Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0012943

Physical Location & Seq

Genomic Coordinates Reverse (-)

10852606 .. 10858014

Gene Structure 5409 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g11900.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2067 bp

ATGTCTCGAGGCAAGGATGGTACGGTTTTGGTTATTGATGTTGGCCCGTCGATGCATAAAGCTCTTCCGGAGATAGAGAGGCTTTGCTCCATGCTAGTGGAGAAGAAGCTCATTTACAGCAAAAGTGATGAAGTGGGAGTTGTTTTGTTCGGAACAGAAGGCACTGAAAATGTTCTAACAAGGGAAGTGGGTGGATATGATCATATAACGGTCTTACAAGATATCAAGGTTGTTGATGAAGACCTTATTCAGGCTGTAGAGCAACTCCCACGAGGAACTCATAATGGTGATTTTCTTGATGCTGTAATTGTTGGGATGGATATGCTGATAAAGAAATATGGAGAAACAAACAAAGGAAAGAAACGTCTTTGTCTATTTACGAATGCACACTACCCTACTAAAGCTCCACTAGAAGGAAGTAAAGAAGATCAAGTTATCGCCATTGCCGGACACATGAATACACAAGGCATGAGATTGGAAAGTATAGTCATAAGAGGAGGGCTTACTGGGGAAGCAAAGAAAAGTATAATGGATGAGAATGATCATCTATTGGATATATTCTCAAAGAGAACATGTGCGAAGTTAGTACATGTCGAGACTCCAACCTCATTGCTAGGTGCTCTTAGAACTCGAAAAGTTTCTCCTGTTACAATATTCAGGGGAGATCTTGAGCTGACCCCCAAAATGAAGATTAAGGTATGGGTTTACAAGAAAACATCGGAAGACAAGTTTCCCACTCTGAAGAAATATTCTGATAGAGCCGCACCAACGGATAAATATGCAACACACGAAGTTAAGGTGGAATTTGAGTATAAGAGTGCTGAAGACCTGAGTAAAGTCGTACCTCCAGAACAGAGAATTAAAGGTTATCGTTATGGACCTCAAGTAATTCCCATATCATCTGCTGAATGGGATGCCGTCAAGTTCAAACCAGAAAAAAGTGTGAAACTTCTGGGATTTTCTGATGCTCAAAACATACTGCGACACTATTACATGAAAGATGTCAACATTTTCATTCCTGAACCGGGTAATACAAAGGCCATTATTGCTGTTTCTGCCTTGGCACGAGCAATGAAAGACATGAATAAGGTGGCAATCGTGCGTTGTGTTTGGAGACAAGGACAAGCAAGTGTTGTTGTGGGGGCCTTGATACCCAATGTATCTGACAACGATAATATTCCTGATTCTTTTTACTTCAACGTACTCCCTTTTACTGAGGACATTCGAGAATTTCAGTTCCCGTCTTTCAATAATTTCCCAGCAGCATGGCAACCAAATGAACAGCAGCAAGAGGCTGCTGATGACTTCGTGAGGATGTTTGATCTTGCACCACCTGGGAAACAGGAGATTCTGCCTCCTGACTTAACACCGAATCCTGTTCTTGAGCGGTTTTTCCGTCATCTCGAGTTAAAGTCAAGGGACCCAGACACAGCTGTACCTCCAATTGATGAAACTCTCAGGAAGATTAGTGAACCAGATAAGGAACTGATTGCTGCAAACAAGTCTGTTATTGATGCATTTCGTAGTCGTTTTGAAGTCAAAGAAAACCCAAAGCTGAAGAAATCAAGTAGGCGACTATTGAAAGAAAAACCATCTGCGTCCGATGAAAGAGAGGATCATATGGACATTTCTGATCAACCCAACTCCAACGAACATACATCTGGAATTAAGGTTACAACAATCGGGGATTCTGCTCCTGTCCAGGATTTTGAGGCTATGATGTCCCGTAGAGATAGCCCAGAATGGGTTGGTAAAGCCATCAAGGATATGAAAAACAAAATACACGACTTAGTAGAGGACTCTCACGAAGGGGATAACTATCCTAAAGCACTTGAATGTTTAATAGCGCTCCGGAAGGGTTGTATTCTAGAGCAAGAACCAAACAAGTTCAATGATTTTCTGCGGTCTCTATGCAAATTCTGCCAGGATAAATACCTAAGCAGTTTCTGTGAATTTCTTGCAACCAAAGAACTCACCCTGATTCCCAAGACAGAAGCTATAGACAGTGAAGTTACAGATGCTGAAGCTAGAAGCTTTCTGGTCAAATCAGAGCCAAAGTTAGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000723 GO:0000726 GO:0000781 GO:0000784 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006303 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0008150 GO:0008152 GO:0009266 GO:0009408 GO:0009628 GO:0009987 GO:0015074 GO:0016043 GO:0031974 GO:0031981 GO:0032200 GO:0033554 GO:0034641 GO:0042162 GO:0042592 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0050896 GO:0051276 GO:0051716 GO:0060249 GO:0065007 GO:0065008 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:0098687 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03450 map03450

Pfam Domains

Protein Families

Ku Ku_C Ku_N Ku_PK_bind

Protein Analysis

689

Amino Acids

77.64

Weight (kDa)

5.99

Isoelectric Point (pI)

41.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ku_N	PF03731	8 - 138	5.6e-16	Ku70/Ku80 N-terminal alpha/beta domain
Ku	PF02735	227 - 431	3e-44	Ku70/Ku80 beta-barrel domain
Ku_C	PF03730	453 - 534	1.8e-07	Ku70/Ku80 C-terminal arm
Ku_PK_bind	PF08785	566 - 680	3.8e-37	Ku C terminal domain like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012943)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48050 AT1G48050 AT1G48050
fragaria_vesca	FvH4_7g11900 FvH4_7g11900
malus_domestica	MD07G1121000.v1.1
prunus_persica	Prupe.2G145600_v2.0.a1
pyrus_communis	pycom07g11020
rosa_chinensis	RchiOBHm_Chr1g0350581
rosa_laevigata	RLG00000028472
rosa_multiflora	Rmu_sc0009041.1_g000003
rosa_roxburghii	Rroxscaffold_4G00304720
rosa_rugosa	Rorug01G0212300
rosa_samantha	Rh1AG226800 Rh1BG195500 Rh1CG211600 Rh1DG223500
rosa_wichuraiana	Rw1G019600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	1387
AccIII	TCCGGA	2 cut(s)	67, 1851
AciI	CCGC	3 cut(s)	762, 1387, 1903
AclWI	GGATC	1 cut(s)	1623
AcsI	RAATTY	4 cut(s)	803, 1229, 1916, 1952
AcuI	CTGAAG	4 cut(s)	761, 843, 1577, 2043
AfaI	GTAC	5 cut(s)	22, 588, 843, 1203, 1437
AfeI	AGCGCT	1 cut(s)	1848
AfiI	CCNNNNNNNGG	4 cut(s)	250, 413, 1025, 1744
AflIII	ACRYGT	2 cut(s)	572, 589
AgsI	TTSAA	7 cut(s)	928, 1198, 1249, 1535, 1582, 1835, 1891
AjnI	CCWGG	3 cut(s)	1333, 1701, 1923
AluBI	AGCT	9 cut(s)	62, 109, 404, 673, 1433, 1555, 1997, 2027, 2034
AluI	AGCT	9 cut(s)	62, 109, 404, 673, 1433, 1555, 1997, 2027, 2034
Alw21I	GWGCWC	1 cut(s)	622
Alw26I	GTCTC	4 cut(s)	9, 590, 1108, 1911
AlwI	GGATC	1 cut(s)	1623
AlwNI	CAGNNNCTG	2 cut(s)	1947, 2021
Ama87I	CYCGRG	2 cut(s)	6, 1403
Aor13HI	TCCGGA	2 cut(s)	67, 1851
Aor51HI	AGCGCT	1 cut(s)	1848
AoxI	GGCC	3 cut(s)	43, 1038, 1143
ApeKI	GCWGC	4 cut(s)	1262, 1285, 1295, 1493
ApoI	RAATTY	4 cut(s)	803, 1229, 1916, 1952
Asp700I	GAANNNNTTC	2 cut(s)	171, 637
AspLEI	GCGC	1 cut(s)	1849
AspS9I	GGNCC	4 cut(s)	44, 878, 1143, 1420
AsuC2I	CCSGG	1 cut(s)	1026
AsuHPI	GGTGA	2 cut(s)	299, 1966
AvaI	CYCGRG	2 cut(s)	6, 1403
AvaII	GGWCC	2 cut(s)	878, 1420
BaeI	ACNNNNGTAYC	2 cut(s)	1419, 1452
BarI	GAAGNNNNNNTAC	2 cut(s)	98, 130
BauI	CACGAG	2 cut(s)	270, 1065
BbsI	GAAGAC	3 cut(s)	246, 729, 831
Bbv12I	GWGCWC	1 cut(s)	622
BbvI	GCAGC	4 cut(s)	1274, 1282, 1297, 1480
BccI	CCATC	4 cut(s)	11, 310, 1600, 1766
BceAI	ACGGC	1 cut(s)	902
BciT130I	CCWGG	3 cut(s)	1335, 1703, 1925
BclI	TGATCA	3 cut(s)	199, 541, 1633
BcnI	CCSGG	1 cut(s)	1026
BcoDI	GTCTC	4 cut(s)	9, 590, 1108, 1911
BfaI	CTAG	5 cut(s)	95, 410, 614, 1868, 2028
BfmI	CTRYAG	2 cut(s)	255, 1998
BfoI	RGCGCY	1 cut(s)	1850
BglII	AGATCT	1 cut(s)	664
BisI	GCNGC	5 cut(s)	762, 1263, 1286, 1296, 1494
BlsI	GCNGC	5 cut(s)	763, 1264, 1287, 1297, 1495
Bme1390I	CCNGG	4 cut(s)	1026, 1335, 1703, 1925
Bme18I	GGWCC	2 cut(s)	878, 1420
BmeT110I	CYCGRG	2 cut(s)	6, 1403
BmgT120I	GGNCC	4 cut(s)	44, 878, 1143, 1420
BmiI	GGNNCC	3 cut(s)	1144, 1421, 1422
BmrFI	CCNGG	4 cut(s)	1026, 1335, 1703, 1925
BmrI	ACTGGG	1 cut(s)	516
BmsI	GCATC	6 cut(s)	42, 289, 904, 955, 1504, 2008
BmuI	ACTGGG	1 cut(s)	516
BpiI	GAAGAC	3 cut(s)	246, 729, 831
BpmI	CTGGAG	1 cut(s)	831
Bpu10I	CCTNAGC	1 cut(s)	1937
BpuEI	CTTGAG	3 cut(s)	689, 867, 1403
BpuMI	CCSGG	1 cut(s)	1026
BsaBI	GATNNNNATC	1 cut(s)	1818
BsaI	GGTCTC	1 cut(s)	1911
BsaJI	CCNNGG	2 cut(s)	1059, 1334
BsaWI	WCCGGW	2 cut(s)	67, 1851
BsaXI	ACNNNNNCTCC	2 cut(s)	388, 418
Bsc4I	CCNNNNNNNGG	4 cut(s)	250, 413, 1025, 1744
Bse1I	ACTGG	1 cut(s)	511
Bse3DI	GCAATG	3 cut(s)	441, 608, 1077
Bse8I	GATNNNNATC	1 cut(s)	1818
BseAI	TCCGGA	2 cut(s)	67, 1851
BseBI	CCWGG	3 cut(s)	1335, 1703, 1925
BseDI	CCNNGG	2 cut(s)	1059, 1334
BseGI	GGATG	5 cut(s)	22, 321, 538, 919, 1320
BseJI	GATNNNNATC	1 cut(s)	1818
BseLI	CCNNNNNNNGG	4 cut(s)	250, 413, 1025, 1744
BseMI	GCAATG	3 cut(s)	441, 608, 1077
BseMII	CTCAG	3 cut(s)	821, 1206, 1471
BseNI	ACTGG	1 cut(s)	511
BseRI	GAGGAG	1 cut(s)	510
BseXI	GCAGC	4 cut(s)	1274, 1282, 1297, 1480
BseYI	CCCAGC	1 cut(s)	1258
BshFI	GGCC	3 cut(s)	45, 1040, 1145
BsiHKAI	GWGCWC	1 cut(s)	622
BsiHKCI	CYCGRG	2 cut(s)	6, 1403
BsiSI	CCGG	4 cut(s)	68, 447, 1025, 1852
BslFI	GGGAC	2 cut(s)	1433, 1708
BslI	CCNNNNNNNGG	4 cut(s)	250, 413, 1025, 1744
BsmAI	GTCTC	4 cut(s)	9, 590, 1108, 1911
BsmFI	GGGAC	2 cut(s)	1433, 1708
BsmI	GAATGC	1 cut(s)	388
BsnI	GGCC	3 cut(s)	45, 1040, 1145
Bso31I	GGTCTC	1 cut(s)	1911
BsoBI	CYCGRG	2 cut(s)	6, 1403
Bsp1286I	GDGCHC	1 cut(s)	622
Bsp13I	TCCGGA	2 cut(s)	67, 1851
Bsp143I	GATC	7 cut(s)	199, 427, 541, 664, 1321, 1615, 1633
BspACI	CCGC	3 cut(s)	762, 1387, 1903
BspANI	GGCC	3 cut(s)	45, 1040, 1145
BspCNI	CTCAG	3 cut(s)	822, 1207, 1470
BspEI	TCCGGA	2 cut(s)	67, 1851
BspLI	GGNNCC	3 cut(s)	1144, 1421, 1422
BspPI	GGATC	1 cut(s)	1623
BspQI	GCTCTTC	1 cut(s)	69
BspTNI	GGTCTC	1 cut(s)	1911
BsrBI	CCGCTC	1 cut(s)	1387
BsrDI	GCAATG	3 cut(s)	441, 608, 1077
BsrI	ACTGG	1 cut(s)	511
BssECI	CCNNGG	2 cut(s)	1059, 1334
BssMI	GATC	7 cut(s)	199, 427, 541, 664, 1321, 1615, 1633
BssSI	CACGAG	2 cut(s)	270, 1065
BssT1I	CCWWGG	1 cut(s)	1059
Bst2BI	CACGAG	2 cut(s)	270, 1065
Bst2UI	CCWGG	3 cut(s)	1335, 1703, 1925
Bst4CI	ACNGT	3 cut(s)	25, 211, 2006
Bst6I	CTCTTC	1 cut(s)	69
BstAPI	GCANNNNNTGC	1 cut(s)	1920
BstDEI	CTNAG	6 cut(s)	623, 830, 1215, 1457, 1789, 1937
BstENI	CCTNNNNNAGG	1 cut(s)	248
BstF5I	GGATG	5 cut(s)	22, 321, 538, 919, 1320
BstH2I	RGCGCY	1 cut(s)	1850
BstHHI	GCGC	1 cut(s)	1849
BstKTI	GATC	7 cut(s)	202, 430, 544, 667, 1324, 1618, 1636
BstMAI	GTCTC	4 cut(s)	9, 590, 1108, 1911
BstMBI	GATC	7 cut(s)	199, 427, 541, 664, 1321, 1615, 1633
BstMWI	GCNNNNNNNGC	3 cut(s)	1046, 1055, 1920
BstNI	CCWGG	3 cut(s)	1335, 1703, 1925
BstNSI	RCATGY	2 cut(s)	576, 593
BstSCI	CCNGG	4 cut(s)	1024, 1333, 1701, 1923
BstSFI	CTRYAG	2 cut(s)	255, 1998
BstV1I	GCAGC	4 cut(s)	1274, 1282, 1297, 1480
BstV2I	GAAGAC	3 cut(s)	246, 729, 831
BstX2I	RGATCY	1 cut(s)	664
BstXI	CCANNNNNNTGG	2 cut(s)	97, 1266
BstYI	RGATCY	1 cut(s)	664
BsuRI	GGCC	3 cut(s)	45, 1040, 1145
BtsCI	GGATG	5 cut(s)	22, 321, 538, 919, 1320
BtsIMutI	CAGTG	2 cut(s)	162, 2011
CaiI	CAGNNNCTG	2 cut(s)	1947, 2021
CfoI	GCGC	1 cut(s)	1849
Cfr13I	GGNCC	4 cut(s)	44, 878, 1143, 1420
CseI	GACGC	1 cut(s)	1587
Csp6I	GTAC	5 cut(s)	21, 587, 842, 1202, 1436
CspCI	CAANNNNNGTGG	2 cut(s)	168, 203
CviAII	CATG	8 cut(s)	91, 454, 469, 573, 590, 994, 1081, 1266
CviQI	GTAC	5 cut(s)	21, 587, 842, 1202, 1436
DdeI	CTNAG	6 cut(s)	623, 830, 1215, 1457, 1789, 1937
DpnI	GATC	7 cut(s)	201, 429, 543, 666, 1323, 1617, 1635
DpnII	GATC	7 cut(s)	199, 427, 541, 664, 1321, 1615, 1633
Eam1104I	CTCTTC	1 cut(s)	69
EarI	CTCTTC	1 cut(s)	69
Eco130I	CCWWGG	1 cut(s)	1059
Eco31I	GGTCTC	1 cut(s)	1911
Eco32I	GATATC	1 cut(s)	223
Eco47I	GGWCC	2 cut(s)	878, 1420
Eco47III	AGCGCT	1 cut(s)	1848
Eco57I	CTGAAG	4 cut(s)	761, 843, 1577, 2043
Eco88I	CYCGRG	2 cut(s)	6, 1403
EcoNI	CCTNNNNNAGG	1 cut(s)	248
EcoO109I	RGGNCCY	2 cut(s)	1143, 1420
EcoRII	CCWGG	3 cut(s)	1333, 1701, 1923
EcoRV	GATATC	1 cut(s)	223
EcoT14I	CCWWGG	1 cut(s)	1059
EcoT22I	ATGCAT	2 cut(s)	57, 1519
ErhI	CCWWGG	1 cut(s)	1059
FaeI	CATG	8 cut(s)	94, 457, 472, 576, 593, 997, 1084, 1269
FaqI	GGGAC	2 cut(s)	1433, 1708
FatI	CATG	8 cut(s)	90, 453, 468, 572, 589, 993, 1080, 1265
FauNDI	CATATG	1 cut(s)	1620
FbaI	TGATCA	3 cut(s)	199, 541, 1633
Fnu4HI	GCNGC	5 cut(s)	762, 1263, 1286, 1296, 1494
FokI	GGATG	5 cut(s)	29, 328, 545, 926, 1327
Fsp4HI	GCNGC	5 cut(s)	762, 1263, 1286, 1296, 1494
FspBI	CTAG	5 cut(s)	95, 410, 614, 1868, 2028
GlaI	GCGC	1 cut(s)	1848
GluI	GCNGC	5 cut(s)	762, 1263, 1286, 1296, 1494
GsaI	CCCAGC	1 cut(s)	1262
GsuI	CTGGAG	1 cut(s)	831
HaeII	RGCGCY	1 cut(s)	1850
HaeIII	GGCC	3 cut(s)	45, 1040, 1145
HapII	CCGG	4 cut(s)	68, 447, 1025, 1852
HgaI	GACGC	1 cut(s)	1587
HhaI	GCGC	1 cut(s)	1849
Hin1II	CATG	8 cut(s)	94, 457, 472, 576, 593, 997, 1084, 1269
Hin6I	GCGC	1 cut(s)	1847
HinP1I	GCGC	1 cut(s)	1847
HincII	GTYRAC	1 cut(s)	1006
HindII	GTYRAC	1 cut(s)	1006
HindIII	AAGCTT	1 cut(s)	2032
HinfI	GANTC	7 cut(s)	598, 1184, 1348, 1372, 1688, 1799, 1981
HpaII	CCGG	4 cut(s)	68, 447, 1025, 1852
HphI	GGTGA	2 cut(s)	299, 1966
Hpy166II	GTNNAC	3 cut(s)	706, 1006, 1472
Hpy188I	TCNGA	9 cut(s)	152, 721, 741, 754, 964, 1165, 1603, 1633, 2050
Hpy8I	GTNNAC	3 cut(s)	706, 1006, 1472
Hpy99I	CGWCG	1 cut(s)	52
HpyAV	CCTTC	4 cut(s)	152, 407, 1802, 1849
HpyCH4III	ACNGT	3 cut(s)	25, 211, 2006
HpyCH4IV	ACGT	2 cut(s)	364, 1200
HpyCH4V	TGCA	8 cut(s)	55, 386, 782, 1328, 1496, 1517, 1914, 1961
HpyF10VI	GCNNNNNNNGC	3 cut(s)	1046, 1055, 1920
HpyF3I	CTNAG	6 cut(s)	623, 830, 1215, 1457, 1789, 1937
HpySE526I	ACGT	2 cut(s)	364, 1200
Hsp92II	CATG	8 cut(s)	94, 457, 472, 576, 593, 997, 1084, 1269
HspAI	GCGC	1 cut(s)	1847
KflI	GGGWCCC	1 cut(s)	1420
Kpn2I	TCCGGA	2 cut(s)	67, 1851
Ksp22I	TGATCA	3 cut(s)	199, 541, 1633
Kzo9I	GATC	7 cut(s)	199, 427, 541, 664, 1321, 1615, 1633
LguI	GCTCTTC	1 cut(s)	69
LmnI	GCTCC	4 cut(s)	92, 409, 1699, 1854
Lsp1109I	GCAGC	4 cut(s)	1274, 1282, 1297, 1480
LweI	GCATC	6 cut(s)	42, 289, 904, 955, 1504, 2008
MaeI	CTAG	5 cut(s)	95, 410, 614, 1868, 2028
MaeII	ACGT	2 cut(s)	364, 1200
MaeIII	GTNAC	3 cut(s)	646, 1672, 2011
MalI	GATC	7 cut(s)	201, 429, 543, 666, 1323, 1617, 1635
MbiI	CCGCTC	1 cut(s)	1387
MboI	GATC	7 cut(s)	199, 427, 541, 664, 1321, 1615, 1633
MfeI	CAATTG	1 cut(s)	1443
MflI	RGATCY	1 cut(s)	664
MhlI	GDGCHC	1 cut(s)	622
MlyI	GAGTC	2 cut(s)	592, 1793
MmeI	TCCRAC	2 cut(s)	626, 1671
Mph1103I	ATGCAT	2 cut(s)	57, 1519
MroI	TCCGGA	2 cut(s)	67, 1851
MroXI	GAANNNNTTC	2 cut(s)	171, 637
MseI	TTAA	7 cut(s)	693, 795, 861, 1364, 1409, 1668, 1841
MslI	CAYNNNNRTG	3 cut(s)	95, 285, 1834
MspA1I	CMGCKG	1 cut(s)	1433
MspI	CCGG	4 cut(s)	68, 447, 1025, 1852
MspR9I	CCNGG	4 cut(s)	1026, 1335, 1703, 1925
MunI	CAATTG	1 cut(s)	1443
Mva1269I	GAATGC	1 cut(s)	388
MvaI	CCWGG	3 cut(s)	1335, 1703, 1925
MwoI	GCNNNNNNNGC	3 cut(s)	1046, 1055, 1920
NciI	CCSGG	1 cut(s)	1026
NdeI	CATATG	1 cut(s)	1620
NdeII	GATC	7 cut(s)	199, 427, 541, 664, 1321, 1615, 1633
NlaIII	CATG	8 cut(s)	94, 457, 472, 576, 593, 997, 1084, 1269
NlaIV	GGNNCC	3 cut(s)	1144, 1421, 1422
NsiI	ATGCAT	2 cut(s)	57, 1519
NspI	RCATGY	2 cut(s)	576, 593
PaeR7I	CTCGAG	2 cut(s)	6, 1403
PciI	ACATGT	2 cut(s)	572, 589
PciSI	GCTCTTC	1 cut(s)	69
PctI	GAATGC	1 cut(s)	388
PdmI	GAANNNNTTC	2 cut(s)	171, 637
PfeI	GAWTC	5 cut(s)	1184, 1348, 1372, 1688, 1981
PfoI	TCCNGGA	1 cut(s)	1701
PkrI	GCNGC	5 cut(s)	763, 1264, 1287, 1297, 1495
PleI	GAGTC	2 cut(s)	592, 1793
PpsI	GAGTC	2 cut(s)	592, 1793
PpuMI	RGGWCCY	1 cut(s)	1420
PscI	ACATGT	2 cut(s)	572, 589
Psp5II	RGGWCCY	1 cut(s)	1420
Psp6I	CCWGG	3 cut(s)	1333, 1701, 1923
PspFI	CCCAGC	1 cut(s)	1258
PspGI	CCWGG	3 cut(s)	1333, 1701, 1923
PspN4I	GGNNCC	3 cut(s)	1144, 1421, 1422
PspPI	GGNCC	4 cut(s)	44, 878, 1143, 1420
PspPPI	RGGWCCY	1 cut(s)	1420
PstNI	CAGNNNCTG	2 cut(s)	1947, 2021
PsuI	RGATCY	1 cut(s)	664
PvuII	CAGCTG	1 cut(s)	1433
RsaI	GTAC	5 cut(s)	22, 588, 843, 1203, 1437
RsaNI	GTAC	5 cut(s)	21, 587, 842, 1202, 1436
RseI	CAYNNNNRTG	3 cut(s)	95, 285, 1834
SapI	GCTCTTC	1 cut(s)	69
SaqAI	TTAA	7 cut(s)	693, 795, 861, 1364, 1409, 1668, 1841
SatI	GCNGC	5 cut(s)	762, 1263, 1286, 1296, 1494
Sau3AI	GATC	7 cut(s)	199, 427, 541, 664, 1321, 1615, 1633
Sau96I	GGNCC	4 cut(s)	44, 878, 1143, 1420
SchI	GAGTC	2 cut(s)	592, 1793
ScrFI	CCNGG	4 cut(s)	1026, 1335, 1703, 1925
SduI	GDGCHC	1 cut(s)	622
SfaNI	GCATC	6 cut(s)	42, 289, 904, 955, 1504, 2008
SfcI	CTRYAG	2 cut(s)	255, 1998
Sfr274I	CTCGAG	2 cut(s)	6, 1403
SinI	GGWCC	2 cut(s)	878, 1420
SlaI	CTCGAG	2 cut(s)	6, 1403
SmiMI	CAYNNNNRTG	3 cut(s)	95, 285, 1834
SmlI	CTYRAG	5 cut(s)	6, 668, 882, 1382, 1403
SmoI	CTYRAG	5 cut(s)	6, 668, 882, 1382, 1403
SsiI	CCGC	3 cut(s)	762, 1387, 1903
SspI	AATATT	3 cut(s)	654, 749, 1177
SspMI	CTAG	5 cut(s)	95, 410, 614, 1868, 2028
StyD4I	CCNGG	4 cut(s)	1024, 1333, 1701, 1923
StyI	CCWWGG	1 cut(s)	1059
TaaI	ACNGT	3 cut(s)	25, 211, 2006
TaiI	ACGT	2 cut(s)	367, 1203
TaqI	TCGA	6 cut(s)	7, 50, 594, 631, 1225, 1404
TatI	WGTACW	1 cut(s)	586
TauI	GCSGC	1 cut(s)	764
TfiI	GAWTC	5 cut(s)	1184, 1348, 1372, 1688, 1981
Tru1I	TTAA	7 cut(s)	693, 795, 861, 1364, 1409, 1668, 1841
Tru9I	TTAA	7 cut(s)	693, 795, 861, 1364, 1409, 1668, 1841
TscAI	CASTG	2 cut(s)	169, 2011
TseI	GCWGC	4 cut(s)	1262, 1285, 1295, 1493
TspGWI	ACGGA	2 cut(s)	785, 1385
TspRI	CASTG	2 cut(s)	169, 2011
VpaK11BI	GGWCC	2 cut(s)	878, 1420
XagI	CCTNNNNNAGG	1 cut(s)	248
XapI	RAATTY	4 cut(s)	803, 1229, 1916, 1952
XbaI	TCTAGA	1 cut(s)	1867
XceI	RCATGY	2 cut(s)	576, 593
XhoI	CTCGAG	2 cut(s)	6, 1403
XmnI	GAANNNNTTC	2 cut(s)	171, 637
XspI	CTAG	5 cut(s)	95, 410, 614, 1868, 2028
Zsp2I	ATGCAT	2 cut(s)	57, 1519

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.