Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0003342

Physical Location & Seq

Genomic Coordinates Reverse (-)

12979993 .. 12983103

Gene Structure 3111 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g14770.t3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 576 bp

ATGGGAGGTTGCTGCTGTTCTTCCAGAAAAGCTCATCTCAATGGAGCACCTGTGTATTTCTATTGCTCACCAGCTTTGGAAGAGGAAGAATCCCTAACATCCCGTGATGTTGCAGCCTCTGCAATAACTGCAGGAATCCTAGTTAATCTGGGTCTGGAAACATCAACACCAGACACTTACAGATCCCCTCCTACACCCCTGCCATATGATATGGTCTTCGGATGTCCACAATCAACAGATTCTGATTCTGTCAGAGACACAAATAGTTGTAGTAGTTTTAAAACTTCTACTTGTGGAGATCCTGAGGAATCAGACTGCAAAGTTCTTGAAAATTCTTTACCAGTTTCACCAAAGAAGCTAAAACTTTCAGCCTCGAATGAAGCTAATGTTTTAGCAGGAGAAGATGAGGATGATTGTCCAATTTGTCTTGAAGAGTATGAAAGAGAGAATCCTGAATTCACCACAAAATGCGGACACCACTATCACCTCTCCTGCATTCTTGAGTGGATGGAAAGAAGTGACGCCTGTCCTATATGTGATCAGGAACTGTTATTGGACCATACCTATAGTTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2 zf-rbx1

Protein Analysis

192

Amino Acids

20.89

Weight (kDa)

4.37

Isoelectric Point (pI)

62.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-rbx1	PF12678	136 - 179	4.1e-10	RING-H2 zinc finger domain
zf-RING_2	PF13639	137 - 179	3e-13	Ring finger domain
zf-RING_5	PF14634	138 - 181	5.7e-07	zinc-RING finger domain
zf-RING_11	PF17123	138 - 166	2.8e-07	RING-like zinc finger
zf-C3HC4_2	PF13923	139 - 179	2.4e-10	Zinc finger, C3HC4 type (RING finger)
zf-C3HC4	PF00097	139 - 179	7e-09	Zinc finger, C3HC4 type (RING finger)
zf-RING_UBOX	PF13445	139 - 170	2.5e-08	RING-type zinc-finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0003342)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G00335 AT4G00335 AT4G00335
fragaria_vesca	FvH4_7g14770 FvH4_7g14770 FvH4_7g14770 FvH4_7g14770 FvH4_7g14770 FvH4_7g14770 FvH4_7g14770
malus_domestica	MD01G1066500.v1.1 MD07G1134100.v1.1
prunus_persica	Prupe.2G173400_v2.0.a1 Prupe.2G173400_v2.0.a1 Prupe.2G173400_v2.0.a1 Prupe.2G173400_v2.0.a1 Prupe.2G173400_v2.0.a1 Prupe.2G173400_v2.0.a1 Prupe.2G173400_v2.0.a1 Prupe.2G173400_v2.0.a1 Prupe.2G173400_v2.0.a1 Prupe.2G173400_v2.0.a1 Prupe.2G173400_v2.0.a1 Prupe.2G173400_v2.0.a1 Prupe.2G173400_v2.0.a1
pyrus_communis	pycom07g13170
rosa_chinensis	RchiOBHm_Chr1g0356711
rosa_laevigata	RLG00000028085
rosa_multiflora	Rmu_sc0005718.1_g000002
rosa_roxburghii	Rroxscaffold_4G00299380
rosa_rugosa	Rorug01G0251000
rosa_samantha	Rh1AG264900 Rh1BG232400 Rh1CG248600 Rh1DG260100
rosa_wichuraiana	Rw1G023440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	471
AclWI	GGATC	2 cut(s)	177, 293
AcsI	RAATTY	2 cut(s)	331, 455
AcyI	GRCGYC	1 cut(s)	522
AgsI	TTSAA	2 cut(s)	329, 431
AluBI	AGCT	4 cut(s)	32, 74, 358, 383
AluI	AGCT	4 cut(s)	32, 74, 358, 383
Alw21I	GWGCWC	1 cut(s)	49
Alw26I	GTCTC	1 cut(s)	249
AlwI	GGATC	2 cut(s)	177, 293
AlwNI	CAGNNNCTG	3 cut(s)	119, 242, 547
ApeKI	GCWGC	2 cut(s)	12, 113
ApoI	RAATTY	2 cut(s)	331, 455
AspS9I	GGNCC	1 cut(s)	556
AsuHPI	GGTGA	4 cut(s)	60, 339, 451, 476
AvaII	GGWCC	1 cut(s)	556
AxyI	CCTNAGG	1 cut(s)	303
BbsI	GAAGAC	1 cut(s)	208
Bbv12I	GWGCWC	1 cut(s)	49
BbvI	GCAGC	1 cut(s)	125
BccI	CCATC	1 cut(s)	502
BclI	TGATCA	1 cut(s)	538
BcoDI	GTCTC	1 cut(s)	249
BfaI	CTAG	1 cut(s)	140
BfmI	CTRYAG	2 cut(s)	129, 565
BisI	GCNGC	2 cut(s)	13, 114
BlsI	GCNGC	2 cut(s)	14, 115
Bme18I	GGWCC	1 cut(s)	556
BmgT120I	GGNCC	1 cut(s)	556
BoxI	GACNNNNGTC	1 cut(s)	525
BpiI	GAAGAC	1 cut(s)	208
BpuEI	CTTGAG	1 cut(s)	521
BsaHI	GRCGYC	1 cut(s)	522
BsaXI	ACNNNNNCTCC	2 cut(s)	36, 66
Bse1I	ACTGG	1 cut(s)	341
Bse21I	CCTNAGG	1 cut(s)	303
BseGI	GGATG	4 cut(s)	98, 227, 415, 513
BseMII	CTCAG	1 cut(s)	294
BseNI	ACTGG	1 cut(s)	341
BseXI	GCAGC	1 cut(s)	125
BsiHKAI	GWGCWC	1 cut(s)	49
BsmAI	GTCTC	1 cut(s)	249
BsmI	GAATGC	1 cut(s)	495
Bsp1286I	GDGCHC	1 cut(s)	49
Bsp143I	GATC	3 cut(s)	182, 298, 538
BspACI	CCGC	1 cut(s)	471
BspCNI	CTCAG	1 cut(s)	295
BspMAI	CTGCAG	1 cut(s)	133
BspPI	GGATC	2 cut(s)	177, 293
BsrI	ACTGG	1 cut(s)	341
BssMI	GATC	3 cut(s)	182, 298, 538
BssNI	GRCGYC	1 cut(s)	522
Bst4CI	ACNGT	1 cut(s)	549
Bst6I	CTCTTC	2 cut(s)	75, 426
BstACI	GRCGYC	1 cut(s)	522
BstAPI	GCANNNNNTGC	2 cut(s)	119, 128
BstDEI	CTNAG	1 cut(s)	303
BstF5I	GGATG	4 cut(s)	98, 227, 415, 513
BstKTI	GATC	3 cut(s)	185, 301, 541
BstMAI	GTCTC	1 cut(s)	249
BstMBI	GATC	3 cut(s)	182, 298, 538
BstMWI	GCNNNNNNNGC	2 cut(s)	119, 128
BstPAI	GACNNNNGTC	1 cut(s)	525
BstSFI	CTRYAG	2 cut(s)	129, 565
BstV1I	GCAGC	1 cut(s)	125
BstV2I	GAAGAC	1 cut(s)	208
BstX2I	RGATCY	2 cut(s)	182, 298
BstYI	RGATCY	2 cut(s)	182, 298
Bsu36I	CCTNAGG	1 cut(s)	303
BtsCI	GGATG	4 cut(s)	98, 227, 415, 513
CaiI	CAGNNNCTG	3 cut(s)	119, 242, 547
Cfr13I	GGNCC	1 cut(s)	556
CseI	GACGC	1 cut(s)	530
CviJI	RGCY	6 cut(s)	32, 74, 116, 358, 371, 383
CviKI_1	RGCY	6 cut(s)	32, 74, 116, 358, 371, 383
DdeI	CTNAG	1 cut(s)	303
DpnI	GATC	3 cut(s)	184, 300, 540
DpnII	GATC	3 cut(s)	182, 298, 538
DraI	TTTAAA	1 cut(s)	280
Eam1104I	CTCTTC	2 cut(s)	75, 426
EarI	CTCTTC	2 cut(s)	75, 426
Eco47I	GGWCC	1 cut(s)	556
Eco81I	CCTNAGG	1 cut(s)	303
EcoRI	GAATTC	1 cut(s)	455
FaiI	YATR	8 cut(s)	205, 207, 212, 438, 533, 535, 561, 567
FauNDI	CATATG	1 cut(s)	205
FbaI	TGATCA	1 cut(s)	538
Fnu4HI	GCNGC	2 cut(s)	13, 114
FokI	GGATG	4 cut(s)	85, 234, 422, 520
Fsp4HI	GCNGC	2 cut(s)	13, 114
FspBI	CTAG	1 cut(s)	140
GluI	GCNGC	2 cut(s)	13, 114
HgaI	GACGC	1 cut(s)	530
Hin1I	GRCGYC	1 cut(s)	522
HinfI	GANTC	6 cut(s)	89, 135, 239, 245, 308, 448
HphI	GGTGA	4 cut(s)	60, 339, 451, 476
Hpy166II	GTNNAC	1 cut(s)	227
Hpy188I	TCNGA	4 cut(s)	221, 244, 254, 313
Hpy188III	TCNNGA	8 cut(s)	24, 155, 302, 326, 428, 452, 500, 542
Hpy8I	GTNNAC	1 cut(s)	227
HpyCH4III	ACNGT	1 cut(s)	549
HpyCH4V	TGCA	5 cut(s)	113, 122, 131, 318, 495
HpyF10VI	GCNNNNNNNGC	2 cut(s)	119, 128
HpyF3I	CTNAG	1 cut(s)	303
Hsp92I	GRCGYC	1 cut(s)	522
Ksp22I	TGATCA	1 cut(s)	538
Kzo9I	GATC	3 cut(s)	182, 298, 538
LmnI	GCTCC	1 cut(s)	44
Lsp1109I	GCAGC	1 cut(s)	125
MaeI	CTAG	1 cut(s)	140
MaeIII	GTNAC	1 cut(s)	518
MalI	GATC	3 cut(s)	184, 300, 540
MboI	GATC	3 cut(s)	182, 298, 538
MboII	GAAGA	6 cut(s)	12, 92, 98, 208, 413, 443
MflI	RGATCY	2 cut(s)	182, 298
MhlI	GDGCHC	1 cut(s)	49
MluCI	AATT	3 cut(s)	331, 420, 455
MnlI	CCTC	7 cut(s)	76, 127, 198, 298, 382, 400, 497
MseI	TTAA	2 cut(s)	144, 279
MslI	CAYNNNNRTG	1 cut(s)	39
Mva1269I	GAATGC	1 cut(s)	495
MwoI	GCNNNNNNNGC	2 cut(s)	119, 128
NdeI	CATATG	1 cut(s)	205
NdeII	GATC	3 cut(s)	182, 298, 538
NmuCI	GTSAC	1 cut(s)	518
PctI	GAATGC	1 cut(s)	495
PfeI	GAWTC	6 cut(s)	89, 135, 239, 245, 308, 448
PkrI	GCNGC	2 cut(s)	14, 115
PshAI	GACNNNNGTC	1 cut(s)	525
PspPI	GGNCC	1 cut(s)	556
PstI	CTGCAG	1 cut(s)	133
PstNI	CAGNNNCTG	3 cut(s)	119, 242, 547
PsuI	RGATCY	2 cut(s)	182, 298
RseI	CAYNNNNRTG	1 cut(s)	39
SaqAI	TTAA	2 cut(s)	144, 279
SatI	GCNGC	2 cut(s)	13, 114
Sau3AI	GATC	3 cut(s)	182, 298, 538
Sau96I	GGNCC	1 cut(s)	556
SduI	GDGCHC	1 cut(s)	49
SetI	ASST	8 cut(s)	10, 34, 52, 76, 360, 385, 489, 566
SfcI	CTRYAG	2 cut(s)	129, 565
SinI	GGWCC	1 cut(s)	556
SmiMI	CAYNNNNRTG	1 cut(s)	39
SmlI	CTYRAG	1 cut(s)	500
SmoI	CTYRAG	1 cut(s)	500
Sse9I	AATT	3 cut(s)	331, 420, 455
SsiI	CCGC	1 cut(s)	471
SspMI	CTAG	1 cut(s)	140
TaaI	ACNGT	1 cut(s)	549
TaqI	TCGA	1 cut(s)	374
TasI	AATT	3 cut(s)	331, 420, 455
TfiI	GAWTC	6 cut(s)	89, 135, 239, 245, 308, 448
Tru1I	TTAA	2 cut(s)	144, 279
Tru9I	TTAA	2 cut(s)	144, 279
TseFI	GTSAC	1 cut(s)	518
TseI	GCWGC	2 cut(s)	12, 113
Tsp45I	GTSAC	1 cut(s)	518
TspDTI	ATGAA	2 cut(s)	393, 453
VpaK11BI	GGWCC	1 cut(s)	556
XapI	RAATTY	2 cut(s)	331, 455
XspI	CTAG	1 cut(s)	140

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.