Rmu_sc0038026.1_g000002

Holliday junction resolvase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0038026.1
OG0016704
Physical Location & Seq
Forward (+)
1918 .. 2238
321 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0038026.1_g000002.1.cds

Sequence Viewer

Length: 321 bp
atgtctcgtcacccactcggagctgctctcccggcgcacaccgaactcctcattccgatcaaaaacgccgccgttctgaacctcaaaaccgcccccacctctcctcaactctctctcacccaaacccgcaaaccctgccctgcaataagggcagtctccatcgatgaaattcccccaaatgccctccgccggaagcgcgactccaactggagaggaggctttagcgtaggggtagacttgggattgtcccgcaccggcctcgccctcagcaaaggcttctccgtccgtcccctcaccgtaattttcccgccaatttcttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RuvX

Protein Analysis

106

Amino Acids

11.34

Weight (kDa)

11.5

Isoelectric Point (pI)

46.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016704)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G12244
fragaria_vesca FvH4_7g11040
malus_domestica MD07G1114500.v1.1
prunus_persica Prupe.2G137100_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0349031
rosa_laevigata RLG00000028610
rosa_multiflora Rmu_sc0038026.1_g000002
rosa_roxburghii Rroxscaffold_4G00306220
rosa_rugosa Rorug01G0199600
rosa_samantha Rh1AG217200 Rh1BG182700 Rh1CG201600 Rh1DG212700
rosa_wichuraiana Rw1G018470

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 234
AccII CGCG 1 cut(s) 198
AciI CCGC 6 cut(s) 69, 90, 127, 187, 250, 308
AcsI RAATTY 1 cut(s) 168
AfiI CCNNNNNNNGG 1 cut(s) 189
AluBI AGCT 1 cut(s) 23
AluI AGCT 1 cut(s) 23
Alw26I GTCTC 2 cut(s) 9, 160
AoxI GGCC 1 cut(s) 256
ApeKI GCWGC 1 cut(s) 23
ApoI RAATTY 1 cut(s) 168
AspLEI GCGC 2 cut(s) 37, 198
AsuC2I CCSGG 1 cut(s) 32
AsuHPI GGTGA 2 cut(s) 109, 286
BbvCI CCTCAGC 1 cut(s) 266
BbvI GCAGC 1 cut(s) 10
BccI CCATC 1 cut(s) 167
BceAI ACGGC 1 cut(s) 56
BcgI CGANNNNNNTGC 2 cut(s) 241, 275
BcnI CCSGG 1 cut(s) 32
BcoDI GTCTC 2 cut(s) 9, 160
BisI GCNGC 2 cut(s) 24, 69
BlsI GCNGC 2 cut(s) 25, 70
Bme1390I CCNGG 1 cut(s) 32
BmrFI CCNGG 1 cut(s) 32
BplI GAGNNNNNCTC 2 cut(s) 12, 44
BpmI CTGGAG 1 cut(s) 229
Bpu10I CCTNAGC 1 cut(s) 266
BpuMI CCSGG 1 cut(s) 32
Bsa29I ATCGAT 1 cut(s) 162
Bsc4I CCNNNNNNNGG 1 cut(s) 189
Bse118I RCCGGY 1 cut(s) 254
Bse1I ACTGG 1 cut(s) 212
BseCI ATCGAT 1 cut(s) 162
BseLI CCNNNNNNNGG 1 cut(s) 189
BseMII CTCAG 1 cut(s) 280
BseNI ACTGG 1 cut(s) 212
BseRI GAGGAG 3 cut(s) 38, 93, 228
BseXI GCAGC 1 cut(s) 10
Bsh1236I CGCG 1 cut(s) 198
BshFI GGCC 1 cut(s) 258
BshVI ATCGAT 1 cut(s) 162
BsiSI CCGG 3 cut(s) 32, 190, 255
BslFI GGGAC 2 cut(s) 232, 273
BslI CCNNNNNNNGG 1 cut(s) 189
BsmAI GTCTC 2 cut(s) 9, 160
BsmFI GGGAC 2 cut(s) 232, 273
BsnI GGCC 1 cut(s) 258
Bsp143I GATC 1 cut(s) 57
BspACI CCGC 6 cut(s) 69, 90, 127, 187, 250, 308
BspANI GGCC 1 cut(s) 258
BspCNI CTCAG 1 cut(s) 279
BspDI ATCGAT 1 cut(s) 162
BspFNI CGCG 1 cut(s) 198
BsrFI RCCGGY 1 cut(s) 254
BsrI ACTGG 1 cut(s) 212
BssAI RCCGGY 1 cut(s) 254
BssMI GATC 1 cut(s) 57
Bst4CI ACNGT 1 cut(s) 298
BstAPI GCANNNNNTGC 1 cut(s) 135
BstDEI CTNAG 1 cut(s) 266
BstFNI CGCG 1 cut(s) 198
BstHHI GCGC 2 cut(s) 37, 198
BstKTI GATC 1 cut(s) 60
BstMAI GTCTC 2 cut(s) 9, 160
BstMBI GATC 1 cut(s) 57
BstMWI GCNNNNNNNGC 4 cut(s) 32, 135, 149, 195
BstSCI CCNGG 1 cut(s) 30
BstUI CGCG 1 cut(s) 198
BstV1I GCAGC 1 cut(s) 10
Bsu15I ATCGAT 1 cut(s) 162
BsuRI GGCC 1 cut(s) 258
BsuTUI ATCGAT 1 cut(s) 162
CfoI GCGC 2 cut(s) 37, 198
Cfr10I RCCGGY 1 cut(s) 254
ClaI ATCGAT 1 cut(s) 162
CviJI RGCY 4 cut(s) 23, 219, 258, 276
CviKI_1 RGCY 4 cut(s) 23, 219, 258, 276
DdeI CTNAG 1 cut(s) 266
DpnI GATC 1 cut(s) 59
DpnII GATC 1 cut(s) 57
EciI GGCGGA 1 cut(s) 176
FaqI GGGAC 2 cut(s) 232, 273
FauI CCCGC 3 cut(s) 134, 257, 315
FblI GTMKAC 1 cut(s) 234
Fnu4HI GCNGC 2 cut(s) 24, 69
Fsp4HI GCNGC 2 cut(s) 24, 69
GlaI GCGC 2 cut(s) 36, 197
GluI GCNGC 2 cut(s) 24, 69
GsuI CTGGAG 1 cut(s) 229
HaeIII GGCC 1 cut(s) 258
HapII CCGG 3 cut(s) 32, 190, 255
HhaI GCGC 2 cut(s) 37, 198
Hin6I GCGC 2 cut(s) 35, 196
HinP1I GCGC 2 cut(s) 35, 196
HinfI GANTC 1 cut(s) 200
HpaII CCGG 3 cut(s) 32, 190, 255
HphI GGTGA 2 cut(s) 109, 286
Hpy166II GTNNAC 1 cut(s) 235
Hpy188I TCNGA 3 cut(s) 20, 57, 78
Hpy8I GTNNAC 1 cut(s) 235
HpyCH4III ACNGT 1 cut(s) 298
HpyCH4V TGCA 1 cut(s) 143
HpyF10VI GCNNNNNNNGC 4 cut(s) 32, 135, 149, 195
HpyF3I CTNAG 1 cut(s) 266
HspAI GCGC 2 cut(s) 35, 196
Kzo9I GATC 1 cut(s) 57
LmnI GCTCC 1 cut(s) 20
LpnPI CCDG 6 cut(s) 45, 148, 153, 193, 203, 268
Lsp1109I GCAGC 1 cut(s) 10
MaeIII GTNAC 1 cut(s) 8
MalI GATC 1 cut(s) 59
MboI GATC 1 cut(s) 57
MluCI AATT 3 cut(s) 168, 300, 312
MlyI GAGTC 1 cut(s) 194
MmeI TCCRAC 1 cut(s) 228
MseI TTAA 1 cut(s) 319
MspI CCGG 3 cut(s) 32, 190, 255
MspR9I CCNGG 1 cut(s) 32
MvnI CGCG 1 cut(s) 198
MwoI GCNNNNNNNGC 4 cut(s) 32, 135, 149, 195
NciI CCSGG 1 cut(s) 32
NdeII GATC 1 cut(s) 57
NmuCI GTSAC 1 cut(s) 8
PkrI GCNGC 2 cut(s) 25, 70
PleI GAGTC 1 cut(s) 194
PpsI GAGTC 1 cut(s) 194
SaqAI TTAA 1 cut(s) 319
SatI GCNGC 2 cut(s) 24, 69
Sau3AI GATC 1 cut(s) 57
SchI GAGTC 1 cut(s) 194
ScrFI CCNGG 1 cut(s) 32
SetI ASST 3 cut(s) 25, 84, 101
Sse9I AATT 3 cut(s) 168, 300, 312
SsiI CCGC 6 cut(s) 69, 90, 127, 187, 250, 308
StyD4I CCNGG 1 cut(s) 30
TaaI ACNGT 1 cut(s) 298
TaqI TCGA 1 cut(s) 162
TasI AATT 3 cut(s) 168, 300, 312
TauI GCSGC 1 cut(s) 71
Tru1I TTAA 1 cut(s) 319
Tru9I TTAA 1 cut(s) 319
TseFI GTSAC 1 cut(s) 8
TseI GCWGC 1 cut(s) 23
Tsp45I GTSAC 1 cut(s) 8
TspDTI ATGAA 1 cut(s) 180
TspGWI ACGGA 2 cut(s) 271, 275
XapI RAATTY 1 cut(s) 168
XmiI GTMKAC 1 cut(s) 234
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.