Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0014195

Physical Location & Seq

Genomic Coordinates Reverse (-)

46906263 .. 46908240

Gene Structure 1978 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG255500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1053 bp

ATGTCAGAATCTCATCATTCTTCTTCTGTTAAACTTCATCATTCTTCTTCTGTTAAACTTCCCATGCTAGACATCTCTCAGCCTATGAACCCATTATCTTCTGATTTGCCTTCTCTTTCTGAAGCCTTGAAAACATGGGGTTTCTTCCACATCACCAATCATGGGATCTCCAAAGATCTTTTCACAAAACTACAATCACTTTCAAGTCACCTCTTCAGCCTCCCTTCTGATACCAAACTCAAACTTGGTCCTTTCTCTTCTATAAAAAGTTATACCCCTCATTTCATAGCCTCCCCCTTCTTTGAAAGCCTCAGAGTTTCTGGCCCAAAGTTCTCTGAGTCTGCTCAAATTTCTGCAGATGTTCTCTTTGACCAACACAACTCTGAATTCAGTGAGGTATTACATGAATATGGGAGCAAGATGGCAGAATTGTCTCAAAAAATCATAAAGATTGCTTTGATGAGCTTGGGGGAGGATTTTGAGTTAAAATACTATGAATCTGAATTTCAGAATTGCCATGGTTACTTGAGAATGAATAACTACTCCTCACCTTCAGAAGGTTTGGAAGATCAAGATGAGGTTGAAGGACTTGGAATGCACACTGACATGAGCTGTGTGACAATTGTGTACCAAGACGAGATTGGTGGACTTCAAGTGAGATCAAAAGAGGGTAAGTGGATGGACATAAGCCCATGTGAAGGAACCTTGGTGGTGAACGTTGGTGACATGTTTCAAGCTTGGAGCAATGAGAAGTTGAGATCATCAGAACATAGAGTGATTCTCAAGCAGCCTGTAAACCGCTTTTCGCTAGCCTTCTTCTGGTGTTTTGAAGATCAGAAGGTGATTTCTGCACCAGATGATGTGGTGGGAGAAGGGAATGTGAGGATTTACGAGCCATTTGTTTGCTCGGATTATTTGAAATTCAGAGAGAGCAATGAGAGAGGGAGGTTTGAGAAGGTTGGGTTTACAGTGAGGGGTTTTGCAGGGATTAAAGACCAGCAAGTTATAAAATGTGACAGTGGAAAAGGAATTGGAAGTGCGGCTTGTAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0006082 GO:0006629 GO:0006720 GO:0006721 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009314 GO:0009416 GO:0009628 GO:0009685 GO:0009686 GO:0009719 GO:0009725 GO:0009739 GO:0009740 GO:0009755 GO:0009987 GO:0010033 GO:0010476 GO:0010817 GO:0016053 GO:0016101 GO:0016102 GO:0016114 GO:0016491 GO:0016705 GO:0016706 GO:0016707 GO:0019752 GO:0023052 GO:0032870 GO:0033993 GO:0042221 GO:0042445 GO:0042446 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0046394 GO:0050789 GO:0050794 GO:0050896 GO:0051213 GO:0051716 GO:0055114 GO:0065007 GO:0065008 GO:0070887 GO:0071229 GO:0071310 GO:0071370 GO:0071396 GO:0071495 GO:0071704 GO:1901576 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

350

Amino Acids

39.31

Weight (kDa)

5.55

Isoelectric Point (pI)

46.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	20 - 93	1.2e-12	non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy	PF03171	178 - 275	4.1e-24	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014195)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G23340 AT4G23340
fragaria_vesca	FvH4_7g14240
malus_domestica	MD01G1060300.v1.1 MD07G1137400.v1.1
prunus_persica	Prupe.2G170200_v2.0.a1
pyrus_communis	pycom01g09040
rosa_chinensis	RchiOBHm_Chr1g0355221
rosa_laevigata	RLG00000028170
rosa_multiflora	Rmu_sc0003115.1_g000042
rosa_roxburghii	Rroxscaffold_4G00300580
rosa_rugosa	Rorug01G0245600
rosa_samantha	Rh1AG258100 Rh1BG227700 Rh1CG241800 Rh1DG255500
rosa_wichuraiana	Rw1G022770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1007
AciI	CCGC	2 cut(s)	799, 1040
AclI	AACGTT	1 cut(s)	717
AclWI	GGATC	1 cut(s)	173
AcsI	RAATTY	4 cut(s)	348, 386, 503, 920
AcuI	CTGAAG	3 cut(s)	141, 199, 537
AfaI	GTAC	1 cut(s)	629
AfiI	CCNNNNNNNGG	4 cut(s)	162, 557, 698, 819
AflIII	ACRYGT	1 cut(s)	726
AgsI	TTSAA	8 cut(s)	130, 204, 305, 584, 653, 734, 830, 919
AjuI	GAANNNNNNNTTGG	2 cut(s)	164, 196
AluBI	AGCT	3 cut(s)	465, 612, 737
AluI	AGCT	3 cut(s)	465, 612, 737
Alw26I	GTCTC	1 cut(s)	438
AlwI	GGATC	1 cut(s)	173
AoxI	GGCC	1 cut(s)	322
ApeKI	GCWGC	1 cut(s)	787
ApoI	RAATTY	4 cut(s)	348, 386, 503, 920
AspS9I	GGNCC	2 cut(s)	248, 323
AsuHPI	GGTGA	6 cut(s)	145, 200, 540, 724, 734, 853
AsuNHI	GCTAGC	1 cut(s)	808
AvaII	GGWCC	1 cut(s)	248
BbvI	GCAGC	1 cut(s)	799
BccI	CCATC	2 cut(s)	415, 673
BcoDI	GTCTC	1 cut(s)	438
BfaI	CTAG	2 cut(s)	68, 809
BfmI	CTRYAG	1 cut(s)	354
BglII	AGATCT	1 cut(s)	175
BisI	GCNGC	2 cut(s)	788, 1041
BlsI	GCNGC	2 cut(s)	789, 1042
Bme18I	GGWCC	1 cut(s)	248
BmgT120I	GGNCC	2 cut(s)	248, 323
BmiI	GGNNCC	1 cut(s)	703
BmtI	GCTAGC	1 cut(s)	812
BplI	GAGNNNNNCTC	2 cut(s)	765, 797
BpuEI	CTTGAG	2 cut(s)	547, 767
BsaJI	CCNNGG	2 cut(s)	517, 705
Bsc4I	CCNNNNNNNGG	4 cut(s)	162, 557, 698, 819
Bse3DI	GCAATG	2 cut(s)	751, 940
BseDI	CCNNGG	2 cut(s)	517, 705
BseGI	GGATG	1 cut(s)	684
BseLI	CCNNNNNNNGG	4 cut(s)	162, 557, 698, 819
BseMI	GCAATG	2 cut(s)	751, 940
BseMII	CTCAG	3 cut(s)	92, 325, 327
BseRI	GAGGAG	1 cut(s)	535
BseXI	GCAGC	1 cut(s)	799
BsgI	GTGCAG	1 cut(s)	834
BshFI	GGCC	1 cut(s)	324
BslI	CCNNNNNNNGG	4 cut(s)	162, 557, 698, 819
BsmAI	GTCTC	1 cut(s)	438
BsmI	GAATGC	1 cut(s)	600
BsnI	GGCC	1 cut(s)	324
Bsp143I	GATC	6 cut(s)	165, 175, 568, 659, 758, 832
Bsp19I	CCATGG	1 cut(s)	517
BspACI	CCGC	2 cut(s)	799, 1040
BspANI	GGCC	1 cut(s)	324
BspCNI	CTCAG	3 cut(s)	91, 324, 328
BspLI	GGNNCC	1 cut(s)	703
BspMAI	CTGCAG	1 cut(s)	358
BspOI	GCTAGC	1 cut(s)	812
BspPI	GGATC	1 cut(s)	173
BsrDI	GCAATG	2 cut(s)	751, 940
BssECI	CCNNGG	2 cut(s)	517, 705
BssMI	GATC	6 cut(s)	165, 175, 568, 659, 758, 832
BssT1I	CCWWGG	2 cut(s)	517, 705
Bst4CI	ACNGT	2 cut(s)	970, 1019
Bst6I	CTCTTC	2 cut(s)	218, 262
BstC8I	GCNNGC	1 cut(s)	810
BstDEI	CTNAG	3 cut(s)	78, 311, 336
BstDSI	CCRYGG	1 cut(s)	517
BstENI	CCTNNNNNAGG	1 cut(s)	555
BstF5I	GGATG	1 cut(s)	684
BstKTI	GATC	6 cut(s)	168, 178, 571, 662, 761, 835
BstMAI	GTCTC	1 cut(s)	438
BstMBI	GATC	6 cut(s)	165, 175, 568, 659, 758, 832
BstNSI	RCATGY	1 cut(s)	730
BstSFI	CTRYAG	1 cut(s)	354
BstV1I	GCAGC	1 cut(s)	799
BstX2I	RGATCY	2 cut(s)	165, 175
BstYI	RGATCY	2 cut(s)	165, 175
BsuRI	GGCC	1 cut(s)	324
BtgI	CCRYGG	1 cut(s)	517
BtsCI	GGATG	1 cut(s)	684
BtsIMutI	CAGTG	4 cut(s)	397, 600, 975, 1024
Cac8I	GCNNGC	1 cut(s)	810
Cfr13I	GGNCC	2 cut(s)	248, 323
Csp6I	GTAC	1 cut(s)	628
CviAII	CATG	8 cut(s)	64, 135, 161, 404, 518, 607, 693, 727
CviQI	GTAC	1 cut(s)	628
DdeI	CTNAG	3 cut(s)	78, 311, 336
DpnI	GATC	6 cut(s)	167, 177, 570, 661, 760, 834
DpnII	GATC	6 cut(s)	165, 175, 568, 659, 758, 832
Eam1104I	CTCTTC	2 cut(s)	218, 262
EarI	CTCTTC	2 cut(s)	218, 262
Eco130I	CCWWGG	2 cut(s)	517, 705
Eco47I	GGWCC	1 cut(s)	248
Eco57I	CTGAAG	3 cut(s)	141, 199, 537
EcoNI	CCTNNNNNAGG	1 cut(s)	555
EcoRI	GAATTC	1 cut(s)	386
EcoT14I	CCWWGG	2 cut(s)	517, 705
ErhI	CCWWGG	2 cut(s)	517, 705
FaeI	CATG	8 cut(s)	67, 138, 164, 407, 521, 610, 696, 730
FalI	AAGNNNNNCTT	1 cut(s)	1027
FatI	CATG	8 cut(s)	63, 134, 160, 403, 517, 606, 692, 726
Fnu4HI	GCNGC	2 cut(s)	788, 1041
FokI	GGATG	1 cut(s)	691
Fsp4HI	GCNGC	2 cut(s)	788, 1041
FspBI	CTAG	2 cut(s)	68, 809
GluI	GCNGC	2 cut(s)	788, 1041
HaeIII	GGCC	1 cut(s)	324
Hin1II	CATG	8 cut(s)	67, 138, 164, 407, 521, 610, 696, 730
HindIII	AAGCTT	1 cut(s)	735
HinfI	GANTC	4 cut(s)	8, 338, 497, 778
HphI	GGTGA	6 cut(s)	145, 200, 540, 724, 734, 853
Hpy166II	GTNNAC	5 cut(s)	628, 647, 715, 796, 966
Hpy188III	TCNNGA	1 cut(s)	572
Hpy8I	GTNNAC	5 cut(s)	628, 647, 715, 796, 966
HpyCH4III	ACNGT	2 cut(s)	970, 1019
HpyCH4IV	ACGT	1 cut(s)	717
HpyCH4V	TGCA	4 cut(s)	356, 598, 851, 983
HpyF3I	CTNAG	3 cut(s)	78, 311, 336
HpySE526I	ACGT	1 cut(s)	717
Hsp92II	CATG	8 cut(s)	67, 138, 164, 407, 521, 610, 696, 730
Kzo9I	GATC	6 cut(s)	165, 175, 568, 659, 758, 832
LmnI	GCTCC	2 cut(s)	414, 741
LpnPI	CCDG	6 cut(s)	306, 804, 805, 867, 969, 1010
Lsp1109I	GCAGC	1 cut(s)	799
MaeI	CTAG	2 cut(s)	68, 809
MaeII	ACGT	1 cut(s)	717
MaeIII	GTNAC	5 cut(s)	206, 521, 616, 722, 1013
MalI	GATC	6 cut(s)	167, 177, 570, 661, 760, 834
MboI	GATC	6 cut(s)	165, 175, 568, 659, 758, 832
MfeI	CAATTG	1 cut(s)	621
MflI	RGATCY	2 cut(s)	165, 175
MluCI	AATT	9 cut(s)	348, 386, 428, 503, 511, 621, 920, 1029, 1048
MlyI	GAGTC	1 cut(s)	347
MseI	TTAA	4 cut(s)	30, 54, 485, 990
MslI	CAYNNNNRTG	2 cut(s)	408, 605
MunI	CAATTG	1 cut(s)	621
Mva1269I	GAATGC	1 cut(s)	600
NcoI	CCATGG	1 cut(s)	517
NdeII	GATC	6 cut(s)	165, 175, 568, 659, 758, 832
NheI	GCTAGC	1 cut(s)	808
NlaIII	CATG	8 cut(s)	67, 138, 164, 407, 521, 610, 696, 730
NlaIV	GGNNCC	1 cut(s)	703
NmuCI	GTSAC	4 cut(s)	206, 616, 722, 1013
NspI	RCATGY	1 cut(s)	730
PciI	ACATGT	1 cut(s)	726
PctI	GAATGC	1 cut(s)	600
PfeI	GAWTC	3 cut(s)	8, 497, 778
PkrI	GCNGC	2 cut(s)	789, 1042
PleI	GAGTC	1 cut(s)	346
PpsI	GAGTC	1 cut(s)	346
PscI	ACATGT	1 cut(s)	726
PsiI	TTATAA	1 cut(s)	1007
Psp1406I	AACGTT	1 cut(s)	717
PspN4I	GGNNCC	1 cut(s)	703
PspPI	GGNCC	2 cut(s)	248, 323
PstI	CTGCAG	1 cut(s)	358
PsuI	RGATCY	2 cut(s)	165, 175
RsaI	GTAC	1 cut(s)	629
RsaNI	GTAC	1 cut(s)	628
RseI	CAYNNNNRTG	2 cut(s)	408, 605
SaqAI	TTAA	4 cut(s)	30, 54, 485, 990
SatI	GCNGC	2 cut(s)	788, 1041
Sau3AI	GATC	6 cut(s)	165, 175, 568, 659, 758, 832
Sau96I	GGNCC	2 cut(s)	248, 323
SchI	GAGTC	1 cut(s)	347
SfcI	CTRYAG	1 cut(s)	354
SinI	GGWCC	1 cut(s)	248
SmiMI	CAYNNNNRTG	2 cut(s)	408, 605
SmlI	CTYRAG	2 cut(s)	526, 782
SmoI	CTYRAG	2 cut(s)	526, 782
Sse9I	AATT	9 cut(s)	348, 386, 428, 503, 511, 621, 920, 1029, 1048
SsiI	CCGC	2 cut(s)	799, 1040
SspMI	CTAG	2 cut(s)	68, 809
StyI	CCWWGG	2 cut(s)	517, 705
TaaI	ACNGT	2 cut(s)	970, 1019
TaiI	ACGT	1 cut(s)	720
TasI	AATT	9 cut(s)	348, 386, 428, 503, 511, 621, 920, 1029, 1048
TauI	GCSGC	1 cut(s)	1043
TfiI	GAWTC	3 cut(s)	8, 497, 778
Tru1I	TTAA	4 cut(s)	30, 54, 485, 990
Tru9I	TTAA	4 cut(s)	30, 54, 485, 990
TscAI	CASTG	4 cut(s)	397, 607, 975, 1024
TseFI	GTSAC	4 cut(s)	206, 616, 722, 1013
TseI	GCWGC	1 cut(s)	787
Tsp45I	GTSAC	4 cut(s)	206, 616, 722, 1013
TspDTI	ATGAA	6 cut(s)	26, 101, 274, 420, 510, 548
TspRI	CASTG	4 cut(s)	397, 607, 975, 1024
VpaK11BI	GGWCC	1 cut(s)	248
XagI	CCTNNNNNAGG	1 cut(s)	555
XapI	RAATTY	4 cut(s)	348, 386, 503, 920
XceI	RCATGY	1 cut(s)	730
XcmI	CCANNNNNNNNNTGG	1 cut(s)	638
XspI	CTAG	2 cut(s)	68, 809

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.