Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0014195

Physical Location & Seq

Genomic Coordinates Reverse (-)

12600942 .. 12602803

Gene Structure 1862 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g14240.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1020 bp

ATGCCAATGCCAGAATCACATCACTCTTCTTCTGTTAAACTTCCCATGCTAGACATCTCTCAGCCTTTGAACTCATTAGCTTCTGATTTGCCCTCTCTTTCTGAAGCCTTGAAAACATGGGGTTTCTTCCACATCACCAATCATGGGATCTCCAAAGATATTTTCACAAAACTACATTCTCTTTCAAATCACCTTTTCAGCCTCCCTTCTGATACCAAACTCAAGCTTGGTCCTTTCTCTTCTATAAAAACGTATACCCCTCATTTCATAGCCTCCCCCTTCTTTGAAAGCCTTAGAGTTTCTGGACCAAAGTTCTCTGAGTCTGCTCAAACTTCTGCAGATGTTCTCTTTGACCAACACAATTCTGAATTCAGTGAGGTATTACATGAATATGGGAGCAAGATGGCAGAATTGTCTCAAAAAATCATTAAGATTGCTTTGATGAGCTTGCGGGAGGATTTTGAGAAGAAATACTATGAATCTGAATTTCAGAATTGCCATGGTTACTTGAGAATGAACAACTACTCATCTCCTTCAGATGGTTTGGAAGATCATGATGAGGTTGAAGGACTTGGAATGCACACAGACATGAGCTGTGTGACAATTGTGTACCAAGATGAAATTGGAGGACTTCAAGTGAGATCAAAAGAAGGTAAGTGGATGGACATAAGGCCATGTGAGGGAACCTTGGTAGTGAACGTTGGTGACATGTTTCAAGCTTGGAGCAATGAGAAGTTGAGATCATCAGAACATAGAGTGATTCTCAGGCAGCCTGTAAACCGCTTTTCGCTAGCCTTCTTCTGGTGTTTTGAAGATCAGAAGGTGATTTCTGCACCAGATGATGTGGTGGGAGAAGGGAATGTGAGGATTTATGAACCGTTTGTTTGCTTGGATTATTTGAAATTCAGGGAGAGCAATGAGAGAGGGAAATTTGAGAAGGTTGGGTTTACTGTGAGGGGTTTTGCAGGGATCAAAAACCAGCAAGTTATCAAATGTGACAGTGGGAAGCGTGGCTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0006082 GO:0006629 GO:0006720 GO:0006721 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009314 GO:0009416 GO:0009628 GO:0009685 GO:0009686 GO:0009719 GO:0009725 GO:0009739 GO:0009740 GO:0009755 GO:0009987 GO:0010033 GO:0010476 GO:0010817 GO:0016053 GO:0016101 GO:0016102 GO:0016114 GO:0016491 GO:0016705 GO:0016706 GO:0016707 GO:0019752 GO:0023052 GO:0032870 GO:0033993 GO:0042221 GO:0042445 GO:0042446 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0046394 GO:0050789 GO:0050794 GO:0050896 GO:0051213 GO:0051716 GO:0055114 GO:0065007 GO:0065008 GO:0070887 GO:0071229 GO:0071310 GO:0071370 GO:0071396 GO:0071495 GO:0071704 GO:1901576 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

340

Amino Acids

38.52

Weight (kDa)

5.92

Isoelectric Point (pI)

44.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	14 - 87	2.1e-12	non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy	PF03171	172 - 269	2.1e-24	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014195)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G23340 AT4G23340
fragaria_vesca	FvH4_7g14240
malus_domestica	MD01G1060300.v1.1 MD07G1137400.v1.1
prunus_persica	Prupe.2G170200_v2.0.a1
pyrus_communis	pycom01g09040
rosa_chinensis	RchiOBHm_Chr1g0355221
rosa_laevigata	RLG00000028170
rosa_multiflora	Rmu_sc0003115.1_g000042
rosa_roxburghii	Rroxscaffold_4G00300580
rosa_rugosa	Rorug01G0245600
rosa_samantha	Rh1AG258100 Rh1BG227700 Rh1CG241800 Rh1DG255500
rosa_wichuraiana	Rw1G022770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	254
AciI	CCGC	2 cut(s)	451, 781
AclI	AACGTT	1 cut(s)	699
AclWI	GGATC	2 cut(s)	155, 977
AcsI	RAATTY	4 cut(s)	368, 485, 902, 929
AcuI	CTGAAG	2 cut(s)	123, 519
AfaI	GTAC	1 cut(s)	611
AfiI	CCNNNNNNNGG	4 cut(s)	144, 539, 680, 801
AflIII	ACRYGT	1 cut(s)	708
AgsI	TTSAA	9 cut(s)	70, 112, 186, 287, 566, 635, 716, 812, 901
AjuI	GAANNNNNNNTTGG	2 cut(s)	146, 178
AluBI	AGCT	5 cut(s)	80, 226, 447, 594, 719
AluI	AGCT	5 cut(s)	80, 226, 447, 594, 719
Alw26I	GTCTC	1 cut(s)	420
AlwI	GGATC	2 cut(s)	155, 977
AoxI	GGCC	1 cut(s)	671
ApeKI	GCWGC	1 cut(s)	769
ApoI	RAATTY	4 cut(s)	368, 485, 902, 929
AspS9I	GGNCC	2 cut(s)	230, 305
AsuHPI	GGTGA	4 cut(s)	127, 182, 716, 835
AsuNHI	GCTAGC	1 cut(s)	790
AvaII	GGWCC	2 cut(s)	230, 305
BbvI	GCAGC	1 cut(s)	781
BccI	CCATC	3 cut(s)	397, 533, 655
BcoDI	GTCTC	1 cut(s)	420
BfaI	CTAG	2 cut(s)	50, 791
BfmI	CTRYAG	1 cut(s)	336
BisI	GCNGC	1 cut(s)	770
BlsI	GCNGC	1 cut(s)	771
Bme18I	GGWCC	2 cut(s)	230, 305
BmgT120I	GGNCC	2 cut(s)	230, 305
BmiI	GGNNCC	1 cut(s)	685
BmtI	GCTAGC	1 cut(s)	794
BplI	GAGNNNNNCTC	2 cut(s)	747, 779
BpuEI	CTTGAG	2 cut(s)	206, 529
BsaJI	CCNNGG	2 cut(s)	499, 687
Bsc4I	CCNNNNNNNGG	4 cut(s)	144, 539, 680, 801
Bse3DI	GCAATG	2 cut(s)	733, 922
BseDI	CCNNGG	2 cut(s)	499, 687
BseGI	GGATG	1 cut(s)	666
BseLI	CCNNNNNNNGG	4 cut(s)	144, 539, 680, 801
BseMI	GCAATG	2 cut(s)	733, 922
BseMII	CTCAG	3 cut(s)	74, 309, 778
BseXI	GCAGC	1 cut(s)	781
BsgI	GTGCAG	1 cut(s)	816
BshFI	GGCC	1 cut(s)	673
BslI	CCNNNNNNNGG	4 cut(s)	144, 539, 680, 801
BsmAI	GTCTC	1 cut(s)	420
BsmI	GAATGC	1 cut(s)	582
BsnI	GGCC	1 cut(s)	673
Bsp143I	GATC	6 cut(s)	147, 550, 641, 740, 814, 969
Bsp19I	CCATGG	1 cut(s)	499
BspACI	CCGC	2 cut(s)	451, 781
BspANI	GGCC	1 cut(s)	673
BspCNI	CTCAG	3 cut(s)	73, 310, 777
BspHI	TCATGA	1 cut(s)	553
BspLI	GGNNCC	1 cut(s)	685
BspMAI	CTGCAG	1 cut(s)	340
BspOI	GCTAGC	1 cut(s)	794
BspPI	GGATC	2 cut(s)	155, 977
BsrDI	GCAATG	2 cut(s)	733, 922
BssECI	CCNNGG	2 cut(s)	499, 687
BssMI	GATC	6 cut(s)	147, 550, 641, 740, 814, 969
BssNAI	GTATAC	1 cut(s)	255
BssT1I	CCWWGG	2 cut(s)	499, 687
Bst1107I	GTATAC	1 cut(s)	255
Bst4CI	ACNGT	3 cut(s)	879, 952, 1001
Bst6I	CTCTTC	2 cut(s)	31, 244
BstC8I	GCNNGC	2 cut(s)	449, 792
BstDEI	CTNAG	4 cut(s)	60, 293, 318, 764
BstDSI	CCRYGG	1 cut(s)	499
BstF5I	GGATG	1 cut(s)	666
BstKTI	GATC	6 cut(s)	150, 553, 644, 743, 817, 972
BstMAI	GTCTC	1 cut(s)	420
BstMBI	GATC	6 cut(s)	147, 550, 641, 740, 814, 969
BstNSI	RCATGY	1 cut(s)	712
BstSFI	CTRYAG	1 cut(s)	336
BstV1I	GCAGC	1 cut(s)	781
BstX2I	RGATCY	1 cut(s)	147
BstYI	RGATCY	1 cut(s)	147
BstZ17I	GTATAC	1 cut(s)	255
BsuRI	GGCC	1 cut(s)	673
BtgI	CCRYGG	1 cut(s)	499
BtsCI	GGATG	1 cut(s)	666
BtsIMutI	CAGTG	2 cut(s)	379, 1006
Cac8I	GCNNGC	2 cut(s)	449, 792
CciI	TCATGA	1 cut(s)	553
Cfr13I	GGNCC	2 cut(s)	230, 305
Csp6I	GTAC	1 cut(s)	610
CviAII	CATG	9 cut(s)	46, 117, 143, 386, 500, 554, 589, 675, 709
CviQI	GTAC	1 cut(s)	610
DdeI	CTNAG	4 cut(s)	60, 293, 318, 764
DpnI	GATC	6 cut(s)	149, 552, 643, 742, 816, 971
DpnII	GATC	6 cut(s)	147, 550, 641, 740, 814, 969
Eam1104I	CTCTTC	2 cut(s)	31, 244
EarI	CTCTTC	2 cut(s)	31, 244
Eco130I	CCWWGG	2 cut(s)	499, 687
Eco47I	GGWCC	2 cut(s)	230, 305
Eco57I	CTGAAG	2 cut(s)	123, 519
EcoRI	GAATTC	1 cut(s)	368
EcoT14I	CCWWGG	2 cut(s)	499, 687
ErhI	CCWWGG	2 cut(s)	499, 687
FaeI	CATG	9 cut(s)	49, 120, 146, 389, 503, 557, 592, 678, 712
FalI	AAGNNNNNCTT	1 cut(s)	998
FatI	CATG	9 cut(s)	45, 116, 142, 385, 499, 553, 588, 674, 708
FauI	CCCGC	1 cut(s)	444
FblI	GTMKAC	1 cut(s)	254
Fnu4HI	GCNGC	1 cut(s)	770
FokI	GGATG	1 cut(s)	673
Fsp4HI	GCNGC	1 cut(s)	770
FspBI	CTAG	2 cut(s)	50, 791
GluI	GCNGC	1 cut(s)	770
HaeIII	GGCC	1 cut(s)	673
Hin1II	CATG	9 cut(s)	49, 120, 146, 389, 503, 557, 592, 678, 712
HindIII	AAGCTT	2 cut(s)	224, 717
HinfI	GANTC	4 cut(s)	14, 320, 479, 760
HphI	GGTGA	4 cut(s)	127, 182, 716, 835
Hpy166II	GTNNAC	5 cut(s)	255, 610, 697, 778, 948
Hpy188III	TCNNGA	2 cut(s)	303, 554
Hpy8I	GTNNAC	5 cut(s)	255, 610, 697, 778, 948
HpyAV	CCTTC	9 cut(s)	216, 289, 543, 560, 644, 805, 814, 848, 931
HpyCH4III	ACNGT	3 cut(s)	879, 952, 1001
HpyCH4IV	ACGT	2 cut(s)	251, 699
HpyCH4V	TGCA	4 cut(s)	338, 580, 833, 965
HpyF3I	CTNAG	4 cut(s)	60, 293, 318, 764
HpySE526I	ACGT	2 cut(s)	251, 699
Hsp92II	CATG	9 cut(s)	49, 120, 146, 389, 503, 557, 592, 678, 712
Kzo9I	GATC	6 cut(s)	147, 550, 641, 740, 814, 969
LmnI	GCTCC	2 cut(s)	396, 723
LpnPI	CCDG	9 cut(s)	24, 288, 751, 786, 787, 849, 892, 951, 992
Lsp1109I	GCAGC	1 cut(s)	781
MaeI	CTAG	2 cut(s)	50, 791
MaeII	ACGT	2 cut(s)	251, 699
MaeIII	GTNAC	4 cut(s)	503, 598, 704, 995
MalI	GATC	6 cut(s)	149, 552, 643, 742, 816, 971
MboI	GATC	6 cut(s)	147, 550, 641, 740, 814, 969
MboII	GAAGA	8 cut(s)	18, 21, 118, 231, 478, 560, 790, 824
MfeI	CAATTG	1 cut(s)	603
MflI	RGATCY	1 cut(s)	147
MluCI	AATT	9 cut(s)	361, 368, 410, 485, 493, 603, 621, 902, 929
MlyI	GAGTC	1 cut(s)	329
MseI	TTAA	2 cut(s)	36, 429
MslI	CAYNNNNRTG	2 cut(s)	390, 587
MunI	CAATTG	1 cut(s)	603
Mva1269I	GAATGC	1 cut(s)	582
NcoI	CCATGG	1 cut(s)	499
NdeII	GATC	6 cut(s)	147, 550, 641, 740, 814, 969
NheI	GCTAGC	1 cut(s)	790
NlaIII	CATG	9 cut(s)	49, 120, 146, 389, 503, 557, 592, 678, 712
NlaIV	GGNNCC	1 cut(s)	685
NmuCI	GTSAC	3 cut(s)	598, 704, 995
NspI	RCATGY	1 cut(s)	712
PagI	TCATGA	1 cut(s)	553
PciI	ACATGT	1 cut(s)	708
PctI	GAATGC	1 cut(s)	582
PfeI	GAWTC	3 cut(s)	14, 479, 760
PkrI	GCNGC	1 cut(s)	771
PleI	GAGTC	1 cut(s)	328
PpsI	GAGTC	1 cut(s)	328
PscI	ACATGT	1 cut(s)	708
Psp1406I	AACGTT	1 cut(s)	699
PspN4I	GGNNCC	1 cut(s)	685
PspPI	GGNCC	2 cut(s)	230, 305
PstI	CTGCAG	1 cut(s)	340
PsuI	RGATCY	1 cut(s)	147
RsaI	GTAC	1 cut(s)	611
RsaNI	GTAC	1 cut(s)	610
RseI	CAYNNNNRTG	2 cut(s)	390, 587
SaqAI	TTAA	2 cut(s)	36, 429
SatI	GCNGC	1 cut(s)	770
Sau3AI	GATC	6 cut(s)	147, 550, 641, 740, 814, 969
Sau96I	GGNCC	2 cut(s)	230, 305
SchI	GAGTC	1 cut(s)	329
SfcI	CTRYAG	1 cut(s)	336
SinI	GGWCC	2 cut(s)	230, 305
SmiMI	CAYNNNNRTG	2 cut(s)	390, 587
SmlI	CTYRAG	2 cut(s)	221, 508
SmoI	CTYRAG	2 cut(s)	221, 508
Sse9I	AATT	9 cut(s)	361, 368, 410, 485, 493, 603, 621, 902, 929
SsiI	CCGC	2 cut(s)	451, 781
SspMI	CTAG	2 cut(s)	50, 791
StyI	CCWWGG	2 cut(s)	499, 687
TaaI	ACNGT	3 cut(s)	879, 952, 1001
TaiI	ACGT	2 cut(s)	254, 702
TasI	AATT	9 cut(s)	361, 368, 410, 485, 493, 603, 621, 902, 929
TfiI	GAWTC	3 cut(s)	14, 479, 760
Tru1I	TTAA	2 cut(s)	36, 429
Tru9I	TTAA	2 cut(s)	36, 429
TscAI	CASTG	2 cut(s)	379, 1006
TseFI	GTSAC	3 cut(s)	598, 704, 995
TseI	GCWGC	1 cut(s)	769
Tsp45I	GTSAC	3 cut(s)	598, 704, 995
TspDTI	ATGAA	6 cut(s)	256, 402, 492, 530, 633, 888
TspRI	CASTG	2 cut(s)	379, 1006
VpaK11BI	GGWCC	2 cut(s)	230, 305
XapI	RAATTY	4 cut(s)	368, 485, 902, 929
XceI	RCATGY	1 cut(s)	712
XcmI	CCANNNNNNNNNTGG	1 cut(s)	620
XmiI	GTMKAC	1 cut(s)	254
XspI	CTAG	2 cut(s)	50, 791

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.