 835
BsmI GAATGC 1 cut(s) 162
BsnI GGCC 3 cut(s) 274, 576, 861
Bsp143I GATC 5 cut(s) 3, 707, 841, 874, 976
Bsp19I CCATGG 1 cut(s) 837
BspACI CCGC 9 cut(s) 244, 268, 387, 408, 454, 505, 534, 568, 758
BspANI GGCC 3 cut(s) 274, 576, 861
BspCNI CTCAG 4 cut(s) 597, 745, 775, 876
BspDI ATCGAT 1 cut(s) 480
BspFNI CGCG 2 cut(s) 516, 758
BspLI GGNNCC 4 cut(s) 128, 230, 310, 311
BspMAI CTGCAG 1 cut(s) 810
BspMI ACCTGC 3 cut(s) 243, 813, 858
BspPI GGATC 2 cut(s) 849, 984
BspT107I GGYRCC 2 cut(s) 126, 228
BsrFI RCCGGY 1 cut(s) 231
BsrI ACTGG 2 cut(s) 530, 577
BssAI RCCGGY 1 cut(s) 231
BssECI CCNNGG 1 cut(s) 837
BssMI GATC 5 cut(s) 3, 707, 841, 874, 976
BssNAI GTATAC 1 cut(s) 802
BssNI GRCGYC 2 cut(s) 113, 127
BssT1I CCWWGG 1 cut(s) 837
Bst1107I GTATAC 1 cut(s) 802
Bst4CI ACNGT 2 cut(s) 351, 616
Bst6I CTCTTC 1 cut(s) 991
BstACI GRCGYC 2 cut(s) 113, 127
BstC8I GCNNGC 2 cut(s) 272, 768
BstDEI CTNAG 5 cut(s) 584, 732, 783, 863, 992
BstDSI CCRYGG 1 cut(s) 837
BstF5I GGATG 2 cut(s) 817, 824
BstFNI CGCG 2 cut(s) 516, 758
BstH2I RGCGCY 1 cut(s) 130
BstHHI GCGC 3 cut(s) 129, 252, 516
BstKTI GATC 5 cut(s) 6, 710, 844, 877, 979
BstMAI GTCTC 3 cut(s) 133, 478, 719
BstMBI GATC 5 cut(s) 3, 707, 841, 874, 976
BstMWI GCNNNNNNNGC 9 cut(s) 241, 256, 467, 513, 540, 776, 779, 902, 961
BstSCI CCNGG 1 cut(s) 108
BstSFI CTRYAG 1 cut(s) 806
BstUI CGCG 2 cut(s) 516, 758
BstV1I GCAGC 5 cut(s) 353, 639, 757, 766, 889
BstV2I GAAGAC 1 cut(s) 1038
BstX2I RGATCY 1 cut(s) 976
BstXI CCANNNNNNTGG 1 cut(s) 973
BstYI RGATCY 1 cut(s) 976
BstZ17I GTATAC 1 cut(s) 802
Bsu15I ATCGAT 1 cut(s) 480
BsuRI GGCC 3 cut(s) 274, 576, 861
BsuTUI ATCGAT 1 cut(s) 480
BtgI CCRYGG 1 cut(s) 837
BtgZI GCGATG 1 cut(s) 245
BtsCI GGATG 2 cut(s) 817, 824
BtsIMutI CAGTG 1 cut(s) 570
BveI ACCTGC 3 cut(s) 243, 813, 858
Cac8I GCNNGC 2 cut(s) 272, 768
CaiI CAGNNNCTG 1 cut(s) 655
CfoI GCGC 3 cut(s) 129, 252, 516
Cfr10I RCCGGY 1 cut(s) 231
Cfr13I GGNCC 3 cut(s) 309, 859, 1001
ClaI ATCGAT 1 cut(s) 480
CseI GACGC 1 cut(s) 102
Csp6I GTAC 1 cut(s) 959
CviAII CATG 5 cut(s) 172, 838, 856, 907, 934
CviQI GTAC 1 cut(s) 959
DdeI CTNAG 5 cut(s) 584, 732, 783, 863, 992
DinI GGCGCC 1 cut(s) 128
DpnI GATC 5 cut(s) 5, 709, 843, 876, 978
DpnII GATC 5 cut(s) 3, 707, 841, 874, 976
DrdI GACNNNNNNGTC 1 cut(s) 733
DseDI GACNNNNNNGTC 1 cut(s) 733
Eam1104I CTCTTC 1 cut(s) 991
EarI CTCTTC 1 cut(s) 991
EciI GGCGGA 1 cut(s) 494
Eco130I CCWWGG 1 cut(s) 837
Eco147I AGGCCT 1 cut(s) 274
Eco47I GGWCC 2 cut(s) 309, 1001
Eco57I CTGAAG 1 cut(s) 523
EcoO109I RGGNCCY 1 cut(s) 309
EcoT14I CCWWGG 1 cut(s) 837
EgeI GGCGCC 1 cut(s) 128
EheI GGCGCC 1 cut(s) 128
ErhI CCWWGG 1 cut(s) 837
Esp3I CGTCTC 1 cut(s) 133
FaeI CATG 5 cut(s) 175, 841, 859, 910, 937
FaiI YATR 9 cut(s) 35, 167, 173, 692, 802, 839, 857, 908, 935
FalI AAGNNNNNCTT 2 cut(s) 975, 1007
FaqI GGGAC 5 cut(s) 100, 295, 550, 591, 835
FatI CATG 5 cut(s) 171, 837, 855, 906, 933
FauI CCCGC 3 cut(s) 461, 575, 751
FblI GTMKAC 3 cut(s) 323, 552, 801
Fnu4HI GCNGC 7 cut(s) 342, 387, 535, 653, 771, 780, 903
FokI GGATG 2 cut(s) 811, 824
Fsp4HI GCNGC 7 cut(s) 342, 387, 535, 653, 771, 780, 903
FspBI CTAG 1 cut(s) 774
GlaI GCGC 3 cut(s) 128, 251, 515
GluI GCNGC 7 cut(s) 342, 387, 535, 653, 771, 780, 903
GsuI CTGGAG 3 cut(s) 547, 677, 938
HaeII RGCGCY 1 cut(s) 130
HaeIII GGCC 3 cut(s) 274, 576, 861
HapII CCGG 6 cut(s) 110, 124, 130, 232, 374, 508
HgaI GACGC 1 cut(s) 102
HhaI GCGC 3 cut(s) 129, 252, 516
Hin1I GRCGYC 2 cut(s) 113, 127
Hin1II CATG 5 cut(s) 175, 841, 859, 910, 937
Hin6I GCGC 3 cut(s) 127, 250, 514
HinP1I GCGC 3 cut(s) 127, 250, 514
HindIII AAGCTT 1 cut(s) 638
HinfI GANTC 5 cut(s) 133, 186, 205, 399, 518
HpaII CCGG 6 cut(s) 110, 124, 130, 232, 374, 508
HphI GGTGA 4 cut(s) 94, 427, 604, 953
Hpy166II GTNNAC 4 cut(s) 324, 553, 802, 1004
Hpy188I TCNGA 7 cut(s) 138, 338, 396, 705, 750, 874, 1030
Hpy188III TCNNGA 1 cut(s) 85
Hpy8I GTNNAC 4 cut(s) 324, 553, 802, 1004
HpyAV CCTTC 3 cut(s) 380, 715, 938
HpyCH4III ACNGT 2 cut(s) 351, 616
HpyCH4IV ACGT 1 cut(s) 1014
HpyCH4V TGCA 3 cut(s) 153, 808, 982
HpyF10VI GCNNNNNNNGC 9 cut(s) 241, 256, 467, 513, 540, 776, 779, 902, 961
HpyF3I CTNAG 5 cut(s) 584, 732, 783, 863, 992
HpySE526I ACGT 1 cut(s) 1014
Hsp92I GRCGYC 2 cut(s) 113, 127
Hsp92II CATG 5 cut(s) 175, 841, 859, 910, 937
HspAI GCGC 3 cut(s) 127, 250, 514
KasI GGCGCC 1 cut(s) 126
KflI GGGWCCC 1 cut(s) 309
Kzo9I GATC 5 cut(s) 3, 707, 841, 874, 976
LmnI GCTCC 3 cut(s) 338, 349, 919
Lsp1109I GCAGC 5 cut(s) 353, 639, 757, 766, 889
LweI GCATC 3 cut(s) 201, 268, 883
MaeI CTAG 1 cut(s) 774
MaeII ACGT 1 cut(s) 1014
MaeIII GTNAC 1 cut(s) 289
MalI GATC 5 cut(s) 5, 709, 843, 876, 978
MboI GATC 5 cut(s) 3, 707, 841, 874, 976
MboII GAAGA 2 cut(s) 1008, 1043
MflI RGATCY 1 cut(s) 976
MluCI AATT 7 cut(s) 119, 362, 441, 486, 622, 888, 970
Mly113I GGCGCC 1 cut(s) 127
MlyI GAGTC 1 cut(s) 512
MmeI TCCRAC 2 cut(s) 546, 773
MseI TTAA 2 cut(s) 447, 852
MslI CAYNNNNRTG 1 cut(s) 911
MspA1I CMGCKG 1 cut(s) 652
MspI CCGG 6 cut(s) 110, 124, 130, 232, 374, 508
MspR9I CCNGG 1 cut(s) 110
Mva1269I GAATGC 1 cut(s) 162
MvnI CGCG 2 cut(s) 516, 758
MwoI GCNNNNNNNGC 9 cut(s) 241, 256, 467, 513, 540, 776, 779, 902, 961
NarI GGCGCC 1 cut(s) 127
NciI CCSGG 1 cut(s) 110
NcoI CCATGG 1 cut(s) 837
NdeII GATC 5 cut(s) 3, 707, 841, 874, 976
NlaIII CATG 5 cut(s) 175, 841, 859, 910, 937
NlaIV GGNNCC 4 cut(s) 128, 230, 310, 311
PaqCI CACCTGC 1 cut(s) 243
PceI AGGCCT 1 cut(s) 274
PctI GAATGC 1 cut(s) 162
PfeI GAWTC 4 cut(s) 133, 186, 205, 399
PkrI GCNGC 7 cut(s) 343, 388, 536, 654, 772, 781, 904
PleI GAGTC 1 cut(s) 512
PluTI GGCGCC 1 cut(s) 130
PpsI GAGTC 1 cut(s) 512
PpuMI RGGWCCY 1 cut(s) 309
PsiI TTATAA 1 cut(s) 692
Psp5II RGGWCCY 1 cut(s) 309
PspN4I GGNNCC 4 cut(s) 128, 230, 310, 311
PspPI GGNCC 3 cut(s) 309, 859, 1001
PspPPI RGGWCCY 1 cut(s) 309
PstI CTGCAG 1 cut(s) 810
PstNI CAGNNNCTG 1 cut(s) 655
PsuI RGATCY 1 cut(s) 976
PvuII CAGCTG 1 cut(s) 652
RsaI GTAC 1 cut(s) 960
RsaNI GTAC 1 cut(s) 959
RseI CAYNNNNRTG 1 cut(s) 911
SaqAI TTAA 2 cut(s) 447, 852
SatI GCNGC 7 cut(s) 342, 387, 535, 653, 771, 780, 903
Sau3AI GATC 5 cut(s) 3, 707, 841, 874, 976
Sau96I GGNCC 3 cut(s) 309, 859, 1001
SbfI CCTGCAGG 1 cut(s) 810
SchI GAGTC 1 cut(s) 512
ScrFI CCNGG 1 cut(s) 110
SdaI CCTGCAGG 1 cut(s) 810
SfaNI GCATC 3 cut(s) 201, 268, 883
SfcI CTRYAG 1 cut(s) 806
SfoI GGCGCC 1 cut(s) 128
SgrAI CRCCGGYG 1 cut(s) 231
SinI GGWCC 2 cut(s) 309, 1001
SmiMI CAYNNNNRTG 1 cut(s) 911
SmlI CTYRAG 1 cut(s) 641
SmoI CTYRAG 1 cut(s) 641
Sse8387I CCTGCAGG 1 cut(s) 810
Sse9I AATT 7 cut(s) 119, 362, 441, 486, 622, 888, 970
SseBI AGGCCT 1 cut(s) 274
SsiI CCGC 9 cut(s) 244, 268, 387, 408, 454, 505, 534, 568, 758
SspDI GGCGCC 1 cut(s) 126
SspI AATATT 1 cut(s) 58
SspMI CTAG 1 cut(s) 774
StuI AGGCCT 1 cut(s) 274
StyD4I CCNGG 1 cut(s) 108
StyI CCWWGG 1 cut(s) 837
TaaI ACNGT 2 cut(s) 351, 616
TaiI ACGT 1 cut(s) 1017
TaqI TCGA 4 cut(s) 480, 710, 831, 844
TasI AATT 7 cut(s) 119, 362, 441, 486, 622, 888, 970
TatI WGTACW 1 cut(s) 958
TauI GCSGC 2 cut(s) 389, 537
TfiI GAWTC 4 cut(s) 133, 186, 205, 399
Tru1I TTAA 2 cut(s) 447, 852
Tru9I TTAA 2 cut(s) 447, 852
TscAI CASTG 1 cut(s) 577
TseI GCWGC 5 cut(s) 341, 652, 770, 779, 902
TspDTI ATGAA 2 cut(s) 498, 828
TspGWI ACGGA 1 cut(s) 589
TspRI CASTG 1 cut(s) 577
VpaK11BI GGWCC 2 cut(s) 309, 1001
XapI RAATTY 4 cut(s) 441, 486, 622, 970
XcmI CCANNNNNNNNNTGG 2 cut(s) 835, 913
XmiI GTMKAC 3 cut(s) 323, 552, 801
XspI CTAG 1 cut(s) 774
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.