Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0012943

Physical Location & Seq

Genomic Coordinates Reverse (-)

43715448 .. 43717986

Gene Structure 2539 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ57643

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1149 bp

ATGTCTCGAGGCAAGGATGGTACGGTTTTGTTGATTGATGTTGGCCCGTCGATGCATAAAGCTCTTCCGGAGATAGAGAAGCTTTGCTCTATGCTGGTGGAGAAGAAGCTCATTTACAGCAAAAGTGATGAAGTCGGAGTTGTTTTGTTCGGCACAGAAGGCACTGAAAATGAGCTAACAAGGGAAGTCGGTGGATATGATCATATAACGGTTTTACAAAATATCAAAGTTGTTGATGAACATCTTATTCGGGCTGTGGAACAACTCCCACGAGGAACTCATAACGGTGATTTTCTTGATGCTGTAATTGTTGGGATGGATATGCTGATAAAGAAATATGGAGAAACAAACAAAGGAAAAAAACGTCTTTGTCTATTTACGAATGCACACTTCCCCACTAAAGCTCCACAAGATGGAACTAAAGAAGATCAAGTTATCACCATTGCCAGACATATGAATACGCAAGGTATGAGATTGGAAAGTATAGTCATAAGAGGAGGGCTTACTGGGGAAGCTAAGAAAAGTATAATGGATGAGAATGATCATCTATTGGATATATTCTCAAAGAGAACATGTGCAAAGTTGGTACATGTTGAGACTCCAACCTCATTGCTAGGTGCTCTTAAAACTCGAAAAGTTTCTCCTGTTACAATATTCAGGGGTGATCTTGAGCTGAGCCCCAAAATGAAGATTAAGGTATGGGTTTACAAGAAAACATCCGAAGACAAGTTTCCCACTCTGAAGAAATATTCTGATAAAGCCGCTCCAACAGATAAATTTGCGACACATGAAGTCAAGGTGGATTTTGAGTATAAGAGTGCTGAAGATCTGAGTAAAGTTGTACCTCCAGAACAGAGGATTAAAGGTTATCGTTATGGACCTCAAGTAATTCCCATATCATCTGCTGAATGGGATGCTGTCAAGTTCAAACCAGAAAAAAGTGTGAAACTTCTGGGATTTTCTGATGCTCAAAATATAATGCGACACTATTACATGAAAGATGTCAACGTTTTCATTCCTGAACCGGGTAATACAAGGGCCATTCTTGCTGTTTCTGCCTTGGCACGAGCAATGAAAGATAAGAATAAGGTGGCAATTGTGCGCTGTGTTTGGAGACAAGGACAAGCAAGTGTTATTGTGGGGCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000723 GO:0000726 GO:0000781 GO:0000784 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006303 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0008150 GO:0008152 GO:0009266 GO:0009408 GO:0009628 GO:0009987 GO:0015074 GO:0016043 GO:0031974 GO:0031981 GO:0032200 GO:0033554 GO:0034641 GO:0042162 GO:0042592 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0050896 GO:0051276 GO:0051716 GO:0060249 GO:0065007 GO:0065008 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:0098687 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03450 map03450

Pfam Domains

Protein Families

Ku Ku_C Ku_N Ku_PK_bind

Protein Analysis

382

Amino Acids

42.75

Weight (kDa)

9.28

Isoelectric Point (pI)

27.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ku_N	PF03731	8 - 158	1e-15	Ku70/Ku80 N-terminal alpha/beta domain
Ku	PF02735	227 - 378	6e-34	Ku70/Ku80 beta-barrel domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012943)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48050 AT1G48050 AT1G48050
fragaria_vesca	FvH4_7g11900 FvH4_7g11900
malus_domestica	MD07G1121000.v1.1
prunus_persica	Prupe.2G145600_v2.0.a1
pyrus_communis	pycom07g11020
rosa_chinensis	RchiOBHm_Chr1g0350581
rosa_laevigata	RLG00000028472
rosa_multiflora	Rmu_sc0009041.1_g000003
rosa_roxburghii	Rroxscaffold_4G00304720
rosa_rugosa	Rorug01G0212300
rosa_samantha	Rh1AG226800 Rh1BG195500 Rh1CG211600 Rh1DG223500
rosa_wichuraiana	Rw1G019600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	413
AccBSI	CCGCTC	1 cut(s)	764
AccIII	TCCGGA	1 cut(s)	67
AciI	CCGC	1 cut(s)	762
AclI	AACGTT	1 cut(s)	1008
AcsI	RAATTY	1 cut(s)	776
AcuI	CTGAAG	2 cut(s)	761, 843
AfaI	GTAC	3 cut(s)	22, 588, 843
AfiI	CCNNNNNNNGG	2 cut(s)	413, 1025
AflIII	ACRYGT	2 cut(s)	572, 589
AgsI	TTSAA	1 cut(s)	928
AluBI	AGCT	7 cut(s)	62, 82, 109, 175, 404, 515, 673
AluI	AGCT	7 cut(s)	62, 82, 109, 175, 404, 515, 673
Alw21I	GWGCWC	1 cut(s)	622
Alw26I	GTCTC	3 cut(s)	9, 590, 1108
Ama87I	CYCGRG	1 cut(s)	6
Aor13HI	TCCGGA	1 cut(s)	67
AoxI	GGCC	3 cut(s)	43, 1038, 1142
ApoI	RAATTY	1 cut(s)	776
Asp700I	GAANNNNTTC	1 cut(s)	637
AspLEI	GCGC	1 cut(s)	1104
AspS9I	GGNCC	4 cut(s)	44, 878, 1038, 1142
AsuC2I	CCSGG	1 cut(s)	1026
AsuHPI	GGTGA	3 cut(s)	299, 430, 674
AvaI	CYCGRG	1 cut(s)	6
AvaII	GGWCC	1 cut(s)	878
BanII	GRGCYC	1 cut(s)	680
BarI	GAAGNNNNNNTAC	2 cut(s)	98, 130
BauI	CACGAG	2 cut(s)	270, 1065
BbsI	GAAGAC	1 cut(s)	729
Bbv12I	GWGCWC	1 cut(s)	622
BccI	CCATC	3 cut(s)	11, 310, 407
BclI	TGATCA	2 cut(s)	199, 541
BcnI	CCSGG	1 cut(s)	1026
BcoDI	GTCTC	3 cut(s)	9, 590, 1108
BfaI	CTAG	1 cut(s)	614
BglII	AGATCT	1 cut(s)	826
BisI	GCNGC	1 cut(s)	762
BlpI	GCTNAGC	1 cut(s)	674
BlsI	GCNGC	1 cut(s)	763
Bme1390I	CCNGG	1 cut(s)	1026
Bme18I	GGWCC	1 cut(s)	878
BmeT110I	CYCGRG	1 cut(s)	6
BmgT120I	GGNCC	4 cut(s)	44, 878, 1038, 1142
BmiI	GGNNCC	1 cut(s)	1143
BmrFI	CCNGG	1 cut(s)	1026
BmrI	ACTGGG	1 cut(s)	516
BmsI	GCATC	4 cut(s)	42, 289, 904, 955
BmuI	ACTGGG	1 cut(s)	516
BpiI	GAAGAC	1 cut(s)	729
BpmI	CTGGAG	1 cut(s)	831
Bpu1102I	GCTNAGC	1 cut(s)	674
BpuEI	CTTGAG	2 cut(s)	689, 867
BpuMI	CCSGG	1 cut(s)	1026
BsaBI	GATNNNNATC	1 cut(s)	240
BsaJI	CCNNGG	1 cut(s)	1059
BsaWI	WCCGGW	1 cut(s)	67
BsaXI	ACNNNNNCTCC	2 cut(s)	388, 418
Bsc4I	CCNNNNNNNGG	2 cut(s)	413, 1025
Bse1I	ACTGG	1 cut(s)	511
Bse3DI	GCAATG	3 cut(s)	441, 608, 1077
Bse8I	GATNNNNATC	1 cut(s)	240
BseAI	TCCGGA	1 cut(s)	67
BseDI	CCNNGG	1 cut(s)	1059
BseGI	GGATG	5 cut(s)	22, 321, 538, 716, 919
BseJI	GATNNNNATC	1 cut(s)	240
BseLI	CCNNNNNNNGG	2 cut(s)	413, 1025
BseMI	GCAATG	3 cut(s)	441, 608, 1077
BseMII	CTCAG	2 cut(s)	665, 821
BseNI	ACTGG	1 cut(s)	511
BseRI	GAGGAG	1 cut(s)	510
BshFI	GGCC	3 cut(s)	45, 1040, 1144
BsiHKAI	GWGCWC	1 cut(s)	622
BsiHKCI	CYCGRG	1 cut(s)	6
BsiSI	CCGG	2 cut(s)	68, 1025
BslI	CCNNNNNNNGG	2 cut(s)	413, 1025
BsmAI	GTCTC	3 cut(s)	9, 590, 1108
BsmI	GAATGC	1 cut(s)	388
BsnI	GGCC	3 cut(s)	45, 1040, 1144
BsoBI	CYCGRG	1 cut(s)	6
Bsp1286I	GDGCHC	2 cut(s)	622, 680
Bsp13I	TCCGGA	1 cut(s)	67
Bsp143I	GATC	5 cut(s)	199, 427, 541, 664, 826
Bsp1720I	GCTNAGC	1 cut(s)	674
BspACI	CCGC	1 cut(s)	762
BspANI	GGCC	3 cut(s)	45, 1040, 1144
BspCNI	CTCAG	2 cut(s)	666, 822
BspEI	TCCGGA	1 cut(s)	67
BspLI	GGNNCC	1 cut(s)	1143
BspQI	GCTCTTC	1 cut(s)	69
BsrBI	CCGCTC	1 cut(s)	764
BsrDI	GCAATG	3 cut(s)	441, 608, 1077
BsrI	ACTGG	1 cut(s)	511
BssECI	CCNNGG	1 cut(s)	1059
BssMI	GATC	5 cut(s)	199, 427, 541, 664, 826
BssSI	CACGAG	2 cut(s)	270, 1065
BssT1I	CCWWGG	1 cut(s)	1059
Bst2BI	CACGAG	2 cut(s)	270, 1065
Bst4CI	ACNGT	3 cut(s)	25, 211, 287
Bst6I	CTCTTC	1 cut(s)	69
BstDEI	CTNAG	3 cut(s)	516, 674, 830
BstF5I	GGATG	5 cut(s)	22, 321, 538, 716, 919
BstHHI	GCGC	1 cut(s)	1104
BstKTI	GATC	5 cut(s)	202, 430, 544, 667, 829
BstMAI	GTCTC	3 cut(s)	9, 590, 1108
BstMBI	GATC	5 cut(s)	199, 427, 541, 664, 826
BstMWI	GCNNNNNNNGC	3 cut(s)	159, 1046, 1055
BstNSI	RCATGY	2 cut(s)	576, 593
BstSCI	CCNGG	1 cut(s)	1024
BstV2I	GAAGAC	1 cut(s)	729
BstX2I	RGATCY	1 cut(s)	826
BstYI	RGATCY	1 cut(s)	826
BsuRI	GGCC	3 cut(s)	45, 1040, 1144
BtsCI	GGATG	5 cut(s)	22, 321, 538, 716, 919
BtsIMutI	CAGTG	1 cut(s)	162
CfoI	GCGC	1 cut(s)	1104
Cfr13I	GGNCC	4 cut(s)	44, 878, 1038, 1142
Csp6I	GTAC	3 cut(s)	21, 587, 842
CviAII	CATG	4 cut(s)	573, 590, 788, 994
CviQI	GTAC	3 cut(s)	21, 587, 842
DdeI	CTNAG	3 cut(s)	516, 674, 830
DpnI	GATC	5 cut(s)	201, 429, 543, 666, 828
DpnII	GATC	5 cut(s)	199, 427, 541, 664, 826
Eam1104I	CTCTTC	1 cut(s)	69
EarI	CTCTTC	1 cut(s)	69
Eco130I	CCWWGG	1 cut(s)	1059
Eco24I	GRGCYC	1 cut(s)	680
Eco47I	GGWCC	1 cut(s)	878
Eco57I	CTGAAG	2 cut(s)	761, 843
Eco88I	CYCGRG	1 cut(s)	6
EcoO109I	RGGNCCY	1 cut(s)	1142
EcoT14I	CCWWGG	1 cut(s)	1059
EcoT22I	ATGCAT	1 cut(s)	57
EcoT38I	GRGCYC	1 cut(s)	680
ErhI	CCWWGG	1 cut(s)	1059
FaeI	CATG	4 cut(s)	576, 593, 791, 997
FatI	CATG	4 cut(s)	572, 589, 787, 993
FauNDI	CATATG	1 cut(s)	453
FbaI	TGATCA	2 cut(s)	199, 541
Fnu4HI	GCNGC	1 cut(s)	762
FokI	GGATG	5 cut(s)	29, 328, 545, 703, 926
FriOI	GRGCYC	1 cut(s)	680
Fsp4HI	GCNGC	1 cut(s)	762
FspBI	CTAG	1 cut(s)	614
GlaI	GCGC	1 cut(s)	1103
GluI	GCNGC	1 cut(s)	762
GsuI	CTGGAG	1 cut(s)	831
HaeIII	GGCC	3 cut(s)	45, 1040, 1144
HapII	CCGG	2 cut(s)	68, 1025
HhaI	GCGC	1 cut(s)	1104
Hin1II	CATG	4 cut(s)	576, 593, 791, 997
Hin6I	GCGC	1 cut(s)	1102
HinP1I	GCGC	1 cut(s)	1102
HincII	GTYRAC	1 cut(s)	1006
HindII	GTYRAC	1 cut(s)	1006
HindIII	AAGCTT	1 cut(s)	80
HinfI	GANTC	1 cut(s)	598
HpaII	CCGG	2 cut(s)	68, 1025
HphI	GGTGA	3 cut(s)	299, 430, 674
Hpy166II	GTNNAC	2 cut(s)	706, 1006
Hpy188I	TCNGA	6 cut(s)	137, 721, 741, 754, 831, 964
Hpy188III	TCNNGA	6 cut(s)	6, 68, 296, 668, 848, 1019
Hpy8I	GTNNAC	2 cut(s)	706, 1006
Hpy99I	CGWCG	1 cut(s)	52
HpyAV	CCTTC	1 cut(s)	152
HpyCH4III	ACNGT	3 cut(s)	25, 211, 287
HpyCH4IV	ACGT	2 cut(s)	364, 1008
HpyCH4V	TGCA	3 cut(s)	55, 386, 578
HpyF10VI	GCNNNNNNNGC	3 cut(s)	159, 1046, 1055
HpyF3I	CTNAG	3 cut(s)	516, 674, 830
HpySE526I	ACGT	2 cut(s)	364, 1008
Hsp92II	CATG	4 cut(s)	576, 593, 791, 997
HspAI	GCGC	1 cut(s)	1102
Kpn2I	TCCGGA	1 cut(s)	67
Ksp22I	TGATCA	2 cut(s)	199, 541
Kzo9I	GATC	5 cut(s)	199, 427, 541, 664, 826
LguI	GCTCTTC	1 cut(s)	69
LmnI	GCTCC	2 cut(s)	409, 769
LweI	GCATC	4 cut(s)	42, 289, 904, 955
MaeI	CTAG	1 cut(s)	614
MaeII	ACGT	2 cut(s)	364, 1008
MaeIII	GTNAC	1 cut(s)	646
MalI	GATC	5 cut(s)	201, 429, 543, 666, 828
MbiI	CCGCTC	1 cut(s)	764
MboI	GATC	5 cut(s)	199, 427, 541, 664, 826
MboII	GAAGA	7 cut(s)	56, 115, 437, 700, 734, 754, 836
MfeI	CAATTG	1 cut(s)	1095
MflI	RGATCY	1 cut(s)	826
MhlI	GDGCHC	2 cut(s)	622, 680
MluCI	AATT	4 cut(s)	306, 776, 888, 1095
MlyI	GAGTC	1 cut(s)	592
MmeI	TCCRAC	3 cut(s)	115, 626, 791
MnlI	CCTC	7 cut(s)	266, 488, 491, 616, 849, 855, 891
Mph1103I	ATGCAT	1 cut(s)	57
MroI	TCCGGA	1 cut(s)	67
MroXI	GAANNNNTTC	1 cut(s)	637
MseI	TTAA	3 cut(s)	624, 693, 861
MslI	CAYNNNNRTG	1 cut(s)	285
MspI	CCGG	2 cut(s)	68, 1025
MspR9I	CCNGG	1 cut(s)	1026
MunI	CAATTG	1 cut(s)	1095
Mva1269I	GAATGC	1 cut(s)	388
MwoI	GCNNNNNNNGC	3 cut(s)	159, 1046, 1055
NciI	CCSGG	1 cut(s)	1026
NdeI	CATATG	1 cut(s)	453
NdeII	GATC	5 cut(s)	199, 427, 541, 664, 826
NlaIII	CATG	4 cut(s)	576, 593, 791, 997
NlaIV	GGNNCC	1 cut(s)	1143
NsiI	ATGCAT	1 cut(s)	57
NspI	RCATGY	2 cut(s)	576, 593
PaeR7I	CTCGAG	1 cut(s)	6
PciI	ACATGT	2 cut(s)	572, 589
PciSI	GCTCTTC	1 cut(s)	69
PctI	GAATGC	1 cut(s)	388
PdmI	GAANNNNTTC	1 cut(s)	637
PflMI	CCANNNNNTGG	1 cut(s)	413
PkrI	GCNGC	1 cut(s)	763
PleI	GAGTC	1 cut(s)	592
PpsI	GAGTC	1 cut(s)	592
PscI	ACATGT	2 cut(s)	572, 589
Psp1406I	AACGTT	1 cut(s)	1008
PspN4I	GGNNCC	1 cut(s)	1143
PspPI	GGNCC	4 cut(s)	44, 878, 1038, 1142
PsuI	RGATCY	1 cut(s)	826
RsaI	GTAC	3 cut(s)	22, 588, 843
RsaNI	GTAC	3 cut(s)	21, 587, 842
RseI	CAYNNNNRTG	1 cut(s)	285
SapI	GCTCTTC	1 cut(s)	69
SaqAI	TTAA	3 cut(s)	624, 693, 861
SatI	GCNGC	1 cut(s)	762
Sau3AI	GATC	5 cut(s)	199, 427, 541, 664, 826
Sau96I	GGNCC	4 cut(s)	44, 878, 1038, 1142
SchI	GAGTC	1 cut(s)	592
ScrFI	CCNGG	1 cut(s)	1026
SduI	GDGCHC	2 cut(s)	622, 680
SfaNI	GCATC	4 cut(s)	42, 289, 904, 955
Sfr274I	CTCGAG	1 cut(s)	6
SinI	GGWCC	1 cut(s)	878
SlaI	CTCGAG	1 cut(s)	6
SmiMI	CAYNNNNRTG	1 cut(s)	285
SmlI	CTYRAG	3 cut(s)	6, 668, 882
SmoI	CTYRAG	3 cut(s)	6, 668, 882
Sse9I	AATT	4 cut(s)	306, 776, 888, 1095
SsiI	CCGC	1 cut(s)	762
SspI	AATATT	2 cut(s)	654, 749
SspMI	CTAG	1 cut(s)	614
StyD4I	CCNGG	1 cut(s)	1024
StyI	CCWWGG	1 cut(s)	1059
TaaI	ACNGT	3 cut(s)	25, 211, 287
TaiI	ACGT	2 cut(s)	367, 1011
TaqI	TCGA	3 cut(s)	7, 50, 631
TasI	AATT	4 cut(s)	306, 776, 888, 1095
TauI	GCSGC	1 cut(s)	764
Tru1I	TTAA	3 cut(s)	624, 693, 861
Tru9I	TTAA	3 cut(s)	624, 693, 861
TscAI	CASTG	1 cut(s)	169
TspDTI	ATGAA	8 cut(s)	144, 252, 470, 701, 804, 1003, 1010, 1088
TspRI	CASTG	1 cut(s)	169
Van91I	CCANNNNNTGG	1 cut(s)	413
VpaK11BI	GGWCC	1 cut(s)	878
XapI	RAATTY	1 cut(s)	776
XceI	RCATGY	2 cut(s)	576, 593
XhoI	CTCGAG	1 cut(s)	6
XmnI	GAANNNNTTC	1 cut(s)	637
XspI	CTAG	1 cut(s)	614
Zsp2I	ATGCAT	1 cut(s)	57

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.