Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0014195

Physical Location & Seq

Genomic Coordinates Reverse (-)

10050546 .. 10052045

Gene Structure 1500 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g09040.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1161 bp

ATGCATAACATGCTAACAGAATTTAAGAAAGTCTATACATATGACCTGGATGCCTACTTACAGCCTGTACTCTTGGCTACTTGTAACTGCAAATTAAATTATTTAATTAGCTTCATTCATGAGAAAGCATATCAAGATAATCTAAGTACTCTACAAACTCTAGATGCAATGTCAGAAATATTTCAAACTTGTGTTAAACTCCCCATGCTAGACATTTCCCAGCCAGTATTGCACCCATCTTCTCTATCCTCTCTAGCTGAAGCCTTCAAAACATGGGGCTTCTTCCACATCACCAATCATGGGATCTCCAAAGATCTTTTCAGAAACCTATATTCCCTGTCAAATGACCTGTTCAGCCTCCCTTCTGATACCAAACTCAAACTTGGTCCTTCCTCTTCTGCCAAAACTTATACCCCTCACTTCATAGCCTCTCCCTACTTTGAAAGTCTTAGAGTTTCTGGCCCCAAGTTCTTTGATTCTGCTCAAAGTTCTGCACAAGTTCTCTTTGACCAACACAACTCTGAATTCAGTGAAATATTACAAGAATATGGGAGCAAGATGGCAGAACTATCGAAGAAGATCGTAAAGATTGCGCTGATGAGCTTGGGGGATGGATTGGAGAAGAAACATTACGAAACCGAATTCAAAAATTGCCATGGTTACTTGAGAGTGAACAACTACTCAACCCCTCCAGAAAGTTTGGAAGATCAACATCAAGAAGTTGAAGGACTTGGAATGCACACTGACATGAGCTGTGTGACAATTGTGTACCAAGAAGAAATCGGAGGGCTTCAAGTGAGATCAAAGGAGGGAAAGTGGATGGACATAACTCCATGTGAGGGGACCTTGGTGGTGAACATAGGAGACATGTTTCAAGCTTGGAGCAATGATAATTTGAGGTCATCAGAGCATAGAGTCATTTTAAAGCAGCCGAAAAATCGGTTTTCTTTGGCCTTTTTTTGGAGTTTTGAGGATGAGAAGGTGATATTTGCACCAGAAGATGTGGTGGGAGAAGGGAATGAGAGGATTTACAAGCCATTTGTTTGCTTGGATTATTTGAAGTTCAGAGAGAGCAATGAGAGAGGGAAGTTCGAAAAAGTTGGGTTTACCGTGAGGGATTTTGCAGGGATCGAACACAAAATTACCAACTGTGAAAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0006082 GO:0006629 GO:0006720 GO:0006721 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009314 GO:0009416 GO:0009628 GO:0009685 GO:0009686 GO:0009719 GO:0009725 GO:0009739 GO:0009740 GO:0009755 GO:0009987 GO:0010033 GO:0010476 GO:0010817 GO:0016053 GO:0016101 GO:0016102 GO:0016114 GO:0016491 GO:0016705 GO:0016706 GO:0016707 GO:0019752 GO:0023052 GO:0032870 GO:0033993 GO:0042221 GO:0042445 GO:0042446 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0046394 GO:0050789 GO:0050794 GO:0050896 GO:0051213 GO:0051716 GO:0055114 GO:0065007 GO:0065008 GO:0070887 GO:0071229 GO:0071310 GO:0071370 GO:0071396 GO:0071495 GO:0071704 GO:1901576 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

387

Amino Acids

44.15

Weight (kDa)

5.58

Isoelectric Point (pI)

48.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	67 - 141	4.9e-15	non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy	PF03171	223 - 321	8.2e-24	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014195)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G23340 AT4G23340
fragaria_vesca	FvH4_7g14240
malus_domestica	MD01G1060300.v1.1 MD07G1137400.v1.1
prunus_persica	Prupe.2G170200_v2.0.a1
pyrus_communis	pycom01g09040
rosa_chinensis	RchiOBHm_Chr1g0355221
rosa_laevigata	RLG00000028170
rosa_multiflora	Rmu_sc0003115.1_g000042
rosa_roxburghii	Rroxscaffold_4G00300580
rosa_rugosa	Rorug01G0245600
rosa_samantha	Rh1AG258100 Rh1BG227700 Rh1CG241800 Rh1DG255500
rosa_wichuraiana	Rw1G022770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	311, 1136
AcsI	RAATTY	3 cut(s)	20, 524, 641
AcuI	CTGAAG	1 cut(s)	279
AfaI	GTAC	3 cut(s)	69, 148, 770
AfiI	CCNNNNNNNGG	3 cut(s)	300, 839, 960
AflIII	ACRYGT	1 cut(s)	867
AgsI	TTSAA	8 cut(s)	185, 268, 443, 646, 725, 794, 875, 1060
AjnI	CCWGG	1 cut(s)	45
AjuI	GAANNNNNNNTTGG	2 cut(s)	302, 334
AluBI	AGCT	5 cut(s)	111, 257, 603, 753, 878
AluI	AGCT	5 cut(s)	111, 257, 603, 753, 878
Alw26I	GTCTC	1 cut(s)	858
AlwI	GGATC	2 cut(s)	311, 1136
AoxI	GGCC	2 cut(s)	460, 951
ApeKI	GCWGC	1 cut(s)	928
ApoI	RAATTY	3 cut(s)	20, 524, 641
Asp700I	GAANNNNTTC	1 cut(s)	180
AspLEI	GCGC	1 cut(s)	595
AspS9I	GGNCC	3 cut(s)	386, 461, 843
AsuHPI	GGTGA	3 cut(s)	283, 865, 994
AsuII	TTCGAA	1 cut(s)	1092
AvaII	GGWCC	2 cut(s)	386, 843
BarI	GAAGNNNNNNTAC	2 cut(s)	614, 646
BbvI	GCAGC	1 cut(s)	940
BccI	CCATC	4 cut(s)	244, 553, 605, 814
BcgI	CGANNNNNNTGC	2 cut(s)	552, 586
BciT130I	CCWGG	1 cut(s)	47
BcoDI	GTCTC	1 cut(s)	858
BfaI	CTAG	3 cut(s)	161, 209, 254
BglII	AGATCT	1 cut(s)	313
BisI	GCNGC	1 cut(s)	929
BlsI	GCNGC	1 cut(s)	930
BmcAI	AGTACT	1 cut(s)	148
Bme1390I	CCNGG	1 cut(s)	47
Bme18I	GGWCC	2 cut(s)	386, 843
BmgT120I	GGNCC	3 cut(s)	386, 461, 843
BmiI	GGNNCC	2 cut(s)	463, 844
BmrFI	CCNGG	1 cut(s)	47
BmsI	GCATC	2 cut(s)	40, 154
BpmI	CTGGAG	1 cut(s)	675
Bpu14I	TTCGAA	1 cut(s)	1092
BpuEI	CTTGAG	1 cut(s)	685
BsaBI	GATNNNNATC	1 cut(s)	711
BsaJI	CCNNGG	2 cut(s)	655, 846
BsaXI	ACNNNNNCTCC	2 cut(s)	800, 830
Bsc4I	CCNNNNNNNGG	3 cut(s)	300, 839, 960
Bse1I	ACTGG	1 cut(s)	224
Bse3DI	GCAATG	3 cut(s)	174, 892, 1081
Bse8I	GATNNNNATC	1 cut(s)	711
BseBI	CCWGG	1 cut(s)	47
BseDI	CCNNGG	2 cut(s)	655, 846
BseGI	GGATG	4 cut(s)	55, 616, 825, 979
BseJI	GATNNNNATC	1 cut(s)	711
BseLI	CCNNNNNNNGG	3 cut(s)	300, 839, 960
BseMI	GCAATG	3 cut(s)	174, 892, 1081
BseNI	ACTGG	1 cut(s)	224
BseXI	GCAGC	1 cut(s)	940
BseYI	CCCAGC	1 cut(s)	219
BsgI	GTGCAG	1 cut(s)	477
BshFI	GGCC	2 cut(s)	462, 953
BslFI	GGGAC	1 cut(s)	856
BslI	CCNNNNNNNGG	3 cut(s)	300, 839, 960
BsmAI	GTCTC	1 cut(s)	858
BsmFI	GGGAC	1 cut(s)	856
BsmI	GAATGC	1 cut(s)	741
BsnI	GGCC	2 cut(s)	462, 953
Bsp119I	TTCGAA	1 cut(s)	1092
Bsp143I	GATC	6 cut(s)	303, 313, 579, 706, 800, 1128
Bsp19I	CCATGG	1 cut(s)	655
BspANI	GGCC	2 cut(s)	462, 953
BspHI	TCATGA	1 cut(s)	118
BspLI	GGNNCC	2 cut(s)	463, 844
BspPI	GGATC	2 cut(s)	311, 1136
BspT104I	TTCGAA	1 cut(s)	1092
BsrDI	GCAATG	3 cut(s)	174, 892, 1081
BsrI	ACTGG	1 cut(s)	224
BssECI	CCNNGG	2 cut(s)	655, 846
BssMI	GATC	6 cut(s)	303, 313, 579, 706, 800, 1128
BssT1I	CCWWGG	2 cut(s)	655, 846
Bst2UI	CCWGG	1 cut(s)	47
Bst4CI	ACNGT	2 cut(s)	1111, 1151
Bst6I	CTCTTC	1 cut(s)	400
BstAPI	GCANNNNNTGC	1 cut(s)	10
BstBI	TTCGAA	1 cut(s)	1092
BstDEI	CTNAG	2 cut(s)	143, 449
BstDSI	CCRYGG	1 cut(s)	655
BstF5I	GGATG	4 cut(s)	55, 616, 825, 979
BstHHI	GCGC	1 cut(s)	595
BstKTI	GATC	6 cut(s)	306, 316, 582, 709, 803, 1131
BstMAI	GTCTC	1 cut(s)	858
BstMBI	GATC	6 cut(s)	303, 313, 579, 706, 800, 1128
BstMWI	GCNNNNNNNGC	2 cut(s)	10, 229
BstNI	CCWGG	1 cut(s)	47
BstNSI	RCATGY	2 cut(s)	13, 871
BstSCI	CCNGG	1 cut(s)	45
BstV1I	GCAGC	1 cut(s)	940
BstX2I	RGATCY	2 cut(s)	303, 313
BstYI	RGATCY	2 cut(s)	303, 313
BsuRI	GGCC	2 cut(s)	462, 953
BtgI	CCRYGG	1 cut(s)	655
BtsCI	GGATG	4 cut(s)	55, 616, 825, 979
BtsIMutI	CAGTG	2 cut(s)	535, 741
CciI	TCATGA	1 cut(s)	118
CfoI	GCGC	1 cut(s)	595
Cfr13I	GGNCC	3 cut(s)	386, 461, 843
Csp6I	GTAC	3 cut(s)	68, 147, 769
CviAII	CATG	9 cut(s)	10, 119, 205, 273, 299, 656, 748, 834, 868
CviQI	GTAC	3 cut(s)	68, 147, 769
DdeI	CTNAG	2 cut(s)	143, 449
DpnI	GATC	6 cut(s)	305, 315, 581, 708, 802, 1130
DpnII	GATC	6 cut(s)	303, 313, 579, 706, 800, 1128
DraI	TTTAAA	1 cut(s)	924
Eam1104I	CTCTTC	1 cut(s)	400
EarI	CTCTTC	1 cut(s)	400
Eco130I	CCWWGG	2 cut(s)	655, 846
Eco47I	GGWCC	2 cut(s)	386, 843
Eco57I	CTGAAG	1 cut(s)	279
EcoO109I	RGGNCCY	1 cut(s)	843
EcoRI	GAATTC	2 cut(s)	524, 641
EcoRII	CCWGG	1 cut(s)	45
EcoT14I	CCWWGG	2 cut(s)	655, 846
EcoT22I	ATGCAT	1 cut(s)	6
ErhI	CCWWGG	2 cut(s)	655, 846
FaeI	CATG	9 cut(s)	13, 122, 208, 276, 302, 659, 751, 837, 871
FaqI	GGGAC	1 cut(s)	856
FatI	CATG	9 cut(s)	9, 118, 204, 272, 298, 655, 747, 833, 867
FauNDI	CATATG	1 cut(s)	40
Fnu4HI	GCNGC	1 cut(s)	929
FokI	GGATG	4 cut(s)	62, 623, 832, 986
Fsp4HI	GCNGC	1 cut(s)	929
FspBI	CTAG	3 cut(s)	161, 209, 254
GlaI	GCGC	1 cut(s)	594
GluI	GCNGC	1 cut(s)	929
GsaI	CCCAGC	1 cut(s)	223
GsuI	CTGGAG	1 cut(s)	675
HaeIII	GGCC	2 cut(s)	462, 953
HhaI	GCGC	1 cut(s)	595
Hin1II	CATG	9 cut(s)	13, 122, 208, 276, 302, 659, 751, 837, 871
Hin6I	GCGC	1 cut(s)	593
HinP1I	GCGC	1 cut(s)	593
HindIII	AAGCTT	1 cut(s)	876
HinfI	GANTC	2 cut(s)	476, 915
HphI	GGTGA	3 cut(s)	283, 865, 994
Hpy166II	GTNNAC	4 cut(s)	673, 769, 856, 1107
Hpy188I	TCNGA	7 cut(s)	175, 323, 367, 523, 785, 907, 1067
Hpy188III	TCNNGA	5 cut(s)	119, 134, 161, 692, 716
Hpy8I	GTNNAC	4 cut(s)	673, 769, 856, 1107
HpyAV	CCTTC	6 cut(s)	274, 372, 399, 719, 973, 1007
HpyCH4III	ACNGT	2 cut(s)	1111, 1151
HpyCH4V	TGCA	8 cut(s)	4, 90, 167, 232, 494, 739, 992, 1124
HpyF10VI	GCNNNNNNNGC	2 cut(s)	10, 229
HpyF3I	CTNAG	2 cut(s)	143, 449
Hsp92II	CATG	9 cut(s)	13, 122, 208, 276, 302, 659, 751, 837, 871
HspAI	GCGC	1 cut(s)	593
Kzo9I	GATC	6 cut(s)	303, 313, 579, 706, 800, 1128
LmnI	GCTCC	2 cut(s)	552, 882
Lsp1109I	GCAGC	1 cut(s)	940
LweI	GCATC	2 cut(s)	40, 154
MaeI	CTAG	3 cut(s)	161, 209, 254
MaeIII	GTNAC	3 cut(s)	83, 659, 757
MalI	GATC	6 cut(s)	305, 315, 581, 708, 802, 1130
MboI	GATC	6 cut(s)	303, 313, 579, 706, 800, 1128
MboII	GAAGA	9 cut(s)	231, 274, 387, 586, 589, 634, 716, 788, 1010
MfeI	CAATTG	1 cut(s)	762
MflI	RGATCY	2 cut(s)	303, 313
MlyI	GAGTC	1 cut(s)	924
Mph1103I	ATGCAT	1 cut(s)	6
MroXI	GAANNNNTTC	1 cut(s)	180
MseI	TTAA	6 cut(s)	24, 95, 104, 195, 923, 1159
MslI	CAYNNNNRTG	1 cut(s)	746
MspR9I	CCNGG	1 cut(s)	47
MunI	CAATTG	1 cut(s)	762
Mva1269I	GAATGC	1 cut(s)	741
MvaI	CCWGG	1 cut(s)	47
MwoI	GCNNNNNNNGC	2 cut(s)	10, 229
NcoI	CCATGG	1 cut(s)	655
NdeI	CATATG	1 cut(s)	40
NdeII	GATC	6 cut(s)	303, 313, 579, 706, 800, 1128
NlaIII	CATG	9 cut(s)	13, 122, 208, 276, 302, 659, 751, 837, 871
NlaIV	GGNNCC	2 cut(s)	463, 844
NmuCI	GTSAC	1 cut(s)	757
NsiI	ATGCAT	1 cut(s)	6
NspI	RCATGY	2 cut(s)	13, 871
NspV	TTCGAA	1 cut(s)	1092
PagI	TCATGA	1 cut(s)	118
PciI	ACATGT	1 cut(s)	867
PctI	GAATGC	1 cut(s)	741
PdmI	GAANNNNTTC	1 cut(s)	180
PfeI	GAWTC	1 cut(s)	476
PkrI	GCNGC	1 cut(s)	930
PleI	GAGTC	1 cut(s)	923
PpsI	GAGTC	1 cut(s)	923
PpuMI	RGGWCCY	1 cut(s)	843
PscI	ACATGT	1 cut(s)	867
Psp5II	RGGWCCY	1 cut(s)	843
Psp6I	CCWGG	1 cut(s)	45
PspFI	CCCAGC	1 cut(s)	219
PspGI	CCWGG	1 cut(s)	45
PspN4I	GGNNCC	2 cut(s)	463, 844
PspPI	GGNCC	3 cut(s)	386, 461, 843
PspPPI	RGGWCCY	1 cut(s)	843
PsuI	RGATCY	2 cut(s)	303, 313
RsaI	GTAC	3 cut(s)	69, 148, 770
RsaNI	GTAC	3 cut(s)	68, 147, 769
RseI	CAYNNNNRTG	1 cut(s)	746
SaqAI	TTAA	6 cut(s)	24, 95, 104, 195, 923, 1159
SatI	GCNGC	1 cut(s)	929
Sau3AI	GATC	6 cut(s)	303, 313, 579, 706, 800, 1128
Sau96I	GGNCC	3 cut(s)	386, 461, 843
ScaI	AGTACT	1 cut(s)	148
SchI	GAGTC	1 cut(s)	924
ScrFI	CCNGG	1 cut(s)	47
SfaNI	GCATC	2 cut(s)	40, 154
SfuI	TTCGAA	1 cut(s)	1092
SinI	GGWCC	2 cut(s)	386, 843
SmiMI	CAYNNNNRTG	1 cut(s)	746
SmlI	CTYRAG	1 cut(s)	664
SmoI	CTYRAG	1 cut(s)	664
SspI	AATATT	2 cut(s)	180, 537
SspMI	CTAG	3 cut(s)	161, 209, 254
StyD4I	CCNGG	1 cut(s)	45
StyI	CCWWGG	2 cut(s)	655, 846
TaaI	ACNGT	2 cut(s)	1111, 1151
TaqI	TCGA	3 cut(s)	572, 1092, 1131
TatI	WGTACW	2 cut(s)	67, 146
TfiI	GAWTC	1 cut(s)	476
Tru1I	TTAA	6 cut(s)	24, 95, 104, 195, 923, 1159
Tru9I	TTAA	6 cut(s)	24, 95, 104, 195, 923, 1159
TscAI	CASTG	2 cut(s)	535, 748
TseFI	GTSAC	1 cut(s)	757
TseI	GCWGC	1 cut(s)	928
Tsp45I	GTSAC	1 cut(s)	757
TspDTI	ATGAA	3 cut(s)	103, 107, 412
TspRI	CASTG	2 cut(s)	535, 748
VpaK11BI	GGWCC	2 cut(s)	386, 843
XapI	RAATTY	3 cut(s)	20, 524, 641
XbaI	TCTAGA	1 cut(s)	160
XceI	RCATGY	2 cut(s)	13, 871
XmnI	GAANNNNTTC	1 cut(s)	180
XspI	CTAG	3 cut(s)	161, 209, 254
ZrmI	AGTACT	1 cut(s)	148
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.