Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0014195

Physical Location & Seq

Genomic Coordinates Forward (+)

19698789 .. 19700078

Gene Structure 1290 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000028170

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1029 bp

ATGTCAGAATCCCATCAATCTTCTTCTGTTAAACTTCCCATGCTAGACATCTCTCAGCCTTTGAACCCATTATCTTCTGATTTGCCTTCTCTTTCTGAAGCCTTGAAAACATGGGGTTTCTTCCACATCACCAATCATGGGATCTCCAAAGATCTTTTCACAAAACTACATTCACTATCAAATCACCTTTTCAGCCTCCCTTCTGATACCAAACTCAAACTTGGTCCTTTCTCTTCCATAAAAAGTTATACCCCTCATTTCATAGCTTCCCCCTTCTTTGAAAGCCTCAGAGTTTCTGGCCCAAAGTTCTCTGAGTCTGCTCAAACTTCTGCAGATGTTCTCTTTGACCAGCACAACTCGGAATTCAGTGAGGTATTACATGAATATGGGAGCAAGATGGCAGAATTATCTCAAAAAATCATAAAGATTGCTTTGATGAGCTTGGGGGAGGGTTTTAAGAAAAAATACTATGAATCTGAATTTCAGAATTGCCATGGTTACTTGAGAATGAATAACTACTCATCACCTTCAGAAGGTTTTGAAGATCATGGTGAGGTTGAAGGACTTGGAATGCACACCGACATGAGCTGTGTTACAATTGTGTACCAAGATGAAATTGGTGGACTTCAAGTGAGATCAAAAGAGGGTAAGTGGATGGACATAAGCCCATGTGAGGGAACCTTGGTGGTGAACGTAGGTGACATGTTTCAAGCTTGGAGCAATGAGAAGTTGAGATCATCAGAACATAGAGTGATTCTCAAGCAGCCTGTAAACCGCTTTTCGCTAGCCTTCTTCTGGTGTTTTGAAGATCAGAAGGTGATTTCTGCACCAGATGATGTGGTGGGAGAAGGGAATGTGAGGATTTACGAGCCGTTTGTTTGCTCGGATTATTTGAAATTCAGAGAGAGCAATGAGAGAGGGAAGTTTGAGAAGGTTGGGTTTACTGTGAGGGGTTTTGCAGGGATTAAAGACCAGCAAGTTATAAAATGTGACAGTGGAAAAGGAATTGGAAGTGTGGCTTGTAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0006082 GO:0006629 GO:0006720 GO:0006721 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009314 GO:0009416 GO:0009628 GO:0009685 GO:0009686 GO:0009719 GO:0009725 GO:0009739 GO:0009740 GO:0009755 GO:0009987 GO:0010033 GO:0010476 GO:0010817 GO:0016053 GO:0016101 GO:0016102 GO:0016114 GO:0016491 GO:0016705 GO:0016706 GO:0016707 GO:0019752 GO:0023052 GO:0032870 GO:0033993 GO:0042221 GO:0042445 GO:0042446 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0046394 GO:0050789 GO:0050794 GO:0050896 GO:0051213 GO:0051716 GO:0055114 GO:0065007 GO:0065008 GO:0070887 GO:0071229 GO:0071310 GO:0071370 GO:0071396 GO:0071495 GO:0071704 GO:1901576 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

343

Amino Acids

38.37

Weight (kDa)

5.86

Isoelectric Point (pI)

43.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	12 - 85	1.2e-12	non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy	PF03171	170 - 267	6e-24	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0014195)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G23340 AT4G23340
fragaria_vesca	FvH4_7g14240
malus_domestica	MD01G1060300.v1.1 MD07G1137400.v1.1
prunus_persica	Prupe.2G170200_v2.0.a1
pyrus_communis	pycom01g09040
rosa_chinensis	RchiOBHm_Chr1g0355221
rosa_laevigata	RLG00000028170
rosa_multiflora	Rmu_sc0003115.1_g000042
rosa_roxburghii	Rroxscaffold_4G00300580
rosa_rugosa	Rorug01G0245600
rosa_samantha	Rh1AG258100 Rh1BG227700 Rh1CG241800 Rh1DG255500
rosa_wichuraiana	Rw1G022770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	983
AciI	CCGC	1 cut(s)	775
AclWI	GGATC	1 cut(s)	149
AcsI	RAATTY	3 cut(s)	362, 479, 896
AcuI	CTGAAG	2 cut(s)	117, 513
AfaI	GTAC	1 cut(s)	605
AfiI	CCNNNNNNNGG	5 cut(s)	138, 533, 673, 674, 795
AflIII	ACRYGT	1 cut(s)	702
AgsI	TTSAA	9 cut(s)	64, 106, 281, 542, 560, 629, 710, 806, 895
AjuI	GAANNNNNNNTTGG	2 cut(s)	140, 172
AluBI	AGCT	4 cut(s)	266, 441, 588, 713
AluI	AGCT	4 cut(s)	266, 441, 588, 713
AlwI	GGATC	1 cut(s)	149
AoxI	GGCC	1 cut(s)	298
ApeKI	GCWGC	1 cut(s)	763
ApoI	RAATTY	3 cut(s)	362, 479, 896
AspS9I	GGNCC	2 cut(s)	224, 299
AsuHPI	GGTGA	7 cut(s)	121, 176, 516, 563, 700, 710, 829
AsuNHI	GCTAGC	1 cut(s)	784
AvaII	GGWCC	1 cut(s)	224
BbvI	GCAGC	1 cut(s)	775
BccI	CCATC	3 cut(s)	21, 391, 649
BceAI	ACGGC	1 cut(s)	856
BfaI	CTAG	2 cut(s)	44, 785
BfmI	CTRYAG	1 cut(s)	330
BglII	AGATCT	1 cut(s)	151
BisI	GCNGC	1 cut(s)	764
BlsI	GCNGC	1 cut(s)	765
Bme18I	GGWCC	1 cut(s)	224
BmgT120I	GGNCC	2 cut(s)	224, 299
BmiI	GGNNCC	1 cut(s)	679
BmtI	GCTAGC	1 cut(s)	788
BplI	GAGNNNNNCTC	2 cut(s)	741, 773
BpuEI	CTTGAG	2 cut(s)	523, 743
BsaJI	CCNNGG	2 cut(s)	493, 681
Bsc4I	CCNNNNNNNGG	5 cut(s)	138, 533, 673, 674, 795
Bse3DI	GCAATG	2 cut(s)	727, 916
BseDI	CCNNGG	2 cut(s)	493, 681
BseGI	GGATG	1 cut(s)	660
BseLI	CCNNNNNNNGG	5 cut(s)	138, 533, 673, 674, 795
BseMI	GCAATG	2 cut(s)	727, 916
BseMII	CTCAG	3 cut(s)	68, 301, 303
BseXI	GCAGC	1 cut(s)	775
BsgI	GTGCAG	1 cut(s)	810
BshFI	GGCC	1 cut(s)	300
BslI	CCNNNNNNNGG	5 cut(s)	138, 533, 673, 674, 795
BsmI	GAATGC	1 cut(s)	576
BsnI	GGCC	1 cut(s)	300
Bsp143I	GATC	6 cut(s)	141, 151, 544, 635, 734, 808
Bsp19I	CCATGG	1 cut(s)	493
BspACI	CCGC	1 cut(s)	775
BspANI	GGCC	1 cut(s)	300
BspCNI	CTCAG	3 cut(s)	67, 300, 304
BspLI	GGNNCC	1 cut(s)	679
BspMAI	CTGCAG	1 cut(s)	334
BspOI	GCTAGC	1 cut(s)	788
BspPI	GGATC	1 cut(s)	149
BsrDI	GCAATG	2 cut(s)	727, 916
BssECI	CCNNGG	2 cut(s)	493, 681
BssMI	GATC	6 cut(s)	141, 151, 544, 635, 734, 808
BssT1I	CCWWGG	2 cut(s)	493, 681
Bst4CI	ACNGT	2 cut(s)	946, 995
Bst6I	CTCTTC	1 cut(s)	238
BstC8I	GCNNGC	1 cut(s)	786
BstDEI	CTNAG	3 cut(s)	54, 287, 312
BstDSI	CCRYGG	1 cut(s)	493
BstENI	CCTNNNNNAGG	1 cut(s)	531
BstF5I	GGATG	1 cut(s)	660
BstKTI	GATC	6 cut(s)	144, 154, 547, 638, 737, 811
BstMBI	GATC	6 cut(s)	141, 151, 544, 635, 734, 808
BstNSI	RCATGY	1 cut(s)	706
BstSFI	CTRYAG	1 cut(s)	330
BstV1I	GCAGC	1 cut(s)	775
BstX2I	RGATCY	2 cut(s)	141, 151
BstYI	RGATCY	2 cut(s)	141, 151
BsuRI	GGCC	1 cut(s)	300
BtgI	CCRYGG	1 cut(s)	493
BtsCI	GGATG	1 cut(s)	660
BtsIMutI	CAGTG	2 cut(s)	373, 1000
Cac8I	GCNNGC	1 cut(s)	786
Cfr13I	GGNCC	2 cut(s)	224, 299
Csp6I	GTAC	1 cut(s)	604
CviAII	CATG	9 cut(s)	40, 111, 137, 380, 494, 548, 583, 669, 703
CviQI	GTAC	1 cut(s)	604
DdeI	CTNAG	3 cut(s)	54, 287, 312
DpnI	GATC	6 cut(s)	143, 153, 546, 637, 736, 810
DpnII	GATC	6 cut(s)	141, 151, 544, 635, 734, 808
Eam1104I	CTCTTC	1 cut(s)	238
EarI	CTCTTC	1 cut(s)	238
Eco130I	CCWWGG	2 cut(s)	493, 681
Eco47I	GGWCC	1 cut(s)	224
Eco57I	CTGAAG	2 cut(s)	117, 513
EcoNI	CCTNNNNNAGG	1 cut(s)	531
EcoRI	GAATTC	1 cut(s)	362
EcoT14I	CCWWGG	2 cut(s)	493, 681
ErhI	CCWWGG	2 cut(s)	493, 681
FaeI	CATG	9 cut(s)	43, 114, 140, 383, 497, 551, 586, 672, 706
FalI	AAGNNNNNCTT	1 cut(s)	1003
FatI	CATG	9 cut(s)	39, 110, 136, 379, 493, 547, 582, 668, 702
Fnu4HI	GCNGC	1 cut(s)	764
FokI	GGATG	1 cut(s)	667
Fsp4HI	GCNGC	1 cut(s)	764
FspBI	CTAG	2 cut(s)	44, 785
GluI	GCNGC	1 cut(s)	764
HaeIII	GGCC	1 cut(s)	300
Hin1II	CATG	9 cut(s)	43, 114, 140, 383, 497, 551, 586, 672, 706
HindIII	AAGCTT	1 cut(s)	711
HinfI	GANTC	4 cut(s)	8, 314, 473, 754
HphI	GGTGA	7 cut(s)	121, 176, 516, 563, 700, 710, 829
Hpy166II	GTNNAC	5 cut(s)	604, 623, 691, 772, 942
Hpy8I	GTNNAC	5 cut(s)	604, 623, 691, 772, 942
HpyCH4III	ACNGT	2 cut(s)	946, 995
HpyCH4IV	ACGT	1 cut(s)	693
HpyCH4V	TGCA	4 cut(s)	332, 574, 827, 959
HpyF3I	CTNAG	3 cut(s)	54, 287, 312
HpySE526I	ACGT	1 cut(s)	693
Hsp92II	CATG	9 cut(s)	43, 114, 140, 383, 497, 551, 586, 672, 706
Kzo9I	GATC	6 cut(s)	141, 151, 544, 635, 734, 808
LmnI	GCTCC	2 cut(s)	390, 717
LpnPI	CCDG	7 cut(s)	282, 362, 780, 781, 843, 945, 986
Lsp1109I	GCAGC	1 cut(s)	775
MaeI	CTAG	2 cut(s)	44, 785
MaeII	ACGT	1 cut(s)	693
MaeIII	GTNAC	4 cut(s)	497, 592, 698, 989
MalI	GATC	6 cut(s)	143, 153, 546, 637, 736, 810
MboI	GATC	6 cut(s)	141, 151, 544, 635, 734, 808
MboII	GAAGA	8 cut(s)	12, 15, 66, 112, 225, 554, 784, 818
MfeI	CAATTG	1 cut(s)	597
MflI	RGATCY	2 cut(s)	141, 151
MluCI	AATT	9 cut(s)	362, 404, 479, 487, 597, 615, 896, 1005, 1024
MlyI	GAGTC	1 cut(s)	323
MseI	TTAA	3 cut(s)	30, 456, 966
MslI	CAYNNNNRTG	2 cut(s)	384, 581
MunI	CAATTG	1 cut(s)	597
Mva1269I	GAATGC	1 cut(s)	576
NcoI	CCATGG	1 cut(s)	493
NdeII	GATC	6 cut(s)	141, 151, 544, 635, 734, 808
NheI	GCTAGC	1 cut(s)	784
NlaIII	CATG	9 cut(s)	43, 114, 140, 383, 497, 551, 586, 672, 706
NlaIV	GGNNCC	1 cut(s)	679
NmuCI	GTSAC	2 cut(s)	698, 989
NspI	RCATGY	1 cut(s)	706
PciI	ACATGT	1 cut(s)	702
PctI	GAATGC	1 cut(s)	576
PfeI	GAWTC	3 cut(s)	8, 473, 754
PkrI	GCNGC	1 cut(s)	765
PleI	GAGTC	1 cut(s)	322
PpsI	GAGTC	1 cut(s)	322
PscI	ACATGT	1 cut(s)	702
PsiI	TTATAA	1 cut(s)	983
PspN4I	GGNNCC	1 cut(s)	679
PspPI	GGNCC	2 cut(s)	224, 299
PstI	CTGCAG	1 cut(s)	334
PsuI	RGATCY	2 cut(s)	141, 151
RsaI	GTAC	1 cut(s)	605
RsaNI	GTAC	1 cut(s)	604
RseI	CAYNNNNRTG	2 cut(s)	384, 581
SaqAI	TTAA	3 cut(s)	30, 456, 966
SatI	GCNGC	1 cut(s)	764
Sau3AI	GATC	6 cut(s)	141, 151, 544, 635, 734, 808
Sau96I	GGNCC	2 cut(s)	224, 299
SchI	GAGTC	1 cut(s)	323
SfcI	CTRYAG	1 cut(s)	330
SinI	GGWCC	1 cut(s)	224
SmiMI	CAYNNNNRTG	2 cut(s)	384, 581
SmlI	CTYRAG	2 cut(s)	502, 758
SmoI	CTYRAG	2 cut(s)	502, 758
Sse9I	AATT	9 cut(s)	362, 404, 479, 487, 597, 615, 896, 1005, 1024
SsiI	CCGC	1 cut(s)	775
SspMI	CTAG	2 cut(s)	44, 785
StyI	CCWWGG	2 cut(s)	493, 681
TaaI	ACNGT	2 cut(s)	946, 995
TaiI	ACGT	1 cut(s)	696
TasI	AATT	9 cut(s)	362, 404, 479, 487, 597, 615, 896, 1005, 1024
TfiI	GAWTC	3 cut(s)	8, 473, 754
Tru1I	TTAA	3 cut(s)	30, 456, 966
Tru9I	TTAA	3 cut(s)	30, 456, 966
TscAI	CASTG	2 cut(s)	373, 1000
TseFI	GTSAC	2 cut(s)	698, 989
TseI	GCWGC	1 cut(s)	763
Tsp45I	GTSAC	2 cut(s)	698, 989
TspDTI	ATGAA	5 cut(s)	250, 396, 486, 524, 627
TspRI	CASTG	2 cut(s)	373, 1000
VpaK11BI	GGWCC	1 cut(s)	224
XagI	CCTNNNNNAGG	1 cut(s)	531
XapI	RAATTY	3 cut(s)	362, 479, 896
XceI	RCATGY	1 cut(s)	706
XcmI	CCANNNNNNNNNTGG	1 cut(s)	614
XspI	CTAG	2 cut(s)	44, 785

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.