Prupe.2G137100_v2.0.a1

Holliday junction resolvase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
OG0016704
Physical Location & Seq
Forward (+)
19459329 .. 19461468
2140 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G137100.1

Sequence Viewer

Length: 726 bp
ATGTTTTGTCAGCGACTGGCAGCTCTACCGGCACAAACCGACCTCTTCCTTCCCTTCCCAATCGGCACCGTTCCCAAAGTCCGAAATGCCCCCACGTCCATTCAACTCCCTCTCACCAAAAACCGTAAAAGCGGCCCTCGAATAAGTGCAATCTCCACAGATGAAATTCCTCCAAATGCCCTCCGCCGGAAGCGTGACCCGAACTGGAGAGGCGGGTTTAGCGTAGGGGTAGATTTAGGAATGTCGCGTACCGGCCTCGCTCTTAGCAAAGGGTTCAACTTTCGTCCTCTCACCGTGTTGAGTTTGAGAGGGCAGAAGCTTGAGGATCAACTCCTTGAGATTGCAAAGCAGCAGGAGGCAGATGAGTTTATAGTCGGACTTCCGAAATCGAGTGATGGGAAAGAGACGCCTCAGTCCAACAAAGTTCGTAGCGTTGCTGGGAGGCTTGCTGTTAGTGCTGCTCAGAGGGGTTGGAGGGTATACCTGCAGGATGAAAACGGGACGTCCATCGAAGCCATGGATCGCATGATTAACGTGGGCCTCGGCAAGTCTGATCGGCAAAGCAAAGTCGATGCCTACGCTGCCGTGATGGTGCTGGAGAGATATTTTTCCATGTCAGGACAGGGCACTGAGCTTGTGGTACCCAAGAATTTGGATCTGCAGGACAAACTTCGAAGAGGTCCTCCTAAAGATATTGACTTTTACCCCGAAGATTATGAGGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RuvX

Protein Analysis

242

Amino Acids

26.73

Weight (kDa)

9.43

Isoelectric Point (pI)

47.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016704)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G12244
fragaria_vesca FvH4_7g11040
malus_domestica MD07G1114500.v1.1
prunus_persica Prupe.2G137100_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0349031
rosa_laevigata RLG00000028610
rosa_multiflora Rmu_sc0038026.1_g000002
rosa_roxburghii Rroxscaffold_4G00306220
rosa_rugosa Rorug01G0199600
rosa_samantha Rh1AG217200 Rh1BG182700 Rh1CG201600 Rh1DG212700
rosa_wichuraiana Rw1G018470

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 412
AatII GACGTC 1 cut(s) 506
Acc36I ACCTGC 1 cut(s) 492
Acc65I GGTACC 1 cut(s) 640
AccB1I GGYRCC 2 cut(s) 65, 640
AccI GTMKAC 1 cut(s) 480
AccII CGCG 1 cut(s) 247
AciI CCGC 3 cut(s) 132, 184, 213
AclWI GGATC 3 cut(s) 333, 528, 663
AcsI RAATTY 2 cut(s) 165, 649
AcyI GRCGYC 2 cut(s) 407, 503
AfaI GTAC 2 cut(s) 250, 642
AfiI CCNNNNNNNGG 1 cut(s) 186
AgsI TTSAA 2 cut(s) 104, 277
AjiI CACGTC 1 cut(s) 96
AluBI AGCT 3 cut(s) 23, 319, 634
AluI AGCT 3 cut(s) 23, 319, 634
Alw26I GTCTC 1 cut(s) 398
AlwI GGATC 3 cut(s) 333, 528, 663
AlwNI CAGNNNCTG 1 cut(s) 16
AoxI GGCC 3 cut(s) 133, 253, 538
ApeKI GCWGC 4 cut(s) 20, 349, 458, 581
ApoI RAATTY 2 cut(s) 165, 649
Asp718I GGTACC 1 cut(s) 640
AspS9I GGNCC 3 cut(s) 134, 538, 680
AsuHPI GGTGA 2 cut(s) 106, 283
AsuII TTCGAA 1 cut(s) 673
AvaII GGWCC 1 cut(s) 680
BaeGI GKGCMC 1 cut(s) 629
BanI GGYRCC 2 cut(s) 65, 640
BbvI GCAGC 4 cut(s) 32, 361, 445, 568
BccI CCATC 3 cut(s) 389, 515, 583
BceAI ACGGC 1 cut(s) 569
BcoDI GTCTC 1 cut(s) 398
BfmI CTRYAG 2 cut(s) 485, 659
BfuAI ACCTGC 1 cut(s) 492
BisI GCNGC 5 cut(s) 21, 133, 350, 459, 582
BlsI GCNGC 5 cut(s) 22, 134, 351, 460, 583
Bme18I GGWCC 1 cut(s) 680
BmgBI CACGTC 1 cut(s) 96
BmgT120I GGNCC 3 cut(s) 134, 538, 680
BmiI GGNNCC 2 cut(s) 67, 642
BmsI GCATC 1 cut(s) 562
BpmI CTGGAG 2 cut(s) 226, 617
Bpu14I TTCGAA 1 cut(s) 673
BpuEI CTTGAG 2 cut(s) 341, 356
BsaHI GRCGYC 2 cut(s) 407, 503
BsaJI CCNNGG 2 cut(s) 516, 541
Bsc4I CCNNNNNNNGG 1 cut(s) 186
Bse118I RCCGGY 2 cut(s) 28, 251
Bse1I ACTGG 2 cut(s) 21, 209
BseDI CCNNGG 2 cut(s) 516, 541
BseGI GGATG 1 cut(s) 496
BseLI CCNNNNNNNGG 1 cut(s) 186
BseMII CTCAG 3 cut(s) 425, 476, 621
BseNI ACTGG 2 cut(s) 21, 209
BseSI GKGCMC 1 cut(s) 629
BseXI GCAGC 4 cut(s) 32, 361, 445, 568
BseYI CCCAGC 1 cut(s) 437
Bsh1236I CGCG 1 cut(s) 247
BshFI GGCC 3 cut(s) 135, 255, 540
BshNI GGYRCC 2 cut(s) 65, 640
BsiSI CCGG 3 cut(s) 29, 187, 252
BslFI GGGAC 1 cut(s) 514
BslI CCNNNNNNNGG 1 cut(s) 186
BsmAI GTCTC 1 cut(s) 398
BsmBI CGTCTC 1 cut(s) 398
BsmFI GGGAC 1 cut(s) 514
BsnI GGCC 3 cut(s) 135, 255, 540
Bsp119I TTCGAA 1 cut(s) 673
Bsp1286I GDGCHC 1 cut(s) 629
Bsp143I GATC 4 cut(s) 325, 520, 553, 655
Bsp19I CCATGG 1 cut(s) 516
BspACI CCGC 3 cut(s) 132, 184, 213
BspANI GGCC 3 cut(s) 135, 255, 540
BspCNI CTCAG 3 cut(s) 424, 475, 622
BspFNI CGCG 1 cut(s) 247
BspLI GGNNCC 2 cut(s) 67, 642
BspMAI CTGCAG 2 cut(s) 489, 663
BspMI ACCTGC 1 cut(s) 492
BspPI GGATC 3 cut(s) 333, 528, 663
BspT104I TTCGAA 1 cut(s) 673
BspT107I GGYRCC 2 cut(s) 65, 640
BsrFI RCCGGY 2 cut(s) 28, 251
BsrI ACTGG 2 cut(s) 21, 209
BssAI RCCGGY 2 cut(s) 28, 251
BssECI CCNNGG 2 cut(s) 516, 541
BssMI GATC 4 cut(s) 325, 520, 553, 655
BssNAI GTATAC 1 cut(s) 481
BssNI GRCGYC 2 cut(s) 407, 503
BssT1I CCWWGG 1 cut(s) 516
Bst1107I GTATAC 1 cut(s) 481
Bst4CI ACNGT 3 cut(s) 70, 125, 295
Bst6I CTCTTC 2 cut(s) 50, 670
BstACI GRCGYC 2 cut(s) 407, 503
BstBI TTCGAA 1 cut(s) 673
BstC8I GCNNGC 1 cut(s) 447
BstDEI CTNAG 4 cut(s) 263, 411, 462, 630
BstDSI CCRYGG 1 cut(s) 516
BstF5I GGATG 1 cut(s) 496
BstFNI CGCG 1 cut(s) 247
BstKTI GATC 4 cut(s) 328, 523, 556, 658
BstMAI GTCTC 1 cut(s) 398
BstMBI GATC 4 cut(s) 325, 520, 553, 655
BstMWI GCNNNNNNNGC 4 cut(s) 29, 219, 455, 581
BstSFI CTRYAG 2 cut(s) 485, 659
BstSLI GKGCMC 1 cut(s) 629
BstUI CGCG 1 cut(s) 247
BstV1I GCAGC 4 cut(s) 32, 361, 445, 568
BstX2I RGATCY 1 cut(s) 655
BstXI CCANNNNNNTGG 1 cut(s) 652
BstYI RGATCY 1 cut(s) 655
BstZ17I GTATAC 1 cut(s) 481
BsuRI GGCC 3 cut(s) 135, 255, 540
BtgI CCRYGG 1 cut(s) 516
BtrI CACGTC 1 cut(s) 96
BtsCI GGATG 1 cut(s) 496
BtsIMutI CAGTG 1 cut(s) 627
BveI ACCTGC 1 cut(s) 492
Cac8I GCNNGC 1 cut(s) 447
CaiI CAGNNNCTG 1 cut(s) 16
Cfr10I RCCGGY 2 cut(s) 28, 251
Cfr13I GGNCC 3 cut(s) 134, 538, 680
CseI GACGC 1 cut(s) 415
Csp6I GTAC 2 cut(s) 249, 641
CviAII CATG 3 cut(s) 517, 526, 613
CviJI RGCY 8 cut(s) 23, 135, 255, 319, 445, 515, 540, 634
CviKI_1 RGCY 8 cut(s) 23, 135, 255, 319, 445, 515, 540, 634
CviQI GTAC 2 cut(s) 249, 641
DdeI CTNAG 4 cut(s) 263, 411, 462, 630
DpnI GATC 4 cut(s) 327, 522, 555, 657
DpnII GATC 4 cut(s) 325, 520, 553, 655
DrdI GACNNNNNNGTC 1 cut(s) 412
DseDI GACNNNNNNGTC 1 cut(s) 412
Eam1104I CTCTTC 2 cut(s) 50, 670
EarI CTCTTC 2 cut(s) 50, 670
EciI GGCGGA 1 cut(s) 173
Eco130I CCWWGG 1 cut(s) 516
Eco47I GGWCC 1 cut(s) 680
EcoO109I RGGNCCY 1 cut(s) 680
EcoT14I CCWWGG 1 cut(s) 516
ErhI CCWWGG 1 cut(s) 516
Esp3I CGTCTC 1 cut(s) 398
FaeI CATG 3 cut(s) 520, 529, 616
FaiI YATR 6 cut(s) 371, 481, 518, 527, 614, 717
FaqI GGGAC 1 cut(s) 514
FatI CATG 3 cut(s) 516, 525, 612
FauI CCCGC 1 cut(s) 206
FblI GTMKAC 1 cut(s) 480
Fnu4HI GCNGC 5 cut(s) 21, 133, 350, 459, 582
FokI GGATG 1 cut(s) 503
Fsp4HI GCNGC 5 cut(s) 21, 133, 350, 459, 582
GluI GCNGC 5 cut(s) 21, 133, 350, 459, 582
GsaI CCCAGC 1 cut(s) 441
GsuI CTGGAG 2 cut(s) 226, 617
HaeIII GGCC 3 cut(s) 135, 255, 540
HapII CCGG 3 cut(s) 29, 187, 252
HgaI GACGC 1 cut(s) 415
Hin1I GRCGYC 2 cut(s) 407, 503
Hin1II CATG 3 cut(s) 520, 529, 616
HindIII AAGCTT 1 cut(s) 317
HpaII CCGG 3 cut(s) 29, 187, 252
HphI GGTGA 2 cut(s) 106, 283
Hpy166II GTNNAC 1 cut(s) 481
Hpy188I TCNGA 5 cut(s) 83, 377, 384, 465, 553
Hpy188III TCNNGA 1 cut(s) 618
Hpy8I GTNNAC 1 cut(s) 481
HpyAV CCTTC 2 cut(s) 59, 64
HpyCH4III ACNGT 3 cut(s) 70, 125, 295
HpyCH4IV ACGT 3 cut(s) 95, 503, 534
HpyCH4V TGCA 4 cut(s) 149, 344, 487, 661
HpyF10VI GCNNNNNNNGC 4 cut(s) 29, 219, 455, 581
HpyF3I CTNAG 4 cut(s) 263, 411, 462, 630
HpySE526I ACGT 3 cut(s) 95, 503, 534
Hsp92I GRCGYC 2 cut(s) 407, 503
Hsp92II CATG 3 cut(s) 520, 529, 616
KpnI GGTACC 1 cut(s) 644
Kzo9I GATC 4 cut(s) 325, 520, 553, 655
Lsp1109I GCAGC 4 cut(s) 32, 361, 445, 568
LweI GCATC 1 cut(s) 562
MaeII ACGT 3 cut(s) 95, 503, 534
MaeIII GTNAC 1 cut(s) 194
MalI GATC 4 cut(s) 327, 522, 555, 657
MboI GATC 4 cut(s) 325, 520, 553, 655
MboII GAAGA 3 cut(s) 37, 687, 722
MflI RGATCY 1 cut(s) 655
MhlI GDGCHC 1 cut(s) 629
MluCI AATT 2 cut(s) 165, 649
MmeI TCCRAC 3 cut(s) 355, 441, 452
MseI TTAA 2 cut(s) 531, 724
MspI CCGG 3 cut(s) 29, 187, 252
MvnI CGCG 1 cut(s) 247
MwoI GCNNNNNNNGC 4 cut(s) 29, 219, 455, 581
NcoI CCATGG 1 cut(s) 516
NdeII GATC 4 cut(s) 325, 520, 553, 655
NlaIII CATG 3 cut(s) 520, 529, 616
NlaIV GGNNCC 2 cut(s) 67, 642
NmeAIII GCCGAG 1 cut(s) 522
NmuCI GTSAC 1 cut(s) 194
NspV TTCGAA 1 cut(s) 673
PkrI GCNGC 5 cut(s) 22, 134, 351, 460, 583
PpuMI RGGWCCY 1 cut(s) 680
Psp5II RGGWCCY 1 cut(s) 680
PspFI CCCAGC 1 cut(s) 437
PspN4I GGNNCC 2 cut(s) 67, 642
PspPI GGNCC 3 cut(s) 134, 538, 680
PspPPI RGGWCCY 1 cut(s) 680
PstI CTGCAG 2 cut(s) 489, 663
PstNI CAGNNNCTG 1 cut(s) 16
PsuI RGATCY 1 cut(s) 655
RsaI GTAC 2 cut(s) 250, 642
RsaNI GTAC 2 cut(s) 249, 641
SaqAI TTAA 2 cut(s) 531, 724
SatI GCNGC 5 cut(s) 21, 133, 350, 459, 582
Sau3AI GATC 4 cut(s) 325, 520, 553, 655
Sau96I GGNCC 3 cut(s) 134, 538, 680
SbfI CCTGCAGG 1 cut(s) 489
SdaI CCTGCAGG 1 cut(s) 489
SduI GDGCHC 1 cut(s) 629
SetI ASST 9 cut(s) 25, 45, 98, 321, 486, 506, 537, 636, 682
SfaNI GCATC 1 cut(s) 562
SfcI CTRYAG 2 cut(s) 485, 659
SfuI TTCGAA 1 cut(s) 673
SinI GGWCC 1 cut(s) 680
SmlI CTYRAG 2 cut(s) 320, 335
SmoI CTYRAG 2 cut(s) 320, 335
Sse8387I CCTGCAGG 1 cut(s) 489
Sse9I AATT 2 cut(s) 165, 649
SsiI CCGC 3 cut(s) 132, 184, 213
StyI CCWWGG 1 cut(s) 516
TaaI ACNGT 3 cut(s) 70, 125, 295
TaiI ACGT 3 cut(s) 98, 506, 537
TaqI TCGA 5 cut(s) 139, 389, 510, 570, 673
TasI AATT 2 cut(s) 165, 649
TauI GCSGC 1 cut(s) 135
Tru1I TTAA 2 cut(s) 531, 724
Tru9I TTAA 2 cut(s) 531, 724
TscAI CASTG 1 cut(s) 634
TseFI GTSAC 1 cut(s) 194
TseI GCWGC 4 cut(s) 20, 349, 458, 581
Tsp45I GTSAC 1 cut(s) 194
TspDTI ATGAA 2 cut(s) 177, 507
TspRI CASTG 1 cut(s) 634
VpaK11BI GGWCC 1 cut(s) 680
XapI RAATTY 2 cut(s) 165, 649
XcmI CCANNNNNNNNNTGG 1 cut(s) 514
XmiI GTMKAC 1 cut(s) 480
ZraI GACGTC 1 cut(s) 504
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.