Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0012943

Physical Location & Seq

Genomic Coordinates Reverse (-)

42719393 .. 42723915

Gene Structure 4523 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G019600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2145 bp

ATGTCTCGAGGCAAGGATGGTACGGTTTTGTTGATTGATGTTGGCCCGTCGATGCATAAAGCTCTTCCGGAGATAGAGAAGCTTTGCTCTATGCTAGTGGAGAAGAAGCTCATTTACAGCAAAAGTGATGAAGTAGGAGTTGTTTTGTTCGGCACAGAAGGCACTGAAAATGAGCTAACAAGGGAAGTCGGTGGATATGATCATATAACGGTTTTACAAAATATCAAAGTTGTTGATGAACATCTTATTCAGGCTGTGGAACAACTCCCACGAGGAACTCATAATGGTGATTTTCTTGATGCTGTAATTGTTGGGGTGGATATGCTGATAAAGAAATATGGAGAAACAAACAAAGGAAAGAAACGTCTTTGTCTATTTACGAATGCACACTTCCCTAGTAAAGCTCCAGAAGAAGGAACGAAAGAAGATCAAGTTATCACCATTGCCAGACATATGAATACACAAGGCATGAGATTGGAAAGTATAGTCATAAGAGGAGGGCTTACTGGGGAAGCAAAGAAAAGTATAATGGATGAGAATGATCATCTATTGGATATATTCTCAAAGAGAACATGTGCAAAGTTAGTACATGTTGAGACTCCAACCTCATTGCGAGGCGCTCTTAAAACTCGAAAAGTTTCTCCTGTTACAATATTCAGGGGTGATCTTGAGCTAAGCCCCAAAATGAAGATTAAGGTATGGGTTTACAAGAAAACATCGGAAGACAAGTTTCCCACTCTGAAGAAATATTCTGATAAGGCTGCTCCAACAGATAAATTTGCGACACATGAAGTCAAGGTGGATTTTGAGTATAAGAGTGCTGAAGATCCGAGTAAAGTTGTACCTCCGGAACAGAGGATTAAAGGTTATCGTTATGGACCTCAAGTAATTCCCATATCATCTGCCGAATGGGATGCTGTCAAGTTCAAACCAGAAAAAAGTGTAAAACTTCTGGGATTTTCTGATGCTCAAAATATAATGCGACACTATTACATGAAAGATGTCAACGTTTTCATTCCTGAACCGGGTAATACAAGGGCCATTCTTGCTGTTTCTGCCTTGGCACGAGCAATGAAAGAGAAGAATAAGGTGGCAATTGTGCGCTGTGTTTGGAGACAAGGACAAGCAATTGTTATTGTGGGGGCCTTGACACCTAATGTGTCTGACAACGATAATATTCCTGATTCATTTTACTTCAACGTACTCCCTTTTTCTGAAGATGTTCGAGAATTTCAATTCCCATCTTTCAATAATTTCCCAGCAGCATGGCAACCAAGTGAACAGCAGCAAGAGGCTGCTGATGATTTTGTGAGGATGTTTGATCTTGCTCCATCTGGGAAACGGGAGGTTCTGCCGCCTGACCTAACACCAAATCCTGTTCTTGAGCGGTTTTTTCGTCATCTTGAGTTAAAGTCAAGGGACCCAGATGCAGCTGTACCTCCAATTGATGAAACCCTCAGGAAGATTGGTGAACCAGATAAGGAGCTGATTGCTGAAAACAAGTCTGTTATTGATGTATTCCGTAGTCATTTTGAACTCAAAGAGAATCCAAAGCTGAAGAAATCAAGTAGGCGACTGTTGAAAGAAAAACCATCTGTTTCTGATGAAAGAGAGGATCCTATGGACATTTCTGATCAAACCTACTCCAACGAACATACATCTGGAATTAAGGTTACAAAAATTGGGGATTCTGCTCCTGTCCAGGATTTTGAAGCTATGATGTCCCGTAGAGATAGCCCAGAATGGGTTGGTAAAGCCATCAAGGATATGAAGAACAAAATACACGACTTAGTAGAAGACTCTCACGAAGGGGATAACTATCCTAAAGCACTGGAATGTTTAGTTGCCCTCCGCAAGGGTTGTATCCTAGAGCAAGAACCAAATCAGTTCAATGATTTTCTGCGGTCTCTATGCAAATTCTGCCAGGAGAAGTACCTAAGCAGTTTCTGTGAATTTCTTGCAAACAAGGAACTCACCTTGAATTCCCAAGACAGAAGCTATAGACAGGTTACACATTCTTATGCTCTTCCCTGCCATCAAGTGCTCAGTTTCAACTTTCAAGTAATAAGTCATAGATTAATCTTTGAAGTTACAGATGCTGAAGCTAGAAGTTTTCTGGTCAAATCAGAGCCAAAGTTGGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000723 GO:0000726 GO:0000781 GO:0000784 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006303 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0008150 GO:0008152 GO:0009266 GO:0009408 GO:0009628 GO:0009987 GO:0015074 GO:0016043 GO:0031974 GO:0031981 GO:0032200 GO:0033554 GO:0034641 GO:0042162 GO:0042592 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0050896 GO:0051276 GO:0051716 GO:0060249 GO:0065007 GO:0065008 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:0098687 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03450 map03450

Pfam Domains

Protein Families

Ku Ku_C Ku_N Ku_PK_bind

Protein Analysis

714

Amino Acids

81.04

Weight (kDa)

6.56

Isoelectric Point (pI)

38.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ku_N	PF03731	8 - 140	1e-14	Ku70/Ku80 N-terminal alpha/beta domain
Ku	PF02735	227 - 431	5.9e-44	Ku70/Ku80 beta-barrel domain
Ku_C	PF03730	452 - 530	9.5e-07	Ku70/Ku80 C-terminal arm
Ku_PK_bind	PF08785	566 - 666	1e-29	Ku C terminal domain like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012943)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48050 AT1G48050 AT1G48050
fragaria_vesca	FvH4_7g11900 FvH4_7g11900
malus_domestica	MD07G1121000.v1.1
prunus_persica	Prupe.2G145600_v2.0.a1
pyrus_communis	pycom07g11020
rosa_chinensis	RchiOBHm_Chr1g0350581
rosa_laevigata	RLG00000028472
rosa_multiflora	Rmu_sc0009041.1_g000003
rosa_roxburghii	Rroxscaffold_4G00304720
rosa_rugosa	Rorug01G0212300
rosa_samantha	Rh1AG226800 Rh1BG195500 Rh1CG211600 Rh1DG223500
rosa_wichuraiana	Rw1G019600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	1387
AccIII	TCCGGA	2 cut(s)	67, 847
AciI	CCGC	4 cut(s)	1355, 1387, 1852, 1903
AclI	AACGTT	1 cut(s)	1008
AclWI	GGATC	3 cut(s)	821, 1610, 1623
AcsI	RAATTY	5 cut(s)	776, 1229, 1916, 1952, 1981
AcuI	CTGAAG	5 cut(s)	761, 843, 1236, 1577, 2121
AfaI	GTAC	6 cut(s)	22, 588, 843, 1203, 1437, 1934
AfiI	CCNNNNNNNGG	4 cut(s)	413, 1025, 1744, 1855
AflIII	ACRYGT	2 cut(s)	572, 589
AjnI	CCWGG	2 cut(s)	1701, 1923
Alw21I	GWGCWC	1 cut(s)	2046
Alw26I	GTCTC	4 cut(s)	9, 590, 1108, 1911
AlwI	GGATC	3 cut(s)	821, 1610, 1623
AlwNI	CAGNNNCTG	2 cut(s)	1947, 2099
Ama87I	CYCGRG	1 cut(s)	6
Aor13HI	TCCGGA	2 cut(s)	67, 847
AoxI	GGCC	3 cut(s)	43, 1038, 1143
ApeKI	GCWGC	5 cut(s)	761, 1262, 1285, 1295, 1430
ApoI	RAATTY	5 cut(s)	776, 1229, 1916, 1952, 1981
AseI	ATTAAT	1 cut(s)	2078
Asp700I	GAANNNNTTC	2 cut(s)	637, 1221
AspLEI	GCGC	2 cut(s)	620, 1104
AspS9I	GGNCC	5 cut(s)	44, 878, 1038, 1143, 1420
AsuC2I	CCSGG	1 cut(s)	1026
AsuHPI	GGTGA	5 cut(s)	299, 430, 674, 1481, 1966
AvaI	CYCGRG	1 cut(s)	6
AvaII	GGWCC	2 cut(s)	878, 1420
AxyI	CCTNAGG	1 cut(s)	1457
BamHI	GGATCC	1 cut(s)	1615
BarI	GAAGNNNNNNTAC	2 cut(s)	98, 130
BauI	CACGAG	2 cut(s)	270, 1065
BbsI	GAAGAC	2 cut(s)	729, 1803
Bbv12I	GWGCWC	1 cut(s)	2046
BbvI	GCAGC	5 cut(s)	748, 1274, 1282, 1297, 1442
BccI	CCATC	6 cut(s)	11, 1249, 1339, 1600, 1766, 2043
BcgI	CGANNNNNNTGC	2 cut(s)	896, 930
BciT130I	CCWGG	2 cut(s)	1703, 1925
BciVI	GTATCC	1 cut(s)	1874
BclI	TGATCA	3 cut(s)	199, 541, 1633
BcnI	CCSGG	1 cut(s)	1026
BcoDI	GTCTC	4 cut(s)	9, 590, 1108, 1911
BfaI	CTAG	4 cut(s)	95, 396, 1868, 2106
BfmI	CTRYAG	1 cut(s)	1999
BfoI	RGCGCY	1 cut(s)	621
BfuI	GTATCC	1 cut(s)	1874
BisI	GCNGC	6 cut(s)	762, 1263, 1286, 1296, 1355, 1431
BlpI	GCTNAGC	1 cut(s)	674
BlsI	GCNGC	6 cut(s)	763, 1264, 1287, 1297, 1356, 1432
Bme1390I	CCNGG	3 cut(s)	1026, 1703, 1925
Bme18I	GGWCC	2 cut(s)	878, 1420
BmeT110I	CYCGRG	1 cut(s)	6
BmgT120I	GGNCC	5 cut(s)	44, 878, 1038, 1143, 1420
BmiI	GGNNCC	4 cut(s)	1144, 1421, 1422, 1617
BmrFI	CCNGG	3 cut(s)	1026, 1703, 1925
BmrI	ACTGGG	1 cut(s)	516
BmsI	GCATC	6 cut(s)	42, 289, 904, 955, 1417, 2086
BmuI	ACTGGG	1 cut(s)	516
BpiI	GAAGAC	2 cut(s)	729, 1803
BpmI	CTGGAG	1 cut(s)	390
Bpu10I	CCTNAGC	1 cut(s)	1937
Bpu1102I	GCTNAGC	1 cut(s)	674
BpuEI	CTTGAG	4 cut(s)	689, 867, 1403, 1424
BpuMI	CCSGG	1 cut(s)	1026
BsaBI	GATNNNNATC	2 cut(s)	240, 1818
BsaI	GGTCTC	1 cut(s)	1911
BsaJI	CCNNGG	1 cut(s)	1059
BsaWI	WCCGGW	2 cut(s)	67, 847
Bsc4I	CCNNNNNNNGG	4 cut(s)	413, 1025, 1744, 1855
Bse1I	ACTGG	2 cut(s)	511, 1836
Bse21I	CCTNAGG	1 cut(s)	1457
Bse3DI	GCAATG	3 cut(s)	441, 608, 1077
Bse8I	GATNNNNATC	2 cut(s)	240, 1818
BseAI	TCCGGA	2 cut(s)	67, 847
BseBI	CCWGG	2 cut(s)	1703, 1925
BseDI	CCNNGG	1 cut(s)	1059
BseGI	GGATG	4 cut(s)	22, 538, 919, 1320
BseJI	GATNNNNATC	2 cut(s)	240, 1818
BseLI	CCNNNNNNNGG	4 cut(s)	413, 1025, 1744, 1855
BseMI	GCAATG	3 cut(s)	441, 608, 1077
BseMII	CTCAG	2 cut(s)	1471, 2059
BseNI	ACTGG	2 cut(s)	511, 1836
BseRI	GAGGAG	1 cut(s)	510
BseXI	GCAGC	5 cut(s)	748, 1274, 1282, 1297, 1442
BseYI	CCCAGC	1 cut(s)	1258
BshFI	GGCC	3 cut(s)	45, 1040, 1145
BsiHKAI	GWGCWC	1 cut(s)	2046
BsiHKCI	CYCGRG	1 cut(s)	6
BsiSI	CCGG	3 cut(s)	68, 848, 1025
BslFI	GGGAC	2 cut(s)	1433, 1708
BslI	CCNNNNNNNGG	4 cut(s)	413, 1025, 1744, 1855
BsmAI	GTCTC	4 cut(s)	9, 590, 1108, 1911
BsmFI	GGGAC	2 cut(s)	1433, 1708
BsmI	GAATGC	1 cut(s)	388
BsnI	GGCC	3 cut(s)	45, 1040, 1145
Bso31I	GGTCTC	1 cut(s)	1911
BsoBI	CYCGRG	1 cut(s)	6
Bsp1286I	GDGCHC	1 cut(s)	2046
Bsp13I	TCCGGA	2 cut(s)	67, 847
Bsp143I	GATC	8 cut(s)	199, 427, 541, 664, 826, 1321, 1615, 1633
Bsp1720I	GCTNAGC	1 cut(s)	674
BspACI	CCGC	4 cut(s)	1355, 1387, 1852, 1903
BspANI	GGCC	3 cut(s)	45, 1040, 1145
BspCNI	CTCAG	2 cut(s)	1470, 2058
BspEI	TCCGGA	2 cut(s)	67, 847
BspLI	GGNNCC	4 cut(s)	1144, 1421, 1422, 1617
BspPI	GGATC	3 cut(s)	821, 1610, 1623
BspQI	GCTCTTC	2 cut(s)	69, 2031
BspTNI	GGTCTC	1 cut(s)	1911
BsrBI	CCGCTC	1 cut(s)	1387
BsrDI	GCAATG	3 cut(s)	441, 608, 1077
BsrI	ACTGG	2 cut(s)	511, 1836
BssECI	CCNNGG	1 cut(s)	1059
BssMI	GATC	8 cut(s)	199, 427, 541, 664, 826, 1321, 1615, 1633
BssSI	CACGAG	2 cut(s)	270, 1065
BssT1I	CCWWGG	1 cut(s)	1059
Bst2BI	CACGAG	2 cut(s)	270, 1065
Bst2UI	CCWGG	2 cut(s)	1703, 1925
Bst4CI	ACNGT	3 cut(s)	25, 211, 1578
Bst6I	CTCTTC	2 cut(s)	69, 2031
BstAPI	GCANNNNNTGC	1 cut(s)	1920
BstDEI	CTNAG	5 cut(s)	674, 1457, 1789, 1937, 2045
BstENI	CCTNNNNNAGG	1 cut(s)	1853
BstF5I	GGATG	4 cut(s)	22, 538, 919, 1320
BstH2I	RGCGCY	1 cut(s)	621
BstHHI	GCGC	2 cut(s)	620, 1104
BstKTI	GATC	8 cut(s)	202, 430, 544, 667, 829, 1324, 1618, 1636
BstMAI	GTCTC	4 cut(s)	9, 590, 1108, 1911
BstMBI	GATC	8 cut(s)	199, 427, 541, 664, 826, 1321, 1615, 1633
BstMWI	GCNNNNNNNGC	4 cut(s)	159, 1046, 1055, 1920
BstNI	CCWGG	2 cut(s)	1703, 1925
BstNSI	RCATGY	2 cut(s)	576, 593
BstSCI	CCNGG	3 cut(s)	1024, 1701, 1923
BstSFI	CTRYAG	1 cut(s)	1999
BstV1I	GCAGC	5 cut(s)	748, 1274, 1282, 1297, 1442
BstV2I	GAAGAC	2 cut(s)	729, 1803
BstX2I	RGATCY	2 cut(s)	826, 1615
BstXI	CCANNNNNNTGG	1 cut(s)	1266
BstYI	RGATCY	2 cut(s)	826, 1615
Bsu36I	CCTNAGG	1 cut(s)	1457
BsuI	GTATCC	1 cut(s)	1874
BsuRI	GGCC	3 cut(s)	45, 1040, 1145
BtsCI	GGATG	4 cut(s)	22, 538, 919, 1320
BtsIMutI	CAGTG	2 cut(s)	162, 1829
CaiI	CAGNNNCTG	2 cut(s)	1947, 2099
CfoI	GCGC	2 cut(s)	620, 1104
Cfr13I	GGNCC	5 cut(s)	44, 878, 1038, 1143, 1420
Csp6I	GTAC	6 cut(s)	21, 587, 842, 1202, 1436, 1933
CviAII	CATG	6 cut(s)	469, 573, 590, 788, 994, 1266
CviQI	GTAC	6 cut(s)	21, 587, 842, 1202, 1436, 1933
DdeI	CTNAG	5 cut(s)	674, 1457, 1789, 1937, 2045
DpnI	GATC	8 cut(s)	201, 429, 543, 666, 828, 1323, 1617, 1635
DpnII	GATC	8 cut(s)	199, 427, 541, 664, 826, 1321, 1615, 1633
Eam1104I	CTCTTC	2 cut(s)	69, 2031
EarI	CTCTTC	2 cut(s)	69, 2031
Eco130I	CCWWGG	1 cut(s)	1059
Eco31I	GGTCTC	1 cut(s)	1911
Eco47I	GGWCC	2 cut(s)	878, 1420
Eco57I	CTGAAG	5 cut(s)	761, 843, 1236, 1577, 2121
Eco81I	CCTNAGG	1 cut(s)	1457
Eco88I	CYCGRG	1 cut(s)	6
EcoNI	CCTNNNNNAGG	1 cut(s)	1853
EcoO109I	RGGNCCY	2 cut(s)	1143, 1420
EcoRI	GAATTC	1 cut(s)	1981
EcoRII	CCWGG	2 cut(s)	1701, 1923
EcoT14I	CCWWGG	1 cut(s)	1059
EcoT22I	ATGCAT	1 cut(s)	57
ErhI	CCWWGG	1 cut(s)	1059
FaeI	CATG	6 cut(s)	472, 576, 593, 791, 997, 1269
FaqI	GGGAC	2 cut(s)	1433, 1708
FatI	CATG	6 cut(s)	468, 572, 589, 787, 993, 1265
FauNDI	CATATG	1 cut(s)	453
FbaI	TGATCA	3 cut(s)	199, 541, 1633
Fnu4HI	GCNGC	6 cut(s)	762, 1263, 1286, 1296, 1355, 1431
FokI	GGATG	4 cut(s)	29, 545, 926, 1327
Fsp4HI	GCNGC	6 cut(s)	762, 1263, 1286, 1296, 1355, 1431
FspBI	CTAG	4 cut(s)	95, 396, 1868, 2106
GlaI	GCGC	2 cut(s)	619, 1103
GluI	GCNGC	6 cut(s)	762, 1263, 1286, 1296, 1355, 1431
GsaI	CCCAGC	1 cut(s)	1262
GsuI	CTGGAG	1 cut(s)	390
HaeII	RGCGCY	1 cut(s)	621
HaeIII	GGCC	3 cut(s)	45, 1040, 1145
HapII	CCGG	3 cut(s)	68, 848, 1025
HhaI	GCGC	2 cut(s)	620, 1104
Hin1II	CATG	6 cut(s)	472, 576, 593, 791, 997, 1269
Hin6I	GCGC	2 cut(s)	618, 1102
HinP1I	GCGC	2 cut(s)	618, 1102
HincII	GTYRAC	1 cut(s)	1006
HindII	GTYRAC	1 cut(s)	1006
HindIII	AAGCTT	1 cut(s)	80
HinfI	GANTC	5 cut(s)	598, 1184, 1546, 1688, 1799
HpaII	CCGG	3 cut(s)	68, 848, 1025
HphI	GGTGA	5 cut(s)	299, 430, 674, 1481, 1966
Hpy166II	GTNNAC	4 cut(s)	706, 1006, 1280, 1472
Hpy8I	GTNNAC	4 cut(s)	706, 1006, 1280, 1472
Hpy99I	CGWCG	1 cut(s)	52
HpyAV	CCTTC	3 cut(s)	152, 407, 1802
HpyCH4III	ACNGT	3 cut(s)	25, 211, 1578
HpyCH4IV	ACGT	3 cut(s)	364, 1008, 1200
HpyCH4V	TGCA	6 cut(s)	55, 386, 578, 1430, 1914, 1961
HpyF10VI	GCNNNNNNNGC	4 cut(s)	159, 1046, 1055, 1920
HpyF3I	CTNAG	5 cut(s)	674, 1457, 1789, 1937, 2045
HpySE526I	ACGT	3 cut(s)	364, 1008, 1200
Hsp92II	CATG	6 cut(s)	472, 576, 593, 791, 997, 1269
HspAI	GCGC	2 cut(s)	618, 1102
KflI	GGGWCCC	1 cut(s)	1420
Kpn2I	TCCGGA	2 cut(s)	67, 847
Ksp22I	TGATCA	3 cut(s)	199, 541, 1633
Kzo9I	GATC	8 cut(s)	199, 427, 541, 664, 826, 1321, 1615, 1633
LguI	GCTCTTC	2 cut(s)	69, 2031
LmnI	GCTCC	5 cut(s)	409, 769, 1333, 1483, 1699
Lsp1109I	GCAGC	5 cut(s)	748, 1274, 1282, 1297, 1442
LweI	GCATC	6 cut(s)	42, 289, 904, 955, 1417, 2086
MaeI	CTAG	4 cut(s)	95, 396, 1868, 2106
MaeII	ACGT	3 cut(s)	364, 1008, 1200
MaeIII	GTNAC	4 cut(s)	646, 1672, 2008, 2089
MalI	GATC	8 cut(s)	201, 429, 543, 666, 828, 1323, 1617, 1635
MbiI	CCGCTC	1 cut(s)	1387
MboI	GATC	8 cut(s)	199, 427, 541, 664, 826, 1321, 1615, 1633
MfeI	CAATTG	3 cut(s)	1095, 1128, 1443
MflI	RGATCY	2 cut(s)	826, 1615
MhlI	GDGCHC	1 cut(s)	2046
MlyI	GAGTC	2 cut(s)	592, 1793
MmeI	TCCRAC	4 cut(s)	626, 791, 1671, 2118
Mph1103I	ATGCAT	1 cut(s)	57
MroI	TCCGGA	2 cut(s)	67, 847
MroXI	GAANNNNTTC	2 cut(s)	637, 1221
MseI	TTAA	6 cut(s)	624, 693, 861, 1409, 1668, 2078
MslI	CAYNNNNRTG	3 cut(s)	285, 1834, 2019
MspA1I	CMGCKG	1 cut(s)	1433
MspI	CCGG	3 cut(s)	68, 848, 1025
MspR9I	CCNGG	3 cut(s)	1026, 1703, 1925
MunI	CAATTG	3 cut(s)	1095, 1128, 1443
Mva1269I	GAATGC	1 cut(s)	388
MvaI	CCWGG	2 cut(s)	1703, 1925
MwoI	GCNNNNNNNGC	4 cut(s)	159, 1046, 1055, 1920
NciI	CCSGG	1 cut(s)	1026
NdeI	CATATG	1 cut(s)	453
NdeII	GATC	8 cut(s)	199, 427, 541, 664, 826, 1321, 1615, 1633
NlaIII	CATG	6 cut(s)	472, 576, 593, 791, 997, 1269
NlaIV	GGNNCC	4 cut(s)	1144, 1421, 1422, 1617
NsiI	ATGCAT	1 cut(s)	57
NspI	RCATGY	2 cut(s)	576, 593
PaeR7I	CTCGAG	1 cut(s)	6
PciI	ACATGT	2 cut(s)	572, 589
PciSI	GCTCTTC	2 cut(s)	69, 2031
PctI	GAATGC	1 cut(s)	388
PdmI	GAANNNNTTC	2 cut(s)	637, 1221
PfeI	GAWTC	3 cut(s)	1184, 1546, 1688
PfoI	TCCNGGA	1 cut(s)	1701
PkrI	GCNGC	6 cut(s)	763, 1264, 1287, 1297, 1356, 1432
PleI	GAGTC	2 cut(s)	592, 1793
PpsI	GAGTC	2 cut(s)	592, 1793
PpuMI	RGGWCCY	1 cut(s)	1420
PscI	ACATGT	2 cut(s)	572, 589
PshBI	ATTAAT	1 cut(s)	2078
Psp1406I	AACGTT	1 cut(s)	1008
Psp5II	RGGWCCY	1 cut(s)	1420
Psp6I	CCWGG	2 cut(s)	1701, 1923
PspFI	CCCAGC	1 cut(s)	1258
PspGI	CCWGG	2 cut(s)	1701, 1923
PspN4I	GGNNCC	4 cut(s)	1144, 1421, 1422, 1617
PspPI	GGNCC	5 cut(s)	44, 878, 1038, 1143, 1420
PspPPI	RGGWCCY	1 cut(s)	1420
PstNI	CAGNNNCTG	2 cut(s)	1947, 2099
PsuI	RGATCY	2 cut(s)	826, 1615
PvuII	CAGCTG	1 cut(s)	1433
RsaI	GTAC	6 cut(s)	22, 588, 843, 1203, 1437, 1934
RsaNI	GTAC	6 cut(s)	21, 587, 842, 1202, 1436, 1933
RseI	CAYNNNNRTG	3 cut(s)	285, 1834, 2019
SapI	GCTCTTC	2 cut(s)	69, 2031
SaqAI	TTAA	6 cut(s)	624, 693, 861, 1409, 1668, 2078
SatI	GCNGC	6 cut(s)	762, 1263, 1286, 1296, 1355, 1431
Sau3AI	GATC	8 cut(s)	199, 427, 541, 664, 826, 1321, 1615, 1633
Sau96I	GGNCC	5 cut(s)	44, 878, 1038, 1143, 1420
SchI	GAGTC	2 cut(s)	592, 1793
ScrFI	CCNGG	3 cut(s)	1026, 1703, 1925
SduI	GDGCHC	1 cut(s)	2046
SfaNI	GCATC	6 cut(s)	42, 289, 904, 955, 1417, 2086
SfcI	CTRYAG	1 cut(s)	1999
Sfr274I	CTCGAG	1 cut(s)	6
SinI	GGWCC	2 cut(s)	878, 1420
SlaI	CTCGAG	1 cut(s)	6
SmiMI	CAYNNNNRTG	3 cut(s)	285, 1834, 2019
SmlI	CTYRAG	5 cut(s)	6, 668, 882, 1382, 1403
SmoI	CTYRAG	5 cut(s)	6, 668, 882, 1382, 1403
SsiI	CCGC	4 cut(s)	1355, 1387, 1852, 1903
SspI	AATATT	3 cut(s)	654, 749, 1177
SspMI	CTAG	4 cut(s)	95, 396, 1868, 2106
StyD4I	CCNGG	3 cut(s)	1024, 1701, 1923
StyI	CCWWGG	1 cut(s)	1059
TaaI	ACNGT	3 cut(s)	25, 211, 1578
TaiI	ACGT	3 cut(s)	367, 1011, 1203
TaqI	TCGA	4 cut(s)	7, 50, 631, 1225
TatI	WGTACW	1 cut(s)	586
TauI	GCSGC	1 cut(s)	1357
TfiI	GAWTC	3 cut(s)	1184, 1546, 1688
Tru1I	TTAA	6 cut(s)	624, 693, 861, 1409, 1668, 2078
Tru9I	TTAA	6 cut(s)	624, 693, 861, 1409, 1668, 2078
TscAI	CASTG	2 cut(s)	169, 1836
TseI	GCWGC	5 cut(s)	761, 1262, 1285, 1295, 1430
TspGWI	ACGGA	1 cut(s)	1511
TspRI	CASTG	2 cut(s)	169, 1836
VpaK11BI	GGWCC	2 cut(s)	878, 1420
VspI	ATTAAT	1 cut(s)	2078
XagI	CCTNNNNNAGG	1 cut(s)	1853
XapI	RAATTY	5 cut(s)	776, 1229, 1916, 1952, 1981
XceI	RCATGY	2 cut(s)	576, 593
XhoI	CTCGAG	1 cut(s)	6
XmnI	GAANNNNTTC	2 cut(s)	637, 1221
XspI	CTAG	4 cut(s)	95, 396, 1868, 2106
Zsp2I	ATGCAT	1 cut(s)	57

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.