Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0009041.1

Orthogroup ID

OG0012943

Physical Location & Seq

Genomic Coordinates Forward (+)

10636 .. 16513

Gene Structure 5878 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0009041.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2358 bp

atgcaaggaactcgttgccatcctaggccagacacggcactcaaagtgcaccagccgagacgacgcccaaacgaaccttcccacctccgcttccttcacccctctttggccatcaccagcggacacctagtcctttctggcccttccgactataacgtcccaaggacgcgctgtcggacaaggcatgaagcgtcttggaagagatcaaaccctagcccaaagcgggaagtgacactaccaaagagaaaaccccaacttctccaacaagctttactccaaatccctctaccaatgtctcgaggcaaggatggtacggttttgttgattgatgttggcccgtcgatgcataaagctcttccggagatagagaagctttgctctatgctagtggagaagaagctcatttacagcaaaagtgatgaagtaggagttgttttgttcggcacagaaggcactgaaaatgagctaacaagggaagtcggtggatatgatcatataacggttttacaaaatatcaaagttgttgatgaacatcttattcgggctgtggaacaactcccacgaggaactcataacggtgattttcttgatgctgtaattgttggggtggatatgctgataaagaaatatggagaaacaaacaaaggaaagaaacgtctttgtctatttacgaatgcacacttccctactaaagctccagaagaaggaacgaaagaagatcaagttatcaccattgccagacatatgaatacacaaggcatgagattggaaagtatagtcataagaggagggcttactggggaagcaaagaaaagtataatggatgagaatgatcatctattggatatattctcaaagagaacatgtgcaaagttagtacatgttgagactccaacctcattgcgaggcgctcttaaaactcgaaaagtttctcctgttacaatattcaggggtgatcttgagctaagccccaaaatgaagattaaggtatgggtttacaagaaaacatcggaagacaagtttcccactctgaagaaatattctgataaggctgctccaacagataaatttgcgacacatgaagtcaaggtggattttgagtataagagtgctgaagatccgagtaaagttgtacctccggaacagaggattaaaggttatcgttatggacctcaagtaattcccatatcatctgccgaatgggatgctgtcaagttcaaaccagaaaaaagtgtaaaacttctgggattttctgatgctcaaaatataatgcgacactattacatgaaagatgtcaacgttttcattcctgaaccgggtaatacaagggccattcttgctgtttctgccttggcacgagcaatgaaagagaagaataaggtggcaattgtgcgctgtgtttggagacaaggacaagcaagtgttattgtgggggccttgacacctaatgtgtctgacaacgataatattcctgattcattttacttcaacgtactccctttttctgaagatgttcgagaatttcaattcccatctttcaataatttcccagcagcatggcaaccaagtgaacagcagcaagaggctgctgatgattttgtgaggatgtttgatcttgctccatctgggaaacgggaggttctgccgcctgacctaacaccaaatcctgttcttgagcggttttttcgtcatcttgagttaaagtcaagggacccagatgcagctgtacctccaattgatgaaaccctcaggaagattggtgaaccagataaggagctgattgctgaaaacaagtctgttattgatgtattccgtagtcattttgaactcaaagagaatccaaagctgaagaaatcaagtaggcgactgttgaaagaaaaaccatctgtttctgatgaaagagaggatcctatggacatttctgatcaaacctactccaacgaacatacatctggaattaaggttacaaaaattggggattctgctcctgtccaggattttgaagctatgatgtcccgtagagatagcccagaatgggttggtaaagccatcaaggatatgaagaacaaaatacacgacttagtagaagactctcacgaaggggataactatcctaaagcactggaatgtttagttgccctccgcaagggttgtatcctagagcaagaaccaaatcagttcaatgattttctgcggtctctatgcaaattctgccaggagaagtacctaagcagtttctgtgaatttcttgcaaacaaggaactcaccttgattcccaagacagaagctatagacagtgaagttacagatgctgaagctagaagttttctggtcaaatcagagccaaagttggaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000723 GO:0000726 GO:0000781 GO:0000784 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006303 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0008150 GO:0008152 GO:0009266 GO:0009408 GO:0009628 GO:0009987 GO:0015074 GO:0016043 GO:0031974 GO:0031981 GO:0032200 GO:0033554 GO:0034641 GO:0042162 GO:0042592 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0050896 GO:0051276 GO:0051716 GO:0060249 GO:0065007 GO:0065008 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:0098687 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03450 map03450

Pfam Domains

Protein Families

Ku Ku_C Ku_N Ku_PK_bind

Protein Analysis

785

Amino Acids

88.99

Weight (kDa)

8.57

Isoelectric Point (pI)

42.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012943)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48050 AT1G48050 AT1G48050
fragaria_vesca	FvH4_7g11900 FvH4_7g11900
malus_domestica	MD07G1121000.v1.1
prunus_persica	Prupe.2G145600_v2.0.a1
pyrus_communis	pycom07g11020
rosa_chinensis	RchiOBHm_Chr1g0350581
rosa_laevigata	RLG00000028472
rosa_multiflora	Rmu_sc0009041.1_g000003
rosa_roxburghii	Rroxscaffold_4G00304720
rosa_rugosa	Rorug01G0212300
rosa_samantha	Rh1AG226800 Rh1BG195500 Rh1CG211600 Rh1DG223500
rosa_wichuraiana	Rw1G019600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	155
AccBSI	CCGCTC	1 cut(s)	1678
AccII	CGCG	1 cut(s)	169
AccIII	TCCGGA	2 cut(s)	358, 1138
AciI	CCGC	7 cut(s)	88, 120, 223, 1646, 1678, 2143, 2194
AclI	AACGTT	1 cut(s)	1299
AclWI	GGATC	3 cut(s)	1112, 1901, 1914
AcoI	YGGCCR	1 cut(s)	108
AcsI	RAATTY	4 cut(s)	1067, 1520, 2207, 2243
AcuI	CTGAAG	5 cut(s)	1052, 1134, 1527, 1868, 2334
AcyI	GRCGYC	1 cut(s)	64
AfaI	GTAC	6 cut(s)	313, 879, 1134, 1494, 1728, 2225
AfiI	CCNNNNNNNGG	6 cut(s)	106, 223, 704, 1316, 2035, 2146
AflIII	ACRYGT	2 cut(s)	863, 880
AgsI	TTSAA	8 cut(s)	1219, 1489, 1526, 1540, 1826, 1873, 2003, 2182
AhdI	GACNNNNNGTC	2 cut(s)	128, 171
AjnI	CCWGG	2 cut(s)	1992, 2214
AjuI	GAANNNNNNNTTGG	2 cut(s)	61, 93
Alw21I	GWGCWC	1 cut(s)	51
Alw26I	GTCTC	5 cut(s)	52, 300, 881, 1399, 2202
Alw44I	GTGCAC	1 cut(s)	47
AlwI	GGATC	3 cut(s)	1112, 1901, 1914
AlwNI	CAGNNNCTG	2 cut(s)	2238, 2312
Ama87I	CYCGRG	1 cut(s)	297
Aor13HI	TCCGGA	2 cut(s)	358, 1138
AoxI	GGCC	6 cut(s)	26, 108, 139, 334, 1329, 1434
ApaLI	GTGCAC	1 cut(s)	47
ApeKI	GCWGC	5 cut(s)	1052, 1553, 1576, 1586, 1721
ApoI	RAATTY	4 cut(s)	1067, 1520, 2207, 2243
Asp700I	GAANNNNTTC	2 cut(s)	928, 1512
AspA2I	CCTAGG	1 cut(s)	23
AspLEI	GCGC	3 cut(s)	171, 911, 1395
AspS9I	GGNCC	6 cut(s)	140, 335, 1169, 1329, 1434, 1711
AsuC2I	CCSGG	1 cut(s)	1317
AsuHPI	GGTGA	7 cut(s)	89, 106, 590, 721, 965, 1772, 2257
AvaI	CYCGRG	1 cut(s)	297
AvaII	GGWCC	2 cut(s)	1169, 1711
AvrII	CCTAGG	1 cut(s)	23
AxyI	CCTNAGG	1 cut(s)	1748
BaeGI	GKGCMC	1 cut(s)	51
BalI	TGGCCA	1 cut(s)	110
BamHI	GGATCC	1 cut(s)	1906
BarI	GAAGNNNNNNTAC	4 cut(s)	219, 251, 389, 421
BauI	CACGAG	2 cut(s)	561, 1356
BbsI	GAAGAC	2 cut(s)	1020, 2094
Bbv12I	GWGCWC	1 cut(s)	51
BbvI	GCAGC	5 cut(s)	1039, 1565, 1573, 1588, 1733
BccI	CCATC	7 cut(s)	27, 119, 302, 1540, 1630, 1891, 2057
BceAI	ACGGC	1 cut(s)	51
BcgI	CGANNNNNNTGC	3 cut(s)	27, 1187, 1221
BciT130I	CCWGG	2 cut(s)	1994, 2216
BciVI	GTATCC	1 cut(s)	2165
BclI	TGATCA	3 cut(s)	490, 832, 1924
BcnI	CCSGG	1 cut(s)	1317
BcoDI	GTCTC	5 cut(s)	52, 300, 881, 1399, 2202
BfaI	CTAG	6 cut(s)	24, 128, 213, 386, 2159, 2319
BfmI	CTRYAG	1 cut(s)	2289
BfoI	RGCGCY	1 cut(s)	912
BfuI	GTATCC	1 cut(s)	2165
BisI	GCNGC	6 cut(s)	1053, 1554, 1577, 1587, 1646, 1722
BlnI	CCTAGG	1 cut(s)	23
BlpI	GCTNAGC	1 cut(s)	965
BlsI	GCNGC	6 cut(s)	1054, 1555, 1578, 1588, 1647, 1723
Bme1390I	CCNGG	3 cut(s)	1317, 1994, 2216
Bme18I	GGWCC	2 cut(s)	1169, 1711
BmeRI	GACNNNNNGTC	2 cut(s)	128, 171
BmeT110I	CYCGRG	1 cut(s)	297
BmgT120I	GGNCC	6 cut(s)	140, 335, 1169, 1329, 1434, 1711
BmiI	GGNNCC	4 cut(s)	1435, 1712, 1713, 1908
BmrFI	CCNGG	3 cut(s)	1317, 1994, 2216
BmrI	ACTGGG	1 cut(s)	807
BmsI	GCATC	6 cut(s)	333, 580, 1195, 1246, 1708, 2299
BmuI	ACTGGG	1 cut(s)	807
BpiI	GAAGAC	2 cut(s)	1020, 2094
BpmI	CTGGAG	1 cut(s)	681
Bpu10I	CCTNAGC	1 cut(s)	2228
Bpu1102I	GCTNAGC	1 cut(s)	965
BpuEI	CTTGAG	4 cut(s)	980, 1158, 1694, 1715
BpuMI	CCSGG	1 cut(s)	1317
BsaBI	GATNNNNATC	2 cut(s)	531, 2109
BsaHI	GRCGYC	1 cut(s)	64
BsaI	GGTCTC	1 cut(s)	2202
BsaJI	CCNNGG	3 cut(s)	23, 161, 1350
BsaWI	WCCGGW	2 cut(s)	358, 1138
BsaXI	ACNNNNNCTCC	2 cut(s)	679, 709
Bsc4I	CCNNNNNNNGG	6 cut(s)	106, 223, 704, 1316, 2035, 2146
Bse1I	ACTGG	2 cut(s)	802, 2127
Bse21I	CCTNAGG	1 cut(s)	1748
Bse3DI	GCAATG	3 cut(s)	732, 899, 1368
Bse8I	GATNNNNATC	2 cut(s)	531, 2109
BseAI	TCCGGA	2 cut(s)	358, 1138
BseBI	CCWGG	2 cut(s)	1994, 2216
BseDI	CCNNGG	3 cut(s)	23, 161, 1350
BseGI	GGATG	5 cut(s)	19, 313, 829, 1210, 1611
BseJI	GATNNNNATC	2 cut(s)	531, 2109
BseLI	CCNNNNNNNGG	6 cut(s)	106, 223, 704, 1316, 2035, 2146
BseMI	GCAATG	3 cut(s)	732, 899, 1368
BseMII	CTCAG	1 cut(s)	1762
BseNI	ACTGG	2 cut(s)	802, 2127
BseRI	GAGGAG	1 cut(s)	801
BseSI	GKGCMC	1 cut(s)	51
BseXI	GCAGC	5 cut(s)	1039, 1565, 1573, 1588, 1733
BseYI	CCCAGC	1 cut(s)	1549
Bsh1236I	CGCG	1 cut(s)	169
BshFI	GGCC	6 cut(s)	28, 110, 141, 336, 1331, 1436
BsiHKAI	GWGCWC	1 cut(s)	51
BsiHKCI	CYCGRG	1 cut(s)	297
BsiSI	CCGG	3 cut(s)	359, 1139, 1316
BslFI	GGGAC	3 cut(s)	143, 1724, 1999
BslI	CCNNNNNNNGG	6 cut(s)	106, 223, 704, 1316, 2035, 2146
BsmAI	GTCTC	5 cut(s)	52, 300, 881, 1399, 2202
BsmBI	CGTCTC	1 cut(s)	52
BsmFI	GGGAC	3 cut(s)	143, 1724, 1999
BsmI	GAATGC	1 cut(s)	679
BsnI	GGCC	6 cut(s)	28, 110, 141, 336, 1331, 1436
Bso31I	GGTCTC	1 cut(s)	2202
BsoBI	CYCGRG	1 cut(s)	297
Bsp1286I	GDGCHC	1 cut(s)	51
Bsp13I	TCCGGA	2 cut(s)	358, 1138
Bsp143I	GATC	9 cut(s)	203, 490, 718, 832, 955, 1117, 1612, 1906, 1924
Bsp1720I	GCTNAGC	1 cut(s)	965
BspACI	CCGC	7 cut(s)	88, 120, 223, 1646, 1678, 2143, 2194
BspANI	GGCC	6 cut(s)	28, 110, 141, 336, 1331, 1436
BspCNI	CTCAG	1 cut(s)	1761
BspEI	TCCGGA	2 cut(s)	358, 1138
BspFNI	CGCG	1 cut(s)	169
BspLI	GGNNCC	4 cut(s)	1435, 1712, 1713, 1908
BspPI	GGATC	3 cut(s)	1112, 1901, 1914
BspQI	GCTCTTC	1 cut(s)	360
BspTNI	GGTCTC	1 cut(s)	2202
BsrBI	CCGCTC	1 cut(s)	1678
BsrDI	GCAATG	3 cut(s)	732, 899, 1368
BsrI	ACTGG	2 cut(s)	802, 2127
BssECI	CCNNGG	3 cut(s)	23, 161, 1350
BssMI	GATC	9 cut(s)	203, 490, 718, 832, 955, 1117, 1612, 1906, 1924
BssNI	GRCGYC	1 cut(s)	64
BssSI	CACGAG	2 cut(s)	561, 1356
BssT1I	CCWWGG	3 cut(s)	23, 161, 1350
Bst2BI	CACGAG	2 cut(s)	561, 1356
Bst2UI	CCWGG	2 cut(s)	1994, 2216
Bst4CI	ACNGT	5 cut(s)	316, 502, 578, 1869, 2297
Bst6I	CTCTTC	2 cut(s)	194, 360
BstACI	GRCGYC	1 cut(s)	64
BstAPI	GCANNNNNTGC	1 cut(s)	2211
BstDEI	CTNAG	4 cut(s)	965, 1748, 2080, 2228
BstENI	CCTNNNNNAGG	1 cut(s)	2144
BstF5I	GGATG	5 cut(s)	19, 313, 829, 1210, 1611
BstFNI	CGCG	1 cut(s)	169
BstH2I	RGCGCY	1 cut(s)	912
BstHHI	GCGC	3 cut(s)	171, 911, 1395
BstKTI	GATC	9 cut(s)	206, 493, 721, 835, 958, 1120, 1615, 1909, 1927
BstMAI	GTCTC	5 cut(s)	52, 300, 881, 1399, 2202
BstMBI	GATC	9 cut(s)	203, 490, 718, 832, 955, 1117, 1612, 1906, 1924
BstMWI	GCNNNNNNNGC	4 cut(s)	450, 1337, 1346, 2211
BstNI	CCWGG	2 cut(s)	1994, 2216
BstNSI	RCATGY	2 cut(s)	867, 884
BstSCI	CCNGG	3 cut(s)	1315, 1992, 2214
BstSFI	CTRYAG	1 cut(s)	2289
BstSLI	GKGCMC	1 cut(s)	51
BstUI	CGCG	1 cut(s)	169
BstV1I	GCAGC	5 cut(s)	1039, 1565, 1573, 1588, 1733
BstV2I	GAAGAC	2 cut(s)	1020, 2094
BstX2I	RGATCY	2 cut(s)	1117, 1906
BstXI	CCANNNNNNTGG	1 cut(s)	1557
BstYI	RGATCY	2 cut(s)	1117, 1906
Bsu36I	CCTNAGG	1 cut(s)	1748
BsuI	GTATCC	1 cut(s)	2165
BsuRI	GGCC	6 cut(s)	28, 110, 141, 336, 1331, 1436
BtsCI	GGATG	5 cut(s)	19, 313, 829, 1210, 1611
BtsIMutI	CAGTG	3 cut(s)	453, 2120, 2302
CaiI	CAGNNNCTG	2 cut(s)	2238, 2312
CfoI	GCGC	3 cut(s)	171, 911, 1395
Cfr13I	GGNCC	6 cut(s)	140, 335, 1169, 1329, 1434, 1711
CseI	GACGC	3 cut(s)	72, 175, 180
Csp6I	GTAC	6 cut(s)	312, 878, 1133, 1493, 1727, 2224
CviAII	CATG	7 cut(s)	185, 760, 864, 881, 1079, 1285, 1557
CviQI	GTAC	6 cut(s)	312, 878, 1133, 1493, 1727, 2224
DdeI	CTNAG	4 cut(s)	965, 1748, 2080, 2228
DpnI	GATC	9 cut(s)	205, 492, 720, 834, 957, 1119, 1614, 1908, 1926
DpnII	GATC	9 cut(s)	203, 490, 718, 832, 955, 1117, 1612, 1906, 1924
DrdI	GACNNNNNNGTC	1 cut(s)	155
DriI	GACNNNNNGTC	2 cut(s)	128, 171
DseDI	GACNNNNNNGTC	1 cut(s)	155
EaeI	YGGCCR	1 cut(s)	108
Eam1104I	CTCTTC	2 cut(s)	194, 360
Eam1105I	GACNNNNNGTC	2 cut(s)	128, 171
EarI	CTCTTC	2 cut(s)	194, 360
Eco130I	CCWWGG	3 cut(s)	23, 161, 1350
Eco31I	GGTCTC	1 cut(s)	2202
Eco47I	GGWCC	2 cut(s)	1169, 1711
Eco57I	CTGAAG	5 cut(s)	1052, 1134, 1527, 1868, 2334
Eco81I	CCTNAGG	1 cut(s)	1748
Eco88I	CYCGRG	1 cut(s)	297
EcoNI	CCTNNNNNAGG	1 cut(s)	2144
EcoO109I	RGGNCCY	2 cut(s)	1434, 1711
EcoRII	CCWGG	2 cut(s)	1992, 2214
EcoT14I	CCWWGG	3 cut(s)	23, 161, 1350
EcoT22I	ATGCAT	1 cut(s)	348
ErhI	CCWWGG	3 cut(s)	23, 161, 1350
Esp3I	CGTCTC	1 cut(s)	52
FaeI	CATG	7 cut(s)	188, 763, 867, 884, 1082, 1288, 1560
FaqI	GGGAC	3 cut(s)	143, 1724, 1999
FatI	CATG	7 cut(s)	184, 759, 863, 880, 1078, 1284, 1556
FauI	CCCGC	1 cut(s)	216
FauNDI	CATATG	1 cut(s)	744
FbaI	TGATCA	3 cut(s)	490, 832, 1924
Fnu4HI	GCNGC	6 cut(s)	1053, 1554, 1577, 1587, 1646, 1722
FokI	GGATG	5 cut(s)	6, 320, 836, 1217, 1618
Fsp4HI	GCNGC	6 cut(s)	1053, 1554, 1577, 1587, 1646, 1722
FspBI	CTAG	6 cut(s)	24, 128, 213, 386, 2159, 2319
GlaI	GCGC	3 cut(s)	170, 910, 1394
GluI	GCNGC	6 cut(s)	1053, 1554, 1577, 1587, 1646, 1722
GsaI	CCCAGC	1 cut(s)	1553
GsuI	CTGGAG	1 cut(s)	681
HaeII	RGCGCY	1 cut(s)	912
HaeIII	GGCC	6 cut(s)	28, 110, 141, 336, 1331, 1436
HapII	CCGG	3 cut(s)	359, 1139, 1316
HgaI	GACGC	3 cut(s)	72, 175, 180
HhaI	GCGC	3 cut(s)	171, 911, 1395
Hin1I	GRCGYC	1 cut(s)	64
Hin1II	CATG	7 cut(s)	188, 763, 867, 884, 1082, 1288, 1560
Hin6I	GCGC	3 cut(s)	169, 909, 1393
HinP1I	GCGC	3 cut(s)	169, 909, 1393
HincII	GTYRAC	1 cut(s)	1297
HindII	GTYRAC	1 cut(s)	1297
HindIII	AAGCTT	2 cut(s)	267, 371
HinfI	GANTC	6 cut(s)	889, 1475, 1837, 1979, 2090, 2272
HpaII	CCGG	3 cut(s)	359, 1139, 1316
HphI	GGTGA	7 cut(s)	89, 106, 590, 721, 965, 1772, 2257
Hpy166II	GTNNAC	5 cut(s)	49, 997, 1297, 1571, 1763
Hpy8I	GTNNAC	5 cut(s)	49, 997, 1297, 1571, 1763
Hpy99I	CGWCG	2 cut(s)	66, 343
HpyAV	CCTTC	6 cut(s)	87, 104, 153, 443, 698, 2093
HpyCH4III	ACNGT	5 cut(s)	316, 502, 578, 1869, 2297
HpyCH4IV	ACGT	4 cut(s)	156, 655, 1299, 1491
HpyCH4V	TGCA	8 cut(s)	4, 49, 346, 677, 869, 1721, 2205, 2252
HpyF10VI	GCNNNNNNNGC	4 cut(s)	450, 1337, 1346, 2211
HpyF3I	CTNAG	4 cut(s)	965, 1748, 2080, 2228
HpySE526I	ACGT	4 cut(s)	156, 655, 1299, 1491
Hsp92I	GRCGYC	1 cut(s)	64
Hsp92II	CATG	7 cut(s)	188, 763, 867, 884, 1082, 1288, 1560
HspAI	GCGC	3 cut(s)	169, 909, 1393
KflI	GGGWCCC	1 cut(s)	1711
Kpn2I	TCCGGA	2 cut(s)	358, 1138
Ksp22I	TGATCA	3 cut(s)	490, 832, 1924
Kzo9I	GATC	9 cut(s)	203, 490, 718, 832, 955, 1117, 1612, 1906, 1924
LguI	GCTCTTC	1 cut(s)	360
LmnI	GCTCC	5 cut(s)	700, 1060, 1624, 1774, 1990
Lsp1109I	GCAGC	5 cut(s)	1039, 1565, 1573, 1588, 1733
LweI	GCATC	6 cut(s)	333, 580, 1195, 1246, 1708, 2299
MaeI	CTAG	6 cut(s)	24, 128, 213, 386, 2159, 2319
MaeII	ACGT	4 cut(s)	156, 655, 1299, 1491
MaeIII	GTNAC	4 cut(s)	229, 937, 1963, 2302
MalI	GATC	9 cut(s)	205, 492, 720, 834, 957, 1119, 1614, 1908, 1926
MbiI	CCGCTC	1 cut(s)	1678
MboI	GATC	9 cut(s)	203, 490, 718, 832, 955, 1117, 1612, 1906, 1924
MfeI	CAATTG	2 cut(s)	1386, 1734
MflI	RGATCY	2 cut(s)	1117, 1906
MhlI	GDGCHC	1 cut(s)	51
MlsI	TGGCCA	1 cut(s)	110
MluNI	TGGCCA	1 cut(s)	110
MlyI	GAGTC	2 cut(s)	883, 2084
MmeI	TCCRAC	7 cut(s)	155, 171, 286, 917, 1082, 1962, 2331
Mox20I	TGGCCA	1 cut(s)	110
Mph1103I	ATGCAT	1 cut(s)	348
MroI	TCCGGA	2 cut(s)	358, 1138
MroXI	GAANNNNTTC	2 cut(s)	928, 1512
MscI	TGGCCA	1 cut(s)	110
MseI	TTAA	5 cut(s)	915, 984, 1152, 1700, 1959
MslI	CAYNNNNRTG	2 cut(s)	576, 2125
Msp20I	TGGCCA	1 cut(s)	110
MspA1I	CMGCKG	2 cut(s)	120, 1724
MspI	CCGG	3 cut(s)	359, 1139, 1316
MspR9I	CCNGG	3 cut(s)	1317, 1994, 2216
MunI	CAATTG	2 cut(s)	1386, 1734
Mva1269I	GAATGC	1 cut(s)	679
MvaI	CCWGG	2 cut(s)	1994, 2216
MvnI	CGCG	1 cut(s)	169
MwoI	GCNNNNNNNGC	4 cut(s)	450, 1337, 1346, 2211
NciI	CCSGG	1 cut(s)	1317
NdeI	CATATG	1 cut(s)	744
NdeII	GATC	9 cut(s)	203, 490, 718, 832, 955, 1117, 1612, 1906, 1924
NlaIII	CATG	7 cut(s)	188, 763, 867, 884, 1082, 1288, 1560
NlaIV	GGNNCC	4 cut(s)	1435, 1712, 1713, 1908
NmeAIII	GCCGAG	1 cut(s)	81
NmuCI	GTSAC	1 cut(s)	229
NsiI	ATGCAT	1 cut(s)	348
NspI	RCATGY	2 cut(s)	867, 884
PaeR7I	CTCGAG	1 cut(s)	297
PciI	ACATGT	2 cut(s)	863, 880
PciSI	GCTCTTC	1 cut(s)	360
PctI	GAATGC	1 cut(s)	679
PdmI	GAANNNNTTC	2 cut(s)	928, 1512
PfeI	GAWTC	4 cut(s)	1475, 1837, 1979, 2272
PfoI	TCCNGGA	1 cut(s)	1992
PkrI	GCNGC	6 cut(s)	1054, 1555, 1578, 1588, 1647, 1723
PleI	GAGTC	2 cut(s)	883, 2084
PpsI	GAGTC	2 cut(s)	883, 2084
PpuMI	RGGWCCY	1 cut(s)	1711
PscI	ACATGT	2 cut(s)	863, 880
Psp1406I	AACGTT	1 cut(s)	1299
Psp5II	RGGWCCY	1 cut(s)	1711
Psp6I	CCWGG	2 cut(s)	1992, 2214
PspFI	CCCAGC	1 cut(s)	1549
PspGI	CCWGG	2 cut(s)	1992, 2214
PspN4I	GGNNCC	4 cut(s)	1435, 1712, 1713, 1908
PspPI	GGNCC	6 cut(s)	140, 335, 1169, 1329, 1434, 1711
PspPPI	RGGWCCY	1 cut(s)	1711
PstNI	CAGNNNCTG	2 cut(s)	2238, 2312
PsuI	RGATCY	2 cut(s)	1117, 1906
PvuII	CAGCTG	1 cut(s)	1724
RsaI	GTAC	6 cut(s)	313, 879, 1134, 1494, 1728, 2225
RsaNI	GTAC	6 cut(s)	312, 878, 1133, 1493, 1727, 2224
RseI	CAYNNNNRTG	2 cut(s)	576, 2125
SapI	GCTCTTC	1 cut(s)	360
SaqAI	TTAA	5 cut(s)	915, 984, 1152, 1700, 1959
SatI	GCNGC	6 cut(s)	1053, 1554, 1577, 1587, 1646, 1722
Sau3AI	GATC	9 cut(s)	203, 490, 718, 832, 955, 1117, 1612, 1906, 1924
Sau96I	GGNCC	6 cut(s)	140, 335, 1169, 1329, 1434, 1711
SchI	GAGTC	2 cut(s)	883, 2084
ScrFI	CCNGG	3 cut(s)	1317, 1994, 2216
SduI	GDGCHC	1 cut(s)	51
SfaNI	GCATC	6 cut(s)	333, 580, 1195, 1246, 1708, 2299
SfcI	CTRYAG	1 cut(s)	2289
Sfr274I	CTCGAG	1 cut(s)	297
SinI	GGWCC	2 cut(s)	1169, 1711
SlaI	CTCGAG	1 cut(s)	297
SmiMI	CAYNNNNRTG	2 cut(s)	576, 2125
SmlI	CTYRAG	5 cut(s)	297, 959, 1173, 1673, 1694
SmoI	CTYRAG	5 cut(s)	297, 959, 1173, 1673, 1694
SsiI	CCGC	7 cut(s)	88, 120, 223, 1646, 1678, 2143, 2194
SspI	AATATT	3 cut(s)	945, 1040, 1468
SspMI	CTAG	6 cut(s)	24, 128, 213, 386, 2159, 2319
StyD4I	CCNGG	3 cut(s)	1315, 1992, 2214
StyI	CCWWGG	3 cut(s)	23, 161, 1350
TaaI	ACNGT	5 cut(s)	316, 502, 578, 1869, 2297
TaiI	ACGT	4 cut(s)	159, 658, 1302, 1494
TaqI	TCGA	4 cut(s)	298, 341, 922, 1516
TatI	WGTACW	1 cut(s)	877
TauI	GCSGC	1 cut(s)	1648
TfiI	GAWTC	4 cut(s)	1475, 1837, 1979, 2272
Tru1I	TTAA	5 cut(s)	915, 984, 1152, 1700, 1959
Tru9I	TTAA	5 cut(s)	915, 984, 1152, 1700, 1959
TscAI	CASTG	3 cut(s)	460, 2127, 2302
TseFI	GTSAC	1 cut(s)	229
TseI	GCWGC	5 cut(s)	1052, 1553, 1576, 1586, 1721
Tsp45I	GTSAC	1 cut(s)	229
TspGWI	ACGGA	1 cut(s)	1802
TspRI	CASTG	3 cut(s)	460, 2127, 2302
VneI	GTGCAC	1 cut(s)	47
VpaK11BI	GGWCC	2 cut(s)	1169, 1711
XagI	CCTNNNNNAGG	1 cut(s)	2144
XapI	RAATTY	4 cut(s)	1067, 1520, 2207, 2243
XceI	RCATGY	2 cut(s)	867, 884
XhoI	CTCGAG	1 cut(s)	297
XmaJI	CCTAGG	1 cut(s)	23
XmnI	GAANNNNTTC	2 cut(s)	928, 1512
XspI	CTAG	6 cut(s)	24, 128, 213, 386, 2159, 2319
Zsp2I	ATGCAT	1 cut(s)	348

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.