Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0012943

Physical Location & Seq

Genomic Coordinates Forward (+)

25376376 .. 25383045

Gene Structure 6670 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00304720.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2061 bp

ATGTCTCGAGGCAAGGATGGTACGGTTTTGTTGATTGATGTTGGCCCGTCGATGCATAATGCTCTTCCGGAGATAGAGAAACTTTGCTCTATGCTAGTGGAGAAGAAGCTCATTTACAGCAAAAGTGATGAAGTAGGAGTTGTTTTGTTCGGCACAGAAGGCACTGAAAATGAGCTAACAAGGGAAGTCGGTGGATATGATCATATAACGGTTTTACAAAATATCAAAGTTGTTGATGAACATCTTATTCAGGCTGTGGAACAACTCCCACGAGGAACTCATAATGTTCTTGATGCTGTAATTGTTGGGATGGATATGCTGATAAAGAAATATGGAGAAACAAACAAAGGAAAGAAACGTCTATGTCTATTTACGAATGCACACTTCCCTACTAAAGCTCCACAAGAAGGAACTAAAGAAGATCAAGTTATCACCATTGCCAGACATATGAATACACAAGGCATGAGATTGGAAAGTATAGTCATAAGAGGAGGGCTTACTGGGGAAGCAAAGAAAAGTATAATGGATGAGAATGATCATCTATTGGATATATTCTCAAAGAGAACATGTGCAAAGTTAGTACATGTTGAGACTCCAACCTCATTGCGAGGCGCTCTTAAAACTCGAAAAGTTTCTCCTGTTACAATATTCAGGGGTGATCTTGAGCTGAGCCCCAAAATGAAGATTAAGGTATGGGTTTACAAGAAAACATCAGAAGACAAGTTTCCTACTCTGAAGAAATATTCTGATAAGGCTGCTCCAACAGATAAATTTGCGACACATGAAGTCAAGGTCGATTTTGAGTATAAGAGTGCTGAAGATCCAAGTAAAGTTGTACCTCCGGAACAGAGGATTAAAGGTTATCGTTATGGACCTCAAGTAATTCCCATATCATCTGCCGAATGGGATGCTGTCAAGTTCAAACCAGAAAAAAGTGTGAAACTTCTGGGATTTTCTGATGCTCAAAATATAATGCGACACTATTACATGAAAGATGTCAACGTTTTCATTCCTGAACCGGGTAATACAAGGGCCATTCTTGCTGTTTCTGCCTTGGCACGAGCAATGAAAGATAAGAATAAGGTGGCAATTGTGCGCTGTGTTTGGAGACAAGGACAAGCAAGTGTTATTGTGGGGGCCTTGACACCTAATGTGTCTGACAACGATAATATTCCTGATTCATTTTACTTCAACGTACTCCCTTTTTCTGAAGATGTTCGAGAATTTCAATTCCAATCTTTCAATAATTTCCCAGCAGCATGGCAACCAAGTGAACAGCAGCAAGAGGCTGCTGATGATTTTGTGAGGATGTTTGATCTTGCTCCATCTGGGAAACAGGAGCTTCTGCCACCTGACCTAACACCAAATCCTGTTCTTGAGCGGTTTTTTCGTCATCTTGAGTTAAAGTCAAGGGACCCAGATGCAGCTGTACCTCCAATTGATGAAACCCTCAGGAAGATTGGTGAACCAGATAAGGAGCTGATTGCTGAAAACAAGTCTGTTATTGATGCATTCCGTAGTCGTTTTGAAATCAAAGAGAATCCAAAGCTGAAGAAATCAAGTAGGCGACTGTTGAAAGAAAAACCATCTGTGTCCGATGAAAGAGAGGATCGTATGGACATTTCTGATCAAACCTACTCCAATGAGCATACATCTGGAATTAAGGTTACAAAAATTGGGGATTCTGCTCCTGTCCAGGATTTTGAAGCTATGATGTCCCGTAGAGATAGCCCAGAATGGGTTGGTAAAGCCATCAAGGATATGAAGAACAAAATACACGACTTAGTAGAGGACTCTCACGAAGGGGATAACTATCCTAAAGCACTGGAATGTTTAGTTGCCCTCCGCAAGGGTTGTATCCTAGAGCAAGAACCAAATCAGTTCAATGATTTTCTGCGGTCTCTATGCAAATTCTGCCAGGAGAAGTACCTAAGCAGTTTCTGTGAATTTCTTGCAACCAAAGAACTCACCTTGATTCCCAAGACAGAAGCTATAGACAGTGAAGTTACAGATGCTGAAGCTAGAAGTTTTCTGATCAAATCAGAGCCAAAGTTGGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000723 GO:0000726 GO:0000781 GO:0000784 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006303 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0008150 GO:0008152 GO:0009266 GO:0009408 GO:0009628 GO:0009987 GO:0015074 GO:0016043 GO:0031974 GO:0031981 GO:0032200 GO:0033554 GO:0034641 GO:0042162 GO:0042592 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0050896 GO:0051276 GO:0051716 GO:0060249 GO:0065007 GO:0065008 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:0098687 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03450 map03450

Pfam Domains

Protein Families

Ku Ku_C Ku_N Ku_PK_bind

Protein Analysis

686

Amino Acids

77.66

Weight (kDa)

6.34

Isoelectric Point (pI)

39.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ku_N	PF03731	8 - 140	5.2e-13	Ku70/Ku80 N-terminal alpha/beta domain
Ku	PF02735	225 - 429	8.4e-44	Ku70/Ku80 beta-barrel domain
Ku_C	PF03730	450 - 528	3.3e-07	Ku70/Ku80 C-terminal arm
Ku_PK_bind	PF08785	564 - 678	7.2e-38	Ku C terminal domain like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0012943)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48050 AT1G48050 AT1G48050
fragaria_vesca	FvH4_7g11900 FvH4_7g11900
malus_domestica	MD07G1121000.v1.1
prunus_persica	Prupe.2G145600_v2.0.a1
pyrus_communis	pycom07g11020
rosa_chinensis	RchiOBHm_Chr1g0350581
rosa_laevigata	RLG00000028472
rosa_multiflora	Rmu_sc0009041.1_g000003
rosa_roxburghii	Rroxscaffold_4G00304720
rosa_rugosa	Rorug01G0212300
rosa_samantha	Rh1AG226800 Rh1BG195500 Rh1CG211600 Rh1DG223500
rosa_wichuraiana	Rw1G019600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	1381
AccIII	TCCGGA	2 cut(s)	67, 841
AciI	CCGC	3 cut(s)	1381, 1846, 1897
AclI	AACGTT	1 cut(s)	1002
AclWI	GGATC	2 cut(s)	815, 1617
AcsI	RAATTY	4 cut(s)	770, 1223, 1910, 1946
AcuI	CTGAAG	5 cut(s)	755, 837, 1230, 1571, 2037
AfaI	GTAC	6 cut(s)	22, 582, 837, 1197, 1431, 1928
AfiI	CCNNNNNNNGG	4 cut(s)	407, 1019, 1738, 1849
AflIII	ACRYGT	2 cut(s)	566, 583
AgsI	TTSAA	8 cut(s)	922, 1192, 1229, 1243, 1529, 1576, 1706, 1885
AjnI	CCWGG	2 cut(s)	1695, 1917
Alw26I	GTCTC	4 cut(s)	9, 584, 1102, 1905
AlwI	GGATC	2 cut(s)	815, 1617
AlwNI	CAGNNNCTG	2 cut(s)	1941, 2015
Ama87I	CYCGRG	1 cut(s)	6
Aor13HI	TCCGGA	2 cut(s)	67, 841
AoxI	GGCC	3 cut(s)	43, 1032, 1137
ApeKI	GCWGC	5 cut(s)	755, 1256, 1279, 1289, 1424
ApoI	RAATTY	4 cut(s)	770, 1223, 1910, 1946
Asp700I	GAANNNNTTC	2 cut(s)	631, 1215
AspLEI	GCGC	2 cut(s)	614, 1098
AspS9I	GGNCC	5 cut(s)	44, 872, 1032, 1137, 1414
AsuC2I	CCSGG	1 cut(s)	1020
AsuHPI	GGTGA	4 cut(s)	424, 668, 1475, 1960
AvaI	CYCGRG	1 cut(s)	6
AvaII	GGWCC	2 cut(s)	872, 1414
AxyI	CCTNAGG	1 cut(s)	1451
BanII	GRGCYC	1 cut(s)	674
BarI	GAAGNNNNNNTAC	2 cut(s)	98, 130
BauI	CACGAG	2 cut(s)	270, 1059
BbsI	GAAGAC	1 cut(s)	723
BbvI	GCAGC	5 cut(s)	742, 1268, 1276, 1291, 1436
BccI	CCATC	5 cut(s)	11, 304, 1333, 1594, 1760
BcgI	CGANNNNNNTGC	2 cut(s)	890, 924
BciT130I	CCWGG	2 cut(s)	1697, 1919
BciVI	GTATCC	1 cut(s)	1868
BclI	TGATCA	4 cut(s)	199, 535, 1627, 2034
BcnI	CCSGG	1 cut(s)	1020
BcoDI	GTCTC	4 cut(s)	9, 584, 1102, 1905
BfaI	CTAG	3 cut(s)	95, 1862, 2022
BfmI	CTRYAG	1 cut(s)	1992
BfoI	RGCGCY	1 cut(s)	615
BfuI	GTATCC	1 cut(s)	1868
BisI	GCNGC	5 cut(s)	756, 1257, 1280, 1290, 1425
BlpI	GCTNAGC	1 cut(s)	668
BlsI	GCNGC	5 cut(s)	757, 1258, 1281, 1291, 1426
Bme1390I	CCNGG	3 cut(s)	1020, 1697, 1919
Bme18I	GGWCC	2 cut(s)	872, 1414
BmeT110I	CYCGRG	1 cut(s)	6
BmgT120I	GGNCC	5 cut(s)	44, 872, 1032, 1137, 1414
BmiI	GGNNCC	3 cut(s)	1138, 1415, 1416
BmrFI	CCNGG	3 cut(s)	1020, 1697, 1919
BmrI	ACTGGG	1 cut(s)	510
BmsI	GCATC	7 cut(s)	42, 283, 898, 949, 1411, 1498, 2002
BmuI	ACTGGG	1 cut(s)	510
BpiI	GAAGAC	1 cut(s)	723
Bpu10I	CCTNAGC	1 cut(s)	1931
Bpu1102I	GCTNAGC	1 cut(s)	668
BpuEI	CTTGAG	4 cut(s)	683, 861, 1397, 1418
BpuMI	CCSGG	1 cut(s)	1020
BsaBI	GATNNNNATC	2 cut(s)	240, 1812
BsaI	GGTCTC	1 cut(s)	1905
BsaJI	CCNNGG	1 cut(s)	1053
BsaWI	WCCGGW	2 cut(s)	67, 841
BsaXI	ACNNNNNCTCC	2 cut(s)	382, 412
Bsc4I	CCNNNNNNNGG	4 cut(s)	407, 1019, 1738, 1849
Bse1I	ACTGG	2 cut(s)	505, 1830
Bse21I	CCTNAGG	1 cut(s)	1451
Bse3DI	GCAATG	3 cut(s)	435, 602, 1071
Bse8I	GATNNNNATC	2 cut(s)	240, 1812
BseAI	TCCGGA	2 cut(s)	67, 841
BseBI	CCWGG	2 cut(s)	1697, 1919
BseDI	CCNNGG	1 cut(s)	1053
BseGI	GGATG	5 cut(s)	22, 315, 532, 913, 1314
BseJI	GATNNNNATC	2 cut(s)	240, 1812
BseLI	CCNNNNNNNGG	4 cut(s)	407, 1019, 1738, 1849
BseMI	GCAATG	3 cut(s)	435, 602, 1071
BseMII	CTCAG	2 cut(s)	659, 1465
BseNI	ACTGG	2 cut(s)	505, 1830
BseRI	GAGGAG	1 cut(s)	504
BseXI	GCAGC	5 cut(s)	742, 1268, 1276, 1291, 1436
BseYI	CCCAGC	1 cut(s)	1252
BshFI	GGCC	3 cut(s)	45, 1034, 1139
BsiHKCI	CYCGRG	1 cut(s)	6
BsiSI	CCGG	3 cut(s)	68, 842, 1019
BslFI	GGGAC	2 cut(s)	1427, 1702
BslI	CCNNNNNNNGG	4 cut(s)	407, 1019, 1738, 1849
BsmAI	GTCTC	4 cut(s)	9, 584, 1102, 1905
BsmFI	GGGAC	2 cut(s)	1427, 1702
BsmI	GAATGC	2 cut(s)	382, 1511
BsnI	GGCC	3 cut(s)	45, 1034, 1139
Bso31I	GGTCTC	1 cut(s)	1905
BsoBI	CYCGRG	1 cut(s)	6
Bsp1286I	GDGCHC	1 cut(s)	674
Bsp13I	TCCGGA	2 cut(s)	67, 841
Bsp143I	GATC	9 cut(s)	199, 421, 535, 658, 820, 1315, 1609, 1627, 2034
Bsp1720I	GCTNAGC	1 cut(s)	668
BspACI	CCGC	3 cut(s)	1381, 1846, 1897
BspANI	GGCC	3 cut(s)	45, 1034, 1139
BspCNI	CTCAG	2 cut(s)	660, 1464
BspEI	TCCGGA	2 cut(s)	67, 841
BspLI	GGNNCC	3 cut(s)	1138, 1415, 1416
BspPI	GGATC	2 cut(s)	815, 1617
BspQI	GCTCTTC	1 cut(s)	69
BspTNI	GGTCTC	1 cut(s)	1905
BsrBI	CCGCTC	1 cut(s)	1381
BsrDI	GCAATG	3 cut(s)	435, 602, 1071
BsrI	ACTGG	2 cut(s)	505, 1830
BssECI	CCNNGG	1 cut(s)	1053
BssMI	GATC	9 cut(s)	199, 421, 535, 658, 820, 1315, 1609, 1627, 2034
BssSI	CACGAG	2 cut(s)	270, 1059
BssT1I	CCWWGG	1 cut(s)	1053
Bst2BI	CACGAG	2 cut(s)	270, 1059
Bst2UI	CCWGG	2 cut(s)	1697, 1919
Bst4CI	ACNGT	4 cut(s)	25, 211, 1572, 2000
Bst6I	CTCTTC	1 cut(s)	69
BstAPI	GCANNNNNTGC	1 cut(s)	1914
BstDEI	CTNAG	4 cut(s)	668, 1451, 1783, 1931
BstENI	CCTNNNNNAGG	1 cut(s)	1847
BstF5I	GGATG	5 cut(s)	22, 315, 532, 913, 1314
BstH2I	RGCGCY	1 cut(s)	615
BstHHI	GCGC	2 cut(s)	614, 1098
BstKTI	GATC	9 cut(s)	202, 424, 538, 661, 823, 1318, 1612, 1630, 2037
BstMAI	GTCTC	4 cut(s)	9, 584, 1102, 1905
BstMBI	GATC	9 cut(s)	199, 421, 535, 658, 820, 1315, 1609, 1627, 2034
BstMWI	GCNNNNNNNGC	4 cut(s)	159, 1040, 1049, 1914
BstNI	CCWGG	2 cut(s)	1697, 1919
BstNSI	RCATGY	2 cut(s)	570, 587
BstSCI	CCNGG	3 cut(s)	1018, 1695, 1917
BstSFI	CTRYAG	1 cut(s)	1992
BstV1I	GCAGC	5 cut(s)	742, 1268, 1276, 1291, 1436
BstV2I	GAAGAC	1 cut(s)	723
BstX2I	RGATCY	1 cut(s)	820
BstXI	CCANNNNNNTGG	1 cut(s)	1260
BstYI	RGATCY	1 cut(s)	820
Bsu36I	CCTNAGG	1 cut(s)	1451
BsuI	GTATCC	1 cut(s)	1868
BsuRI	GGCC	3 cut(s)	45, 1034, 1139
BtsCI	GGATG	5 cut(s)	22, 315, 532, 913, 1314
BtsIMutI	CAGTG	3 cut(s)	162, 1823, 2005
CaiI	CAGNNNCTG	2 cut(s)	1941, 2015
CfoI	GCGC	2 cut(s)	614, 1098
Cfr13I	GGNCC	5 cut(s)	44, 872, 1032, 1137, 1414
Csp6I	GTAC	6 cut(s)	21, 581, 836, 1196, 1430, 1927
CviAII	CATG	6 cut(s)	463, 567, 584, 782, 988, 1260
CviQI	GTAC	6 cut(s)	21, 581, 836, 1196, 1430, 1927
DdeI	CTNAG	4 cut(s)	668, 1451, 1783, 1931
DpnI	GATC	9 cut(s)	201, 423, 537, 660, 822, 1317, 1611, 1629, 2036
DpnII	GATC	9 cut(s)	199, 421, 535, 658, 820, 1315, 1609, 1627, 2034
Eam1104I	CTCTTC	1 cut(s)	69
EarI	CTCTTC	1 cut(s)	69
Eco130I	CCWWGG	1 cut(s)	1053
Eco24I	GRGCYC	1 cut(s)	674
Eco31I	GGTCTC	1 cut(s)	1905
Eco47I	GGWCC	2 cut(s)	872, 1414
Eco57I	CTGAAG	5 cut(s)	755, 837, 1230, 1571, 2037
Eco81I	CCTNAGG	1 cut(s)	1451
Eco88I	CYCGRG	1 cut(s)	6
EcoNI	CCTNNNNNAGG	1 cut(s)	1847
EcoO109I	RGGNCCY	2 cut(s)	1137, 1414
EcoRII	CCWGG	2 cut(s)	1695, 1917
EcoT14I	CCWWGG	1 cut(s)	1053
EcoT22I	ATGCAT	2 cut(s)	57, 1513
EcoT38I	GRGCYC	1 cut(s)	674
ErhI	CCWWGG	1 cut(s)	1053
FaeI	CATG	6 cut(s)	466, 570, 587, 785, 991, 1263
FaqI	GGGAC	2 cut(s)	1427, 1702
FatI	CATG	6 cut(s)	462, 566, 583, 781, 987, 1259
FauNDI	CATATG	1 cut(s)	447
FbaI	TGATCA	4 cut(s)	199, 535, 1627, 2034
Fnu4HI	GCNGC	5 cut(s)	756, 1257, 1280, 1290, 1425
FokI	GGATG	5 cut(s)	29, 322, 539, 920, 1321
FriOI	GRGCYC	1 cut(s)	674
Fsp4HI	GCNGC	5 cut(s)	756, 1257, 1280, 1290, 1425
FspBI	CTAG	3 cut(s)	95, 1862, 2022
GlaI	GCGC	2 cut(s)	613, 1097
GluI	GCNGC	5 cut(s)	756, 1257, 1280, 1290, 1425
GsaI	CCCAGC	1 cut(s)	1256
HaeII	RGCGCY	1 cut(s)	615
HaeIII	GGCC	3 cut(s)	45, 1034, 1139
HapII	CCGG	3 cut(s)	68, 842, 1019
HhaI	GCGC	2 cut(s)	614, 1098
Hin1II	CATG	6 cut(s)	466, 570, 587, 785, 991, 1263
Hin6I	GCGC	2 cut(s)	612, 1096
HinP1I	GCGC	2 cut(s)	612, 1096
HincII	GTYRAC	1 cut(s)	1000
HindII	GTYRAC	1 cut(s)	1000
HinfI	GANTC	6 cut(s)	592, 1178, 1540, 1682, 1793, 1975
HpaII	CCGG	3 cut(s)	68, 842, 1019
HphI	GGTGA	4 cut(s)	424, 668, 1475, 1960
Hpy166II	GTNNAC	4 cut(s)	700, 1000, 1274, 1466
Hpy8I	GTNNAC	4 cut(s)	700, 1000, 1274, 1466
Hpy99I	CGWCG	1 cut(s)	52
HpyAV	CCTTC	3 cut(s)	152, 401, 1796
HpyCH4III	ACNGT	4 cut(s)	25, 211, 1572, 2000
HpyCH4IV	ACGT	3 cut(s)	358, 1002, 1194
HpyCH4V	TGCA	7 cut(s)	55, 380, 572, 1424, 1511, 1908, 1955
HpyF10VI	GCNNNNNNNGC	4 cut(s)	159, 1040, 1049, 1914
HpyF3I	CTNAG	4 cut(s)	668, 1451, 1783, 1931
HpySE526I	ACGT	3 cut(s)	358, 1002, 1194
Hsp92II	CATG	6 cut(s)	466, 570, 587, 785, 991, 1263
HspAI	GCGC	2 cut(s)	612, 1096
KflI	GGGWCCC	1 cut(s)	1414
Kpn2I	TCCGGA	2 cut(s)	67, 841
Ksp22I	TGATCA	4 cut(s)	199, 535, 1627, 2034
Kzo9I	GATC	9 cut(s)	199, 421, 535, 658, 820, 1315, 1609, 1627, 2034
LguI	GCTCTTC	1 cut(s)	69
LmnI	GCTCC	6 cut(s)	403, 763, 1327, 1339, 1477, 1693
Lsp1109I	GCAGC	5 cut(s)	742, 1268, 1276, 1291, 1436
LweI	GCATC	7 cut(s)	42, 283, 898, 949, 1411, 1498, 2002
MaeI	CTAG	3 cut(s)	95, 1862, 2022
MaeII	ACGT	3 cut(s)	358, 1002, 1194
MaeIII	GTNAC	3 cut(s)	640, 1666, 2005
MalI	GATC	9 cut(s)	201, 423, 537, 660, 822, 1317, 1611, 1629, 2036
MbiI	CCGCTC	1 cut(s)	1381
MboI	GATC	9 cut(s)	199, 421, 535, 658, 820, 1315, 1609, 1627, 2034
MfeI	CAATTG	2 cut(s)	1089, 1437
MflI	RGATCY	1 cut(s)	820
MhlI	GDGCHC	1 cut(s)	674
MlyI	GAGTC	2 cut(s)	586, 1787
MmeI	TCCRAC	3 cut(s)	620, 785, 2034
Mph1103I	ATGCAT	2 cut(s)	57, 1513
MroI	TCCGGA	2 cut(s)	67, 841
MroXI	GAANNNNTTC	2 cut(s)	631, 1215
MseI	TTAA	5 cut(s)	618, 687, 855, 1403, 1662
MslI	CAYNNNNRTG	1 cut(s)	1828
MspA1I	CMGCKG	1 cut(s)	1427
MspI	CCGG	3 cut(s)	68, 842, 1019
MspR9I	CCNGG	3 cut(s)	1020, 1697, 1919
MunI	CAATTG	2 cut(s)	1089, 1437
Mva1269I	GAATGC	2 cut(s)	382, 1511
MvaI	CCWGG	2 cut(s)	1697, 1919
MwoI	GCNNNNNNNGC	4 cut(s)	159, 1040, 1049, 1914
NciI	CCSGG	1 cut(s)	1020
NdeI	CATATG	1 cut(s)	447
NdeII	GATC	9 cut(s)	199, 421, 535, 658, 820, 1315, 1609, 1627, 2034
NlaIII	CATG	6 cut(s)	466, 570, 587, 785, 991, 1263
NlaIV	GGNNCC	3 cut(s)	1138, 1415, 1416
NsiI	ATGCAT	2 cut(s)	57, 1513
NspI	RCATGY	2 cut(s)	570, 587
PaeR7I	CTCGAG	1 cut(s)	6
PciI	ACATGT	2 cut(s)	566, 583
PciSI	GCTCTTC	1 cut(s)	69
PctI	GAATGC	2 cut(s)	382, 1511
PdmI	GAANNNNTTC	2 cut(s)	631, 1215
PfeI	GAWTC	4 cut(s)	1178, 1540, 1682, 1975
PfoI	TCCNGGA	1 cut(s)	1695
PkrI	GCNGC	5 cut(s)	757, 1258, 1281, 1291, 1426
PleI	GAGTC	2 cut(s)	586, 1787
PpsI	GAGTC	2 cut(s)	586, 1787
PpuMI	RGGWCCY	1 cut(s)	1414
PscI	ACATGT	2 cut(s)	566, 583
Psp1406I	AACGTT	1 cut(s)	1002
Psp5II	RGGWCCY	1 cut(s)	1414
Psp6I	CCWGG	2 cut(s)	1695, 1917
PspFI	CCCAGC	1 cut(s)	1252
PspGI	CCWGG	2 cut(s)	1695, 1917
PspN4I	GGNNCC	3 cut(s)	1138, 1415, 1416
PspPI	GGNCC	5 cut(s)	44, 872, 1032, 1137, 1414
PspPPI	RGGWCCY	1 cut(s)	1414
PstNI	CAGNNNCTG	2 cut(s)	1941, 2015
PsuI	RGATCY	1 cut(s)	820
PvuII	CAGCTG	1 cut(s)	1427
RsaI	GTAC	6 cut(s)	22, 582, 837, 1197, 1431, 1928
RsaNI	GTAC	6 cut(s)	21, 581, 836, 1196, 1430, 1927
RseI	CAYNNNNRTG	1 cut(s)	1828
SapI	GCTCTTC	1 cut(s)	69
SaqAI	TTAA	5 cut(s)	618, 687, 855, 1403, 1662
SatI	GCNGC	5 cut(s)	756, 1257, 1280, 1290, 1425
Sau3AI	GATC	9 cut(s)	199, 421, 535, 658, 820, 1315, 1609, 1627, 2034
Sau96I	GGNCC	5 cut(s)	44, 872, 1032, 1137, 1414
SchI	GAGTC	2 cut(s)	586, 1787
ScrFI	CCNGG	3 cut(s)	1020, 1697, 1919
SduI	GDGCHC	1 cut(s)	674
SfaNI	GCATC	7 cut(s)	42, 283, 898, 949, 1411, 1498, 2002
SfcI	CTRYAG	1 cut(s)	1992
Sfr274I	CTCGAG	1 cut(s)	6
SinI	GGWCC	2 cut(s)	872, 1414
SlaI	CTCGAG	1 cut(s)	6
SmiMI	CAYNNNNRTG	1 cut(s)	1828
SmlI	CTYRAG	5 cut(s)	6, 662, 876, 1376, 1397
SmoI	CTYRAG	5 cut(s)	6, 662, 876, 1376, 1397
SsiI	CCGC	3 cut(s)	1381, 1846, 1897
SspI	AATATT	3 cut(s)	648, 743, 1171
SspMI	CTAG	3 cut(s)	95, 1862, 2022
StyD4I	CCNGG	3 cut(s)	1018, 1695, 1917
StyI	CCWWGG	1 cut(s)	1053
TaaI	ACNGT	4 cut(s)	25, 211, 1572, 2000
TaiI	ACGT	3 cut(s)	361, 1005, 1197
TaqI	TCGA	5 cut(s)	7, 50, 625, 795, 1219
TatI	WGTACW	1 cut(s)	580
TfiI	GAWTC	4 cut(s)	1178, 1540, 1682, 1975
Tru1I	TTAA	5 cut(s)	618, 687, 855, 1403, 1662
Tru9I	TTAA	5 cut(s)	618, 687, 855, 1403, 1662
TscAI	CASTG	3 cut(s)	169, 1830, 2005
TseI	GCWGC	5 cut(s)	755, 1256, 1279, 1289, 1424
TspGWI	ACGGA	1 cut(s)	1505
TspRI	CASTG	3 cut(s)	169, 1830, 2005
VpaK11BI	GGWCC	2 cut(s)	872, 1414
XagI	CCTNNNNNAGG	1 cut(s)	1847
XapI	RAATTY	4 cut(s)	770, 1223, 1910, 1946
XceI	RCATGY	2 cut(s)	570, 587
XhoI	CTCGAG	1 cut(s)	6
XmnI	GAANNNNTTC	2 cut(s)	631, 1215
XspI	CTAG	3 cut(s)	95, 1862, 2022
Zsp2I	ATGCAT	2 cut(s)	57, 1513

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.