Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0003342

Physical Location & Seq

Genomic Coordinates Reverse (-)

17025568 .. 17029223

Gene Structure 3656 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1066500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 588 bp

ATGGGAGGTTGTTGCTGTTCTTCCAGAAAAGCTCGTGTGCAACTGCATGGAGCACCTGTATATATCTATGTCTGTTGTCCTCCGGTTTTGGAAGAGCAAGAGTCGTTAAGATCTCATGATGTCACAGCCTCCGCAATCAGTGCAGGACTTCTGGTTTGTTGGGATTTGGAATCATCAATACCTGACACTTACAGACCCCCTCCTCCACCTTTGCCATATAATATGGTCTTTGGATCAACAGATTCTGATTCTGCCAGGGAAACAATTAGTTGCAGTAGTTTTGATACTTCCGCTACTTGTGGAGATCTTGGGGAATCAGACTGCAAAGTTCAAGAAGGTTCTTTGGATATCTCACCGAAGAAGTTAGGACTTTCCAAATCAAATGAACCTCATGGTTTAGAAAAAGAAGACGAGGATGTTTGTCCTATCTGTCTCGAAGAGTACGAAACCGAGAATCCAAGGTTTATCACAAAATGCAAACACCACTATCACCTCTCGTGTATCCTTGAGTGGATGGAAAGAAGTGATGCCTGTCCTATATGTGATCAGGAAGTCATTTCACCAATGAAGAAGGTAAAAGAAGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2 zf-rbx1

Protein Analysis

196

Amino Acids

21.57

Weight (kDa)

4.75

Isoelectric Point (pI)

60.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-rbx1	PF12678	138 - 181	7.6e-10	RING-H2 zinc finger domain
zf-RING_2	PF13639	140 - 181	1.6e-12	Ring finger domain
zf-C3HC4_2	PF13923	141 - 181	7.8e-10	Zinc finger, C3HC4 type (RING finger)
zf-C3HC4	PF00097	141 - 181	1.6e-08	Zinc finger, C3HC4 type (RING finger)
zf-RING_5	PF14634	141 - 183	1.9e-07	zinc-RING finger domain
zf-RING_11	PF17123	141 - 168	1.4e-07	RING-like zinc finger
zf-RING_UBOX	PF13445	141 - 172	4.6e-07	RING-type zinc-finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Publication-ready

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Orthologous Genes (Group: OG0003342)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G00335 AT4G00335 AT4G00335
fragaria_vesca	FvH4_7g14770 FvH4_7g14770 FvH4_7g14770 FvH4_7g14770 FvH4_7g14770 FvH4_7g14770 FvH4_7g14770
malus_domestica	MD01G1066500.v1.1 MD07G1134100.v1.1
prunus_persica	Prupe.2G173400_v2.0.a1 Prupe.2G173400_v2.0.a1 Prupe.2G173400_v2.0.a1 Prupe.2G173400_v2.0.a1 Prupe.2G173400_v2.0.a1 Prupe.2G173400_v2.0.a1 Prupe.2G173400_v2.0.a1 Prupe.2G173400_v2.0.a1 Prupe.2G173400_v2.0.a1 Prupe.2G173400_v2.0.a1 Prupe.2G173400_v2.0.a1 Prupe.2G173400_v2.0.a1 Prupe.2G173400_v2.0.a1
pyrus_communis	pycom07g13170
rosa_chinensis	RchiOBHm_Chr1g0356711
rosa_laevigata	RLG00000028085
rosa_multiflora	Rmu_sc0005718.1_g000002
rosa_roxburghii	Rroxscaffold_4G00299380
rosa_rugosa	Rorug01G0251000
rosa_samantha	Rh1AG264900 Rh1BG232400 Rh1CG248600 Rh1DG260100
rosa_wichuraiana	Rw1G023440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	132, 291
AclWI	GGATC	1 cut(s)	241
AfaI	GTAC	1 cut(s)	443
AgsI	TTSAA	1 cut(s)	332
AjnI	CCWGG	1 cut(s)	254
AluBI	AGCT	1 cut(s)	32
AluI	AGCT	1 cut(s)	32
Alw21I	GWGCWC	1 cut(s)	55
Alw26I	GTCTC	1 cut(s)	437
AlwI	GGATC	1 cut(s)	241
AlwNI	CAGNNNCTG	1 cut(s)	245
ArsI	GACNNNNNNTTYG	2 cut(s)	138, 170
AsuHPI	GGTGA	3 cut(s)	345, 482, 552
BauI	CACGAG	2 cut(s)	33, 496
BbsI	GAAGAC	1 cut(s)	414
Bbv12I	GWGCWC	1 cut(s)	55
BccI	CCATC	1 cut(s)	508
BciT130I	CCWGG	1 cut(s)	256
BciVI	GTATCC	1 cut(s)	512
BclI	TGATCA	1 cut(s)	544
BcoDI	GTCTC	1 cut(s)	437
BfuI	GTATCC	1 cut(s)	512
BglII	AGATCT	2 cut(s)	110, 304
Bme1390I	CCNGG	1 cut(s)	256
BmrFI	CCNGG	1 cut(s)	256
BmsI	GCATC	1 cut(s)	517
BpiI	GAAGAC	1 cut(s)	414
BpuEI	CTTGAG	1 cut(s)	527
BsaJI	CCNNGG	2 cut(s)	255, 458
BsaWI	WCCGGW	1 cut(s)	82
BsaXI	ACNNNNNCTCC	2 cut(s)	42, 72
BseBI	CCWGG	1 cut(s)	256
BseDI	CCNNGG	2 cut(s)	255, 458
BseGI	GGATG	2 cut(s)	421, 519
BseRI	GAGGAG	1 cut(s)	192
BsgI	GTGCAG	1 cut(s)	162
BsiHKAI	GWGCWC	1 cut(s)	55
BsiSI	CCGG	1 cut(s)	83
BsmAI	GTCTC	1 cut(s)	437
Bsp1286I	GDGCHC	1 cut(s)	55
Bsp143I	GATC	4 cut(s)	110, 233, 304, 544
BspACI	CCGC	2 cut(s)	132, 291
BspHI	TCATGA	1 cut(s)	115
BspPI	GGATC	1 cut(s)	241
BspQI	GCTCTTC	1 cut(s)	87
BssECI	CCNNGG	2 cut(s)	255, 458
BssMI	GATC	4 cut(s)	110, 233, 304, 544
BssSI	CACGAG	2 cut(s)	33, 496
BssT1I	CCWWGG	1 cut(s)	458
Bst2BI	CACGAG	2 cut(s)	33, 496
Bst2UI	CCWGG	1 cut(s)	256
Bst6I	CTCTTC	3 cut(s)	87, 432, 576
BstAPI	GCANNNNNTGC	1 cut(s)	140
BstF5I	GGATG	2 cut(s)	421, 519
BstKTI	GATC	4 cut(s)	113, 236, 307, 547
BstMAI	GTCTC	1 cut(s)	437
BstMBI	GATC	4 cut(s)	110, 233, 304, 544
BstMWI	GCNNNNNNNGC	1 cut(s)	140
BstNI	CCWGG	1 cut(s)	256
BstSCI	CCNGG	1 cut(s)	254
BstV2I	GAAGAC	1 cut(s)	414
BstX2I	RGATCY	2 cut(s)	110, 304
BstYI	RGATCY	2 cut(s)	110, 304
BsuI	GTATCC	1 cut(s)	512
BtsCI	GGATG	2 cut(s)	421, 519
BtsIMutI	CAGTG	1 cut(s)	145
CaiI	CAGNNNCTG	1 cut(s)	245
CciI	TCATGA	1 cut(s)	115
Csp6I	GTAC	1 cut(s)	442
CviAII	CATG	3 cut(s)	47, 116, 392
CviJI	RGCY	2 cut(s)	32, 128
CviKI_1	RGCY	2 cut(s)	32, 128
CviQI	GTAC	1 cut(s)	442
DpnI	GATC	4 cut(s)	112, 235, 306, 546
DpnII	GATC	4 cut(s)	110, 233, 304, 544
Eam1104I	CTCTTC	3 cut(s)	87, 432, 576
EarI	CTCTTC	3 cut(s)	87, 432, 576
Eco130I	CCWWGG	1 cut(s)	458
Eco32I	GATATC	1 cut(s)	349
EcoRII	CCWGG	1 cut(s)	254
EcoRV	GATATC	1 cut(s)	349
EcoT14I	CCWWGG	1 cut(s)	458
ErhI	CCWWGG	1 cut(s)	458
FaeI	CATG	3 cut(s)	50, 119, 395
FatI	CATG	3 cut(s)	46, 115, 391
FbaI	TGATCA	1 cut(s)	544
FokI	GGATG	2 cut(s)	428, 526
HapII	CCGG	1 cut(s)	83
Hin1II	CATG	3 cut(s)	50, 119, 395
HinfI	GANTC	6 cut(s)	101, 170, 242, 248, 314, 454
HpaII	CCGG	1 cut(s)	83
HphI	GGTGA	3 cut(s)	345, 482, 552
Hpy188I	TCNGA	2 cut(s)	247, 319
Hpy188III	TCNNGA	5 cut(s)	24, 116, 332, 434, 548
HpyAV	CCTTC	2 cut(s)	329, 565
HpyCH4V	TGCA	6 cut(s)	40, 46, 143, 273, 324, 477
HpyF10VI	GCNNNNNNNGC	1 cut(s)	140
Hsp92II	CATG	3 cut(s)	50, 119, 395
Ksp22I	TGATCA	1 cut(s)	544
Kzo9I	GATC	4 cut(s)	110, 233, 304, 544
LguI	GCTCTTC	1 cut(s)	87
LmnI	GCTCC	1 cut(s)	50
LweI	GCATC	1 cut(s)	517
MaeIII	GTNAC	1 cut(s)	121
MalI	GATC	4 cut(s)	112, 235, 306, 546
MboI	GATC	4 cut(s)	110, 233, 304, 544
MboII	GAAGA	6 cut(s)	12, 104, 370, 419, 449, 580
MflI	RGATCY	2 cut(s)	110, 304
MhlI	GDGCHC	1 cut(s)	55
MluCI	AATT	1 cut(s)	264
MlyI	GAGTC	1 cut(s)	110
MnlI	CCTC	7 cut(s)	90, 139, 210, 213, 399, 406, 503
MseI	TTAA	1 cut(s)	107
MspI	CCGG	1 cut(s)	83
MspR9I	CCNGG	1 cut(s)	256
MvaI	CCWGG	1 cut(s)	256
MwoI	GCNNNNNNNGC	1 cut(s)	140
NdeII	GATC	4 cut(s)	110, 233, 304, 544
NlaIII	CATG	3 cut(s)	50, 119, 395
NmuCI	GTSAC	1 cut(s)	121
PagI	TCATGA	1 cut(s)	115
PciSI	GCTCTTC	1 cut(s)	87
PcsI	WCGNNNNNNNCGW	1 cut(s)	441
PfeI	GAWTC	5 cut(s)	170, 242, 248, 314, 454
PleI	GAGTC	1 cut(s)	109
PpsI	GAGTC	1 cut(s)	109
Psp6I	CCWGG	1 cut(s)	254
PspGI	CCWGG	1 cut(s)	254
PstNI	CAGNNNCTG	1 cut(s)	245
PsuI	RGATCY	2 cut(s)	110, 304
RsaI	GTAC	1 cut(s)	443
RsaNI	GTAC	1 cut(s)	442
SapI	GCTCTTC	1 cut(s)	87
SaqAI	TTAA	1 cut(s)	107
Sau3AI	GATC	4 cut(s)	110, 233, 304, 544
SchI	GAGTC	1 cut(s)	110
ScrFI	CCNGG	1 cut(s)	256
SduI	GDGCHC	1 cut(s)	55
SfaNI	GCATC	1 cut(s)	517
SmlI	CTYRAG	1 cut(s)	506
SmoI	CTYRAG	1 cut(s)	506
Sse9I	AATT	1 cut(s)	264
SsiI	CCGC	2 cut(s)	132, 291
StyD4I	CCNGG	1 cut(s)	254
StyI	CCWWGG	1 cut(s)	458
TaqI	TCGA	1 cut(s)	435
TasI	AATT	1 cut(s)	264
TfiI	GAWTC	5 cut(s)	170, 242, 248, 314, 454
Tru1I	TTAA	1 cut(s)	107
Tru9I	TTAA	1 cut(s)	107
TscAI	CASTG	1 cut(s)	145
TseFI	GTSAC	1 cut(s)	121
Tsp45I	GTSAC	1 cut(s)	121
TspDTI	ATGAA	2 cut(s)	399, 581
TspRI	CASTG	1 cut(s)	145

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.