Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0012943

Physical Location & Seq

Genomic Coordinates Reverse (-)

30150968 .. 30152725

Gene Structure 1758 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0212300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1431 bp

ATGTTCAACGGGATGAATATGATGGATCCAGAATTGATGAAACTTGCTCAGGAGCAGATGAGTCGGATGTCACCGGTTGATTTCGCCAGGATTCAACAACAGATGATAGCTAATCCAGAATTGATGAAGATGGCATCAGAGAGCATGAAGAATTTGAGGCCTGAAGATTTGAAACTGGCTGCAGAGCAACTGAAACAGACACGTCCAGAAGAGATGGCTGAGATTGGGGAGAAGATGGCTAGTGCATCGCCCGAAGAGATAGCAGCCATGCATGCACGTGTTGATGCCCAAGTCAGTTACAAATTGAATGCATCTCAGATGCTCAAGAATCAGGGAAACGCACTTCACAGCCAGGGAAAGTTCAACGATGCGTTGCAGAAATACGTACTTGCAAAGACAAACTTGAATGGCCTTCCATCCTCTAAAGGAAGATCACTACTGATGGCATGCTCACTCAACTTAATGTCATGTTACTTGAAAACAAGGCAGTATGACGAATGTATAAAAGAAGGTTCTGAGGTACTGGCATTTGATGCACAGAATGTGAAAGCTCTCTATCGGAGGGGTCAAGCATATAGCGAATTGGGTCAATTGGAAGATGCTGTCTCTGACCTGAGCATGGCACATGAAGTTTCCCCTGATGATGAAACTATTGCAGATGTTCTAAGGGATGCTAAGGAAAAATTGGGTACAGAGGGCAGTGTGTCTGCACCAATAAGACTGGTAATTGAAGAAATAACTGAAGAAGTTGAGACTGTCTCTTCTGCCAACCATAATAGCTCATCTACAGAGTATTCTATGGCACAACCACAGGAAAACAGAGACATTCCAAGGACTCAAATTGCAGCTGACTCTGATGTTCTGTCAAACAATTCAGAGTGTTTGCAGGCTTTAAAAAATGACCCAGCAACTCTCAGAGACTCATCTCCAACAGCAGCATCATTCGATGCTAACAGACAAGGTTCGTCCAAGTATTGCCGTGAAAACTCCTCTGTGAATGTGGCTCATGATGAAGGTGAAAGTAGTTCTCATGGAATATTGCCAAATGTGAGAAGTACTCCTCAGTCGAGCTTCCCTGCCTCTACTGTTGATTTCCAAGAACAAATGAGAAACCAAATGAAAGATCCTGCGATGCGGAAGATGTTGTCATCAATGATGAAGAATATGAGTCCAGACATGTTGGCAAACATGAGTGAGCAATTTGGTTTGAATCTTTCTCAGGAAGATGCGGAAAAAGCTCATCAAGCAATGTCTTCTTTGTCACCAGATTCCTTGGACAACATGATGCAATGGATGGATAGGATTCAAAGAGGAGTGGAAGCTGCAAGGAAGACAAAGAATTGGCTGCTGGGGAAATCCAGTTTGATTTTGGCAATAGTAATGCTCATTCTAGCAGTAATCCTTCATTGCTTGGGATACATTGGTGGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000723 GO:0000726 GO:0000781 GO:0000784 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006303 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0008150 GO:0008152 GO:0009266 GO:0009408 GO:0009628 GO:0009987 GO:0015074 GO:0016043 GO:0031974 GO:0031981 GO:0032200 GO:0033554 GO:0034641 GO:0042162 GO:0042592 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0050896 GO:0051276 GO:0051716 GO:0060249 GO:0065007 GO:0065008 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:0098687 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03450 map03450

Pfam Domains

Protein Families

Ku Ku_C Ku_N Ku_PK_bind

Protein Analysis

476

Amino Acids

52.63

Weight (kDa)

5.1

Isoelectric Point (pI)

61.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPR_1	PF00515	182 - 215	2.9e-06	Tetratricopeptide repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0012943)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48050 AT1G48050 AT1G48050
fragaria_vesca	FvH4_7g11900 FvH4_7g11900
malus_domestica	MD07G1121000.v1.1
prunus_persica	Prupe.2G145600_v2.0.a1
pyrus_communis	pycom07g11020
rosa_chinensis	RchiOBHm_Chr1g0350581
rosa_laevigata	RLG00000028472
rosa_multiflora	Rmu_sc0009041.1_g000003
rosa_roxburghii	Rroxscaffold_4G00304720
rosa_rugosa	Rorug01G0212300
rosa_samantha	Rh1AG226800 Rh1BG195500 Rh1CG211600 Rh1DG223500
rosa_wichuraiana	Rw1G019600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	1135, 1229
AclWI	GGATC	3 cut(s)	20, 33, 1118
AcsI	RAATTY	1 cut(s)	151
AcuI	CTGAAG	2 cut(s)	183, 762
AcvI	CACGTG	1 cut(s)	278
AfaI	GTAC	4 cut(s)	387, 522, 691, 1057
AfiI	CCNNNNNNNGG	1 cut(s)	619
AflIII	ACRYGT	3 cut(s)	200, 277, 1176
AgeI	ACCGGT	1 cut(s)	73
AjiI	CACGTC	1 cut(s)	203
AjnI	CCWGG	2 cut(s)	86, 351
AluBI	AGCT	7 cut(s)	110, 551, 780, 848, 1071, 1238, 1322
AluI	AGCT	7 cut(s)	110, 551, 780, 848, 1071, 1238, 1322
Alw26I	GTCTC	5 cut(s)	610, 746, 763, 816, 912
AlwI	GGATC	3 cut(s)	20, 33, 1118
AoxI	GGCC	2 cut(s)	158, 409
ApeKI	GCWGC	6 cut(s)	179, 263, 845, 935, 1322, 1345
ApoI	RAATTY	1 cut(s)	151
AsiGI	ACCGGT	1 cut(s)	73
AsuHPI	GGTGA	3 cut(s)	63, 1028, 1254
BaeI	ACNNNNGTAYC	1 cut(s)	1408
BamHI	GGATCC	1 cut(s)	25
BbrPI	CACGTG	1 cut(s)	278
BbsI	GAAGAC	2 cut(s)	1245, 1337
BbvI	GCAGC	6 cut(s)	166, 275, 857, 947, 1309, 1332
BccI	CCATC	7 cut(s)	16, 124, 208, 229, 424, 436, 1288
BceAI	ACGGC	1 cut(s)	963
BcgI	CGANNNNNNTGC	2 cut(s)	44, 78
BciT130I	CCWGG	2 cut(s)	88, 353
BciVI	GTATCC	1 cut(s)	1409
BcoDI	GTCTC	5 cut(s)	610, 746, 763, 816, 912
BfaI	CTAG	2 cut(s)	240, 1391
BfmI	CTRYAG	2 cut(s)	180, 786
BfuI	GTATCC	1 cut(s)	1409
BisI	GCNGC	6 cut(s)	180, 264, 846, 936, 1323, 1346
BlsI	GCNGC	6 cut(s)	181, 265, 847, 937, 1324, 1347
BmcAI	AGTACT	1 cut(s)	1057
Bme1390I	CCNGG	2 cut(s)	88, 353
BmgBI	CACGTC	1 cut(s)	203
BmiI	GGNNCC	1 cut(s)	27
BmrFI	CCNGG	2 cut(s)	88, 353
BpiI	GAAGAC	2 cut(s)	1245, 1337
BplI	GAGNNNNNCTC	4 cut(s)	743, 775, 1042, 1074
Bpu10I	CCTNAGC	3 cut(s)	48, 614, 675
BpuEI	CTTGAG	1 cut(s)	308
BsaAI	YACGTR	2 cut(s)	278, 385
BsaJI	CCNNGG	3 cut(s)	352, 830, 1272
BsaWI	WCCGGW	1 cut(s)	73
Bsc4I	CCNNNNNNNGG	1 cut(s)	619
Bse118I	RCCGGY	1 cut(s)	73
Bse1I	ACTGG	4 cut(s)	180, 528, 726, 1359
Bse3DI	GCAATG	3 cut(s)	1254, 1295, 1405
BseBI	CCWGG	2 cut(s)	88, 353
BseDI	CCNNGG	3 cut(s)	352, 830, 1272
BseGI	GGATG	5 cut(s)	18, 72, 416, 676, 1299
BseLI	CCNNNNNNNGG	1 cut(s)	619
BseMI	GCAATG	3 cut(s)	1254, 1295, 1405
BseMII	CTCAG	8 cut(s)	62, 210, 329, 507, 605, 928, 1076, 1232
BseNI	ACTGG	4 cut(s)	180, 528, 726, 1359
BseRI	GAGGAG	3 cut(s)	979, 1050, 1326
BseXI	GCAGC	6 cut(s)	166, 275, 857, 947, 1309, 1332
BseYI	CCCAGC	2 cut(s)	904, 1348
BsgI	GTGCAG	1 cut(s)	693
BshFI	GGCC	2 cut(s)	160, 411
BshTI	ACCGGT	1 cut(s)	73
BsiSI	CCGG	1 cut(s)	74
BslI	CCNNNNNNNGG	1 cut(s)	619
BsmAI	GTCTC	5 cut(s)	610, 746, 763, 816, 912
BsmI	GAATGC	1 cut(s)	313
BsnI	GGCC	2 cut(s)	160, 411
Bsp143I	GATC	3 cut(s)	25, 431, 1123
BspACI	CCGC	2 cut(s)	1135, 1229
BspANI	GGCC	2 cut(s)	160, 411
BspCNI	CTCAG	8 cut(s)	61, 211, 328, 508, 606, 927, 1075, 1231
BspHI	TCATGA	1 cut(s)	1006
BspLI	GGNNCC	1 cut(s)	27
BspMAI	CTGCAG	1 cut(s)	184
BspPI	GGATC	3 cut(s)	20, 33, 1118
BsrDI	GCAATG	3 cut(s)	1254, 1295, 1405
BsrFI	RCCGGY	1 cut(s)	73
BsrI	ACTGG	4 cut(s)	180, 528, 726, 1359
BssAI	RCCGGY	1 cut(s)	73
BssECI	CCNNGG	3 cut(s)	352, 830, 1272
BssMI	GATC	3 cut(s)	25, 431, 1123
BssT1I	CCWWGG	2 cut(s)	830, 1272
Bst2UI	CCWGG	2 cut(s)	88, 353
Bst4CI	ACNGT	2 cut(s)	757, 1087
Bst6I	CTCTTC	3 cut(s)	204, 249, 766
BstAPI	GCANNNNNTGC	1 cut(s)	533
BstBAI	YACGTR	2 cut(s)	278, 385
BstC8I	GCNNGC	3 cut(s)	273, 448, 888
BstF5I	GGATG	5 cut(s)	18, 72, 416, 676, 1299
BstKTI	GATC	3 cut(s)	28, 434, 1126
BstMAI	GTCTC	5 cut(s)	610, 746, 763, 816, 912
BstMBI	GATC	3 cut(s)	25, 431, 1123
BstMWI	GCNNNNNNNGC	4 cut(s)	272, 533, 1235, 1244
BstNI	CCWGG	2 cut(s)	88, 353
BstNSI	RCATGY	3 cut(s)	275, 450, 1180
BstSCI	CCNGG	2 cut(s)	86, 351
BstSFI	CTRYAG	2 cut(s)	180, 786
BstSNI	TACGTA	1 cut(s)	385
BstV1I	GCAGC	6 cut(s)	166, 275, 857, 947, 1309, 1332
BstV2I	GAAGAC	2 cut(s)	1245, 1337
BstX2I	RGATCY	2 cut(s)	25, 1123
BstYI	RGATCY	2 cut(s)	25, 1123
BsuI	GTATCC	1 cut(s)	1409
BsuRI	GGCC	2 cut(s)	160, 411
BtgZI	GCGATG	2 cut(s)	231, 1145
BtrI	CACGTC	1 cut(s)	203
BtsCI	GGATG	5 cut(s)	18, 72, 416, 676, 1299
BtsI	GCAGTG	1 cut(s)	706
BtsIMutI	CAGTG	1 cut(s)	706
Cac8I	GCNNGC	3 cut(s)	273, 448, 888
CciI	TCATGA	1 cut(s)	1006
Cfr10I	RCCGGY	1 cut(s)	73
Csp6I	GTAC	4 cut(s)	386, 521, 690, 1056
CspAI	ACCGGT	1 cut(s)	73
CviQI	GTAC	4 cut(s)	386, 521, 690, 1056
DpnI	GATC	3 cut(s)	27, 433, 1125
DpnII	GATC	3 cut(s)	25, 431, 1123
DraI	TTTAAA	1 cut(s)	894
Eam1104I	CTCTTC	3 cut(s)	204, 249, 766
EarI	CTCTTC	3 cut(s)	204, 249, 766
Eco105I	TACGTA	1 cut(s)	385
Eco130I	CCWWGG	2 cut(s)	830, 1272
Eco147I	AGGCCT	1 cut(s)	160
Eco57I	CTGAAG	2 cut(s)	183, 762
Eco72I	CACGTG	1 cut(s)	278
EcoRII	CCWGG	2 cut(s)	86, 351
EcoT14I	CCWWGG	2 cut(s)	830, 1272
EcoT22I	ATGCAT	2 cut(s)	273, 313
ErhI	CCWWGG	2 cut(s)	830, 1272
FalI	AAGNNNNNCTT	2 cut(s)	386, 418
Fnu4HI	GCNGC	6 cut(s)	180, 264, 846, 936, 1323, 1346
FokI	GGATG	5 cut(s)	25, 79, 403, 683, 1306
Fsp4HI	GCNGC	6 cut(s)	180, 264, 846, 936, 1323, 1346
FspBI	CTAG	2 cut(s)	240, 1391
GluI	GCNGC	6 cut(s)	180, 264, 846, 936, 1323, 1346
GsaI	CCCAGC	2 cut(s)	908, 1352
HaeIII	GGCC	2 cut(s)	160, 411
HapII	CCGG	1 cut(s)	74
HpaII	CCGG	1 cut(s)	74
HphI	GGTGA	3 cut(s)	63, 1028, 1254
Hpy188I	TCNGA	9 cut(s)	66, 139, 318, 517, 561, 610, 856, 877, 917
Hpy188III	TCNNGA	8 cut(s)	29, 50, 116, 206, 325, 1007, 1172, 1220
HpyAV	CCTTC	4 cut(s)	422, 503, 1007, 1412
HpyCH4III	ACNGT	2 cut(s)	757, 1087
HpyCH4IV	ACGT	3 cut(s)	202, 277, 384
HpyF10VI	GCNNNNNNNGC	4 cut(s)	272, 533, 1235, 1244
HpySE526I	ACGT	3 cut(s)	202, 277, 384
Kzo9I	GATC	3 cut(s)	25, 431, 1123
LmnI	GCTCC	1 cut(s)	52
Lsp1109I	GCAGC	6 cut(s)	166, 275, 857, 947, 1309, 1332
MaeI	CTAG	2 cut(s)	240, 1391
MaeII	ACGT	3 cut(s)	202, 277, 384
MaeIII	GTNAC	4 cut(s)	69, 296, 470, 1260
MalI	GATC	3 cut(s)	27, 433, 1125
MboI	GATC	3 cut(s)	25, 431, 1123
MfeI	CAATTG	1 cut(s)	590
MflI	RGATCY	2 cut(s)	25, 1123
MlyI	GAGTC	5 cut(s)	70, 829, 845, 914, 1177
MmeI	TCCRAC	2 cut(s)	44, 953
MnlI	CCTC	9 cut(s)	150, 430, 511, 555, 688, 1000, 1071, 1090, 1304
Mph1103I	ATGCAT	2 cut(s)	273, 313
MseI	TTAA	2 cut(s)	461, 893
MslI	CAYNNNNRTG	1 cut(s)	276
MspA1I	CMGCKG	1 cut(s)	848
MspI	CCGG	1 cut(s)	74
MspR9I	CCNGG	2 cut(s)	88, 353
MunI	CAATTG	1 cut(s)	590
Mva1269I	GAATGC	1 cut(s)	313
MvaI	CCWGG	2 cut(s)	88, 353
MwoI	GCNNNNNNNGC	4 cut(s)	272, 533, 1235, 1244
NdeII	GATC	3 cut(s)	25, 431, 1123
NlaIV	GGNNCC	1 cut(s)	27
NmuCI	GTSAC	2 cut(s)	69, 1260
NsiI	ATGCAT	2 cut(s)	273, 313
NspI	RCATGY	3 cut(s)	275, 450, 1180
PaeI	GCATGC	2 cut(s)	275, 450
PagI	TCATGA	1 cut(s)	1006
PceI	AGGCCT	1 cut(s)	160
PciI	ACATGT	1 cut(s)	1176
PctI	GAATGC	1 cut(s)	313
PfeI	GAWTC	5 cut(s)	91, 328, 1210, 1268, 1303
PinAI	ACCGGT	1 cut(s)	73
PkrI	GCNGC	6 cut(s)	181, 265, 847, 937, 1324, 1347
PleI	GAGTC	5 cut(s)	69, 829, 845, 914, 1176
PmaCI	CACGTG	1 cut(s)	278
PmlI	CACGTG	1 cut(s)	278
PpsI	GAGTC	5 cut(s)	69, 829, 845, 914, 1176
Ppu21I	YACGTR	2 cut(s)	278, 385
PscI	ACATGT	1 cut(s)	1176
Psp6I	CCWGG	2 cut(s)	86, 351
PspCI	CACGTG	1 cut(s)	278
PspFI	CCCAGC	2 cut(s)	904, 1348
PspGI	CCWGG	2 cut(s)	86, 351
PspN4I	GGNNCC	1 cut(s)	27
PstI	CTGCAG	1 cut(s)	184
PsuI	RGATCY	2 cut(s)	25, 1123
PvuII	CAGCTG	1 cut(s)	848
RsaI	GTAC	4 cut(s)	387, 522, 691, 1057
RsaNI	GTAC	4 cut(s)	386, 521, 690, 1056
RseI	CAYNNNNRTG	1 cut(s)	276
SaqAI	TTAA	2 cut(s)	461, 893
SatI	GCNGC	6 cut(s)	180, 264, 846, 936, 1323, 1346
Sau3AI	GATC	3 cut(s)	25, 431, 1123
ScaI	AGTACT	1 cut(s)	1057
SchI	GAGTC	5 cut(s)	70, 829, 845, 914, 1177
ScrFI	CCNGG	2 cut(s)	88, 353
SfcI	CTRYAG	2 cut(s)	180, 786
SmiMI	CAYNNNNRTG	1 cut(s)	276
SmlI	CTYRAG	1 cut(s)	323
SmoI	CTYRAG	1 cut(s)	323
SnaBI	TACGTA	1 cut(s)	385
SphI	GCATGC	2 cut(s)	275, 450
SseBI	AGGCCT	1 cut(s)	160
SsiI	CCGC	2 cut(s)	1135, 1229
SspI	AATATT	1 cut(s)	1038
SspMI	CTAG	2 cut(s)	240, 1391
StuI	AGGCCT	1 cut(s)	160
StyD4I	CCNGG	2 cut(s)	86, 351
StyI	CCWWGG	2 cut(s)	830, 1272
TaaI	ACNGT	2 cut(s)	757, 1087
TaiI	ACGT	3 cut(s)	205, 280, 387
TaqI	TCGA	2 cut(s)	945, 1067
TatI	WGTACW	1 cut(s)	1055
TfiI	GAWTC	5 cut(s)	91, 328, 1210, 1268, 1303
Tru1I	TTAA	2 cut(s)	461, 893
Tru9I	TTAA	2 cut(s)	461, 893
TscAI	CASTG	1 cut(s)	706
TseFI	GTSAC	2 cut(s)	69, 1260
TseI	GCWGC	6 cut(s)	179, 263, 845, 935, 1322, 1345
Tsp45I	GTSAC	2 cut(s)	69, 1260
TspRI	CASTG	1 cut(s)	706
XapI	RAATTY	1 cut(s)	151
XceI	RCATGY	3 cut(s)	275, 450, 1180
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1366
XspI	CTAG	2 cut(s)	240, 1391
ZrmI	AGTACT	1 cut(s)	1057
Zsp2I	ATGCAT	2 cut(s)	273, 313

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.