Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0012943

Physical Location & Seq

Genomic Coordinates Reverse (-)

11397007 .. 11400881

Gene Structure 3875 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g11020.9

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1626 bp

ATGGCTCGAAACAAGGATGCTATGGTTTTGTTGATTGATGTTAGCCCGTCGATGCACAAAGCTCTTCCGGAGATTGAAAAAGTTTGCTCTATGCTAATAGAGAAGAAGTTGATTTACAATAAATATGATGAAGTAGGAGTTGTATTGTTTGGAACCGAAGACACTGAAAACGAACTGACAACGGAAGTGGGTGGATACGAGCATGTAGTGGTTTTACAAAATATCAAAGTTGTTGATGGGCATCTTGTTGAAACTCTACAACAACTCCCACGAGGAACTCATGCGGGTGATTTTCTTGATGCCATAATTGTTGGGTTGGATATGCTGATCAAGAAATATGGAGAAACATACAAAGGAAAGAAACGCCTTTGTCTGCTTACAAATGCACAATTTCCTACTAAATTTCCGCAAGAGGGTACTAAAGAAGAACAAGTCACCACCATTGCTGGTCACATGAGTAAACATGGTATGAGAATGGAAAGTATAGTTGTGAGAGGAAAGCTTACTGGGGAAGCTGATAAAAACATAATGGATGAGAATGATAATCTATTGGGTATATTTTCAAAGAAAACATGTGCAAAGTTGGTACATGTTGAGAGTCCAACTTCATTGCTAGGTGCTCTTAGAACTCGAAAGATATCTCCAGTCACAATATTCAGGGGTGATCTTGAGCTTAGCCCCAAAATGAAGATTAAGGTATGGGTTTACAAGAAAACATCGGAAGAGAAGTTTCCCACTCTGAAGAAATATTCTGAGAAAGCGCCTCCAACAGATAGATTTGCTACACATGAAGTCAAGGTGGACTTTGAGTATAAAAGTGTTGAAGATCCTAGTAAAGTTGTGCCTCCTGACCAGAGGATTAAAGGTTATCGTTATGGCCCTCAAGTTATTCCCATATCATCTGCTGAATGGGATGCTGTAAAGTTCAAGCCAGAAAAGAGTGTGAAACTTCTGGGATTTTCTGATGCTAAAAATATAATGCGACATTATTACATGAAAGATGTCAATATTTTCATCCCTGAGCCGGGTAATAGAAGGGCCATTCTTGCTGTTTCTGCCCTAGCAAGAGCTATGAAAGATATGAATAAGGTGGCAATTCTGCGCTGTGTTTGGAGACAAGGACAAGGAAATGTTGTTGTGGGGGTCTTAACACCTAATGTCTCGGACAATGACAATATCCCTGATTCATTTTACTTCAATGTACTCCCTTTTGCTGAGGATGTTAGGGAGTTTCAATTCCCATCTTTCAGTAACTTCCCAGAATCGTGGCAACCAAGTGAACAACAGCAAGAGGCTGCAGATGACCTTGTCAAGATGCTTGACCTTGCACCACCTGGCAAAGAGGAGGCTCTGCTGCCTAGCTTAACCCCAAATCCTGTCCTTGAGCGCTTTTATCGTCACCTTGAGTTGAAGTCAAGGCAACCAGATGCAGTTGTACCTCCACTTGATGAAACTCTTAGGACGATTACTGAACCTGATAAAGAGCTTGTTTCTCAAAACAAGTCTATTATTGATGTCTTTCATAGCCGTTTTGAGCTCAAAGAGAACCCAAAGCTGAAGAAATCAAGTAGGCGATTTTTGCGAGATAACCCATCTGCGTCAAAGGAGGTAGAGGATCGATCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000723 GO:0000726 GO:0000781 GO:0000784 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006303 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0008150 GO:0008152 GO:0009266 GO:0009408 GO:0009628 GO:0009987 GO:0015074 GO:0016043 GO:0031974 GO:0031981 GO:0032200 GO:0033554 GO:0034641 GO:0042162 GO:0042592 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0050896 GO:0051276 GO:0051716 GO:0060249 GO:0065007 GO:0065008 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:0098687 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03450 map03450

Pfam Domains

Protein Families

Ku Ku_C Ku_N Ku_PK_bind

Protein Analysis

542

Amino Acids

61.37

Weight (kDa)

8.07

Isoelectric Point (pI)

46.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012943)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48050 AT1G48050 AT1G48050
fragaria_vesca	FvH4_7g11900 FvH4_7g11900
malus_domestica	MD07G1121000.v1.1
prunus_persica	Prupe.2G145600_v2.0.a1
pyrus_communis	pycom07g11020
rosa_chinensis	RchiOBHm_Chr1g0350581
rosa_laevigata	RLG00000028472
rosa_multiflora	Rmu_sc0009041.1_g000003
rosa_roxburghii	Rroxscaffold_4G00304720
rosa_rugosa	Rorug01G0212300
rosa_samantha	Rh1AG226800 Rh1BG195500 Rh1CG211600 Rh1DG223500
rosa_wichuraiana	Rw1G019600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	67
AciI	CCGC	2 cut(s)	284, 407
AclWI	GGATC	2 cut(s)	821, 1623
AcsI	RAATTY	1 cut(s)	401
AcuI	CTGAAG	2 cut(s)	761, 1577
AfaI	GTAC	4 cut(s)	418, 588, 1203, 1437
AfeI	AGCGCT	1 cut(s)	1388
AfiI	CCNNNNNNNGG	3 cut(s)	413, 1024, 1025
AflIII	ACRYGT	2 cut(s)	572, 589
AgsI	TTSAA	8 cut(s)	77, 251, 564, 824, 928, 1198, 1235, 1411
AjnI	CCWGG	1 cut(s)	1333
AluBI	AGCT	9 cut(s)	62, 502, 515, 673, 1070, 1362, 1486, 1537, 1555
AluI	AGCT	9 cut(s)	62, 502, 515, 673, 1070, 1362, 1486, 1537, 1555
Alw21I	GWGCWC	2 cut(s)	622, 1539
Alw26I	GTCTC	2 cut(s)	1108, 1165
AlwI	GGATC	2 cut(s)	821, 1623
Aor13HI	TCCGGA	1 cut(s)	67
Aor51HI	AGCGCT	1 cut(s)	1388
AoxI	GGCC	2 cut(s)	877, 1038
ApeKI	GCWGC	2 cut(s)	1295, 1354
ApoI	RAATTY	1 cut(s)	401
AspLEI	GCGC	3 cut(s)	763, 1104, 1389
AspS9I	GGNCC	2 cut(s)	878, 1038
AsuC2I	CCSGG	1 cut(s)	1026
AsuHPI	GGTGA	4 cut(s)	299, 427, 674, 1391
BanII	GRGCYC	1 cut(s)	1539
BarI	GAAGNNNNNNTAC	2 cut(s)	98, 130
BauI	CACGAG	1 cut(s)	270
BbsI	GAAGAC	1 cut(s)	165
Bbv12I	GWGCWC	2 cut(s)	622, 1539
BbvCI	CCTCAGC	1 cut(s)	1215
BbvI	GCAGC	2 cut(s)	1282, 1341
BccI	CCATC	3 cut(s)	230, 1249, 1600
BceAI	ACGGC	1 cut(s)	1512
BciT130I	CCWGG	1 cut(s)	1335
BciVI	GTATCC	1 cut(s)	188
BclI	TGATCA	1 cut(s)	327
BcnI	CCSGG	1 cut(s)	1026
BcoDI	GTCTC	2 cut(s)	1108, 1165
BfaI	CTAG	4 cut(s)	614, 831, 1061, 1359
BfmI	CTRYAG	1 cut(s)	1296
BfoI	RGCGCY	2 cut(s)	764, 1390
BfuI	GTATCC	1 cut(s)	188
BisI	GCNGC	2 cut(s)	1296, 1355
BlpI	GCTNAGC	1 cut(s)	674
BlsI	GCNGC	2 cut(s)	1297, 1356
Bme1390I	CCNGG	2 cut(s)	1026, 1335
BmgT120I	GGNCC	2 cut(s)	878, 1038
BmiI	GGNNCC	1 cut(s)	154
BmrFI	CCNGG	2 cut(s)	1026, 1335
BmrI	ACTGGG	1 cut(s)	516
BmsI	GCATC	8 cut(s)	7, 42, 250, 289, 904, 955, 1305, 1417
BmuI	ACTGGG	1 cut(s)	516
BpiI	GAAGAC	1 cut(s)	165
BpmI	CTGGAG	1 cut(s)	627
Bpu10I	CCTNAGC	2 cut(s)	1020, 1215
Bpu1102I	GCTNAGC	1 cut(s)	674
BpuEI	CTTGAG	4 cut(s)	689, 867, 1403, 1424
BpuMI	CCSGG	1 cut(s)	1026
Bsa29I	ATCGAT	1 cut(s)	1618
BsaBI	GATNNNNATC	1 cut(s)	240
BsaWI	WCCGGW	1 cut(s)	67
BsaXI	ACNNNNNCTCC	2 cut(s)	249, 279
Bsc4I	CCNNNNNNNGG	3 cut(s)	413, 1024, 1025
Bse1I	ACTGG	2 cut(s)	511, 644
Bse3DI	GCAATG	2 cut(s)	441, 608
Bse8I	GATNNNNATC	1 cut(s)	240
BseAI	TCCGGA	1 cut(s)	67
BseBI	CCWGG	1 cut(s)	1335
BseCI	ATCGAT	1 cut(s)	1618
BseGI	GGATG	5 cut(s)	22, 538, 919, 1014, 1225
BseJI	GATNNNNATC	1 cut(s)	240
BseLI	CCNNNNNNNGG	3 cut(s)	413, 1024, 1025
BseMI	GCAATG	2 cut(s)	441, 608
BseMII	CTCAG	3 cut(s)	744, 1011, 1206
BseNI	ACTGG	2 cut(s)	511, 644
BseRI	GAGGAG	1 cut(s)	1358
BseXI	GCAGC	2 cut(s)	1282, 1341
BshFI	GGCC	2 cut(s)	879, 1040
BshVI	ATCGAT	1 cut(s)	1618
BsiHKAI	GWGCWC	2 cut(s)	622, 1539
BsiSI	CCGG	2 cut(s)	68, 1025
BslI	CCNNNNNNNGG	3 cut(s)	413, 1024, 1025
BsmAI	GTCTC	2 cut(s)	1108, 1165
BsnI	GGCC	2 cut(s)	879, 1040
Bsp1286I	GDGCHC	2 cut(s)	622, 1539
Bsp13I	TCCGGA	1 cut(s)	67
Bsp143I	GATC	5 cut(s)	327, 664, 826, 1615, 1619
Bsp1720I	GCTNAGC	1 cut(s)	674
BspACI	CCGC	2 cut(s)	284, 407
BspANI	GGCC	2 cut(s)	879, 1040
BspCNI	CTCAG	3 cut(s)	745, 1012, 1207
BspDI	ATCGAT	1 cut(s)	1618
BspEI	TCCGGA	1 cut(s)	67
BspLI	GGNNCC	1 cut(s)	154
BspMAI	CTGCAG	1 cut(s)	1300
BspPI	GGATC	2 cut(s)	821, 1623
BspQI	GCTCTTC	1 cut(s)	69
BsrDI	GCAATG	2 cut(s)	441, 608
BsrI	ACTGG	2 cut(s)	511, 644
BssMI	GATC	5 cut(s)	327, 664, 826, 1615, 1619
BssSI	CACGAG	1 cut(s)	270
Bst2BI	CACGAG	1 cut(s)	270
Bst2UI	CCWGG	1 cut(s)	1335
Bst6I	CTCTTC	2 cut(s)	69, 717
BstDEI	CTNAG	7 cut(s)	623, 674, 753, 1020, 1215, 1457, 1623
BstF5I	GGATG	5 cut(s)	22, 538, 919, 1014, 1225
BstH2I	RGCGCY	2 cut(s)	764, 1390
BstHHI	GCGC	3 cut(s)	763, 1104, 1389
BstKTI	GATC	5 cut(s)	330, 667, 829, 1618, 1622
BstMAI	GTCTC	2 cut(s)	1108, 1165
BstMBI	GATC	5 cut(s)	327, 664, 826, 1615, 1619
BstMWI	GCNNNNNNNGC	3 cut(s)	1046, 1055, 1579
BstNI	CCWGG	1 cut(s)	1335
BstNSI	RCATGY	3 cut(s)	206, 576, 593
BstSCI	CCNGG	2 cut(s)	1024, 1333
BstSFI	CTRYAG	1 cut(s)	1296
BstV1I	GCAGC	2 cut(s)	1282, 1341
BstV2I	GAAGAC	1 cut(s)	165
BstX2I	RGATCY	1 cut(s)	826
BstXI	CCANNNNNNTGG	1 cut(s)	1266
BstYI	RGATCY	1 cut(s)	826
Bsu15I	ATCGAT	1 cut(s)	1618
BsuI	GTATCC	1 cut(s)	188
BsuRI	GGCC	2 cut(s)	879, 1040
BsuTUI	ATCGAT	1 cut(s)	1618
BtsCI	GGATG	5 cut(s)	22, 538, 919, 1014, 1225
BtsIMutI	CAGTG	1 cut(s)	162
CfoI	GCGC	3 cut(s)	763, 1104, 1389
Cfr13I	GGNCC	2 cut(s)	878, 1038
ClaI	ATCGAT	1 cut(s)	1618
CseI	GACGC	1 cut(s)	1587
Csp6I	GTAC	4 cut(s)	417, 587, 1202, 1436
CspCI	CAANNNNNGTGG	2 cut(s)	168, 203
CviAII	CATG	8 cut(s)	203, 281, 454, 464, 573, 590, 788, 994
CviQI	GTAC	4 cut(s)	417, 587, 1202, 1436
DdeI	CTNAG	7 cut(s)	623, 674, 753, 1020, 1215, 1457, 1623
DpnI	GATC	5 cut(s)	329, 666, 828, 1617, 1621
DpnII	GATC	5 cut(s)	327, 664, 826, 1615, 1619
Eam1104I	CTCTTC	2 cut(s)	69, 717
EarI	CTCTTC	2 cut(s)	69, 717
Ecl136II	GAGCTC	1 cut(s)	1537
Eco24I	GRGCYC	1 cut(s)	1539
Eco32I	GATATC	1 cut(s)	639
Eco47III	AGCGCT	1 cut(s)	1388
Eco53kI	GAGCTC	1 cut(s)	1537
Eco57I	CTGAAG	2 cut(s)	761, 1577
EcoICRI	GAGCTC	1 cut(s)	1537
EcoRII	CCWGG	1 cut(s)	1333
EcoRV	GATATC	1 cut(s)	639
EcoT38I	GRGCYC	1 cut(s)	1539
FaeI	CATG	8 cut(s)	206, 284, 457, 467, 576, 593, 791, 997
FalI	AAGNNNNNCTT	2 cut(s)	788, 820
FatI	CATG	8 cut(s)	202, 280, 453, 463, 572, 589, 787, 993
FauI	CCCGC	1 cut(s)	277
FbaI	TGATCA	1 cut(s)	327
Fnu4HI	GCNGC	2 cut(s)	1296, 1355
FokI	GGATG	5 cut(s)	29, 545, 926, 1001, 1232
FriOI	GRGCYC	1 cut(s)	1539
Fsp4HI	GCNGC	2 cut(s)	1296, 1355
FspBI	CTAG	4 cut(s)	614, 831, 1061, 1359
GlaI	GCGC	3 cut(s)	762, 1103, 1388
GluI	GCNGC	2 cut(s)	1296, 1355
GsuI	CTGGAG	1 cut(s)	627
HaeII	RGCGCY	2 cut(s)	764, 1390
HaeIII	GGCC	2 cut(s)	879, 1040
HapII	CCGG	2 cut(s)	68, 1025
HgaI	GACGC	1 cut(s)	1587
HhaI	GCGC	3 cut(s)	763, 1104, 1389
Hin1II	CATG	8 cut(s)	206, 284, 457, 467, 576, 593, 791, 997
Hin6I	GCGC	3 cut(s)	761, 1102, 1387
HinP1I	GCGC	3 cut(s)	761, 1102, 1387
HindIII	AAGCTT	1 cut(s)	500
HinfI	GANTC	3 cut(s)	598, 1184, 1262
HpaII	CCGG	2 cut(s)	68, 1025
HphI	GGTGA	4 cut(s)	299, 427, 674, 1391
Hpy166II	GTNNAC	4 cut(s)	461, 706, 802, 1280
Hpy188I	TCNGA	5 cut(s)	721, 741, 754, 964, 1165
Hpy188III	TCNNGA	6 cut(s)	68, 296, 331, 668, 848, 1312
Hpy8I	GTNNAC	4 cut(s)	461, 706, 802, 1280
Hpy99I	CGWCG	1 cut(s)	52
HpyAV	CCTTC	1 cut(s)	1029
HpyCH4V	TGCA	6 cut(s)	55, 386, 578, 1298, 1328, 1430
HpyF10VI	GCNNNNNNNGC	3 cut(s)	1046, 1055, 1579
HpyF3I	CTNAG	7 cut(s)	623, 674, 753, 1020, 1215, 1457, 1623
Hsp92II	CATG	8 cut(s)	206, 284, 457, 467, 576, 593, 791, 997
HspAI	GCGC	3 cut(s)	761, 1102, 1387
Kpn2I	TCCGGA	1 cut(s)	67
Ksp22I	TGATCA	1 cut(s)	327
Kzo9I	GATC	5 cut(s)	327, 664, 826, 1615, 1619
LguI	GCTCTTC	1 cut(s)	69
Lsp1109I	GCAGC	2 cut(s)	1282, 1341
LweI	GCATC	8 cut(s)	7, 42, 250, 289, 904, 955, 1305, 1417
MaeI	CTAG	4 cut(s)	614, 831, 1061, 1359
MaeIII	GTNAC	5 cut(s)	433, 449, 646, 1250, 1397
MalI	GATC	5 cut(s)	329, 666, 828, 1617, 1621
MboI	GATC	5 cut(s)	327, 664, 826, 1615, 1619
MboII	GAAGA	9 cut(s)	56, 115, 170, 437, 700, 734, 754, 836, 1570
MflI	RGATCY	1 cut(s)	826
MhlI	GDGCHC	2 cut(s)	622, 1539
MluCI	AATT	5 cut(s)	306, 389, 401, 1095, 1235
MlyI	GAGTC	1 cut(s)	607
MmeI	TCCRAC	3 cut(s)	297, 626, 791
MroI	TCCGGA	1 cut(s)	67
MseI	TTAA	4 cut(s)	693, 861, 1148, 1364
MslI	CAYNNNNRTG	1 cut(s)	285
MspI	CCGG	2 cut(s)	68, 1025
MspR9I	CCNGG	2 cut(s)	1026, 1335
MvaI	CCWGG	1 cut(s)	1335
MwoI	GCNNNNNNNGC	3 cut(s)	1046, 1055, 1579
NciI	CCSGG	1 cut(s)	1026
NdeII	GATC	5 cut(s)	327, 664, 826, 1615, 1619
NlaIII	CATG	8 cut(s)	206, 284, 457, 467, 576, 593, 791, 997
NlaIV	GGNNCC	1 cut(s)	154
NmuCI	GTSAC	4 cut(s)	433, 449, 646, 1397
NspI	RCATGY	3 cut(s)	206, 576, 593
PciI	ACATGT	2 cut(s)	572, 589
PciSI	GCTCTTC	1 cut(s)	69
PfeI	GAWTC	2 cut(s)	1184, 1262
PflFI	GACNNNGTC	1 cut(s)	1307
PkrI	GCNGC	2 cut(s)	1297, 1356
PleI	GAGTC	1 cut(s)	606
PpsI	GAGTC	1 cut(s)	606
PscI	ACATGT	2 cut(s)	572, 589
Psp124BI	GAGCTC	1 cut(s)	1539
Psp6I	CCWGG	1 cut(s)	1333
PspGI	CCWGG	1 cut(s)	1333
PspN4I	GGNNCC	1 cut(s)	154
PspPI	GGNCC	2 cut(s)	878, 1038
PstI	CTGCAG	1 cut(s)	1300
PsuI	RGATCY	1 cut(s)	826
PsyI	GACNNNGTC	1 cut(s)	1307
RsaI	GTAC	4 cut(s)	418, 588, 1203, 1437
RsaNI	GTAC	4 cut(s)	417, 587, 1202, 1436
RseI	CAYNNNNRTG	1 cut(s)	285
SacI	GAGCTC	1 cut(s)	1539
SapI	GCTCTTC	1 cut(s)	69
SaqAI	TTAA	4 cut(s)	693, 861, 1148, 1364
SatI	GCNGC	2 cut(s)	1296, 1355
Sau3AI	GATC	5 cut(s)	327, 664, 826, 1615, 1619
Sau96I	GGNCC	2 cut(s)	878, 1038
SchI	GAGTC	1 cut(s)	607
ScrFI	CCNGG	2 cut(s)	1026, 1335
SduI	GDGCHC	2 cut(s)	622, 1539
SfaNI	GCATC	8 cut(s)	7, 42, 250, 289, 904, 955, 1305, 1417
SfcI	CTRYAG	1 cut(s)	1296
SmiMI	CAYNNNNRTG	1 cut(s)	285
SmlI	CTYRAG	4 cut(s)	668, 882, 1382, 1403
SmoI	CTYRAG	4 cut(s)	668, 882, 1382, 1403
Sse9I	AATT	5 cut(s)	306, 389, 401, 1095, 1235
SsiI	CCGC	2 cut(s)	284, 407
SspI	AATATT	3 cut(s)	654, 749, 1009
SspMI	CTAG	4 cut(s)	614, 831, 1061, 1359
SstI	GAGCTC	1 cut(s)	1539
StyD4I	CCNGG	2 cut(s)	1024, 1333
TaqI	TCGA	4 cut(s)	7, 50, 631, 1618
TasI	AATT	5 cut(s)	306, 389, 401, 1095, 1235
TatI	WGTACW	1 cut(s)	1201
TfiI	GAWTC	2 cut(s)	1184, 1262
Tru1I	TTAA	4 cut(s)	693, 861, 1148, 1364
Tru9I	TTAA	4 cut(s)	693, 861, 1148, 1364
TscAI	CASTG	1 cut(s)	169
TseFI	GTSAC	4 cut(s)	433, 449, 646, 1397
TseI	GCWGC	2 cut(s)	1295, 1354
Tsp45I	GTSAC	4 cut(s)	433, 449, 646, 1397
TspGWI	ACGGA	1 cut(s)	197
TspRI	CASTG	1 cut(s)	169
Tth111I	GACNNNGTC	1 cut(s)	1307
XapI	RAATTY	1 cut(s)	401
XceI	RCATGY	3 cut(s)	206, 576, 593
XspI	CTAG	4 cut(s)	614, 831, 1061, 1359

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.