Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0003342

Physical Location & Seq

Genomic Coordinates Reverse (-)

21980049 .. 21983091

Gene Structure 3043 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G173400.13

Sequence Viewer

CDS Protein Promoter (2k)

Length: 630 bp

ATGGGAGGTTGTTGTTGTTCTTCCAGAAAAGCTCATATGCAACTGCACGGAGCACCTGTGTATTTCTATTGTCCACCAGTTTTGGAAGAGCAAGAGTCCTTAAGATCTCATGATGTCGCAGCCTCTGCACTCAGTGCAGGACTCCTGGTTCATTGGGATCTGGAAGCATCAACACCAGACACTTACAGACCCCCTCCTCCACCTTTGCCATATGATATGGTCTTTGGATGTTCACGATCAACAGATTCTGATTCTGTCAGGGAAACAATCAGTTGCAGTAGTTTTGATACATCAGCTACTTGTGGAGATCTTGGGGAATCAGACTGCAAAGTTCAAGAAAATTCTTTGAATACCTCACCAAAGAAGTTAGAACTTTCAAAATCAAATGAACCTCATGTTTTAGCAAAAGAAGACGAGGATGTCTGCCCCATTTGTCTTGAAGGTGCTGTGCCATCAGTAGCTCAGGGAACTAATTCTTATTTTACTATGAAACAGAGAATCCAAAATTTATCACAAAATGCGAGCACCACTATCACCTCTGTTGTATTCTTGAGTGGATGGAAAGAAGTGATGCCTGTCCTATATGTGATCAGGAACTGGGGATTGACCATAGCTTTAGTTTGTAGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2 zf-rbx1

Protein Analysis

210

Amino Acids

22.71

Weight (kDa)

4.94

Isoelectric Point (pI)

48.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003342)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G00335 AT4G00335 AT4G00335
fragaria_vesca	FvH4_7g14770 FvH4_7g14770 FvH4_7g14770 FvH4_7g14770 FvH4_7g14770 FvH4_7g14770 FvH4_7g14770
malus_domestica	MD01G1066500.v1.1 MD07G1134100.v1.1
prunus_persica	Prupe.2G173400_v2.0.a1 Prupe.2G173400_v2.0.a1 Prupe.2G173400_v2.0.a1 Prupe.2G173400_v2.0.a1 Prupe.2G173400_v2.0.a1 Prupe.2G173400_v2.0.a1 Prupe.2G173400_v2.0.a1 Prupe.2G173400_v2.0.a1 Prupe.2G173400_v2.0.a1 Prupe.2G173400_v2.0.a1 Prupe.2G173400_v2.0.a1 Prupe.2G173400_v2.0.a1 Prupe.2G173400_v2.0.a1
pyrus_communis	pycom07g13170
rosa_chinensis	RchiOBHm_Chr1g0356711
rosa_laevigata	RLG00000028085
rosa_multiflora	Rmu_sc0005718.1_g000002
rosa_roxburghii	Rroxscaffold_4G00299380
rosa_rugosa	Rorug01G0251000
rosa_samantha	Rh1AG264900 Rh1BG232400 Rh1CG248600 Rh1DG260100
rosa_wichuraiana	Rw1G023440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	419
AclWI	GGATC	1 cut(s)	165
AcsI	RAATTY	2 cut(s)	340, 505
AdeI	CACNNNGTG	1 cut(s)	134
AflII	CTTAAG	1 cut(s)	100
AgsI	TTSAA	4 cut(s)	335, 349, 378, 440
AjnI	CCWGG	1 cut(s)	144
AloI	GAACNNNNNNTCC	2 cut(s)	132, 164
AluBI	AGCT	5 cut(s)	32, 296, 461, 614, 627
AluI	AGCT	5 cut(s)	32, 296, 461, 614, 627
Alw21I	GWGCWC	2 cut(s)	55, 527
AlwI	GGATC	1 cut(s)	165
AlwNI	CAGNNNCTG	3 cut(s)	125, 248, 597
ApeKI	GCWGC	1 cut(s)	119
ApoI	RAATTY	2 cut(s)	340, 505
Asp700I	GAANNNNTTC	1 cut(s)	472
AsuHPI	GGTGA	2 cut(s)	348, 526
BbsI	GAAGAC	1 cut(s)	417
Bbv12I	GWGCWC	2 cut(s)	55, 527
BbvI	GCAGC	1 cut(s)	131
BccI	CCATC	2 cut(s)	460, 552
BciT130I	CCWGG	1 cut(s)	146
BclI	TGATCA	1 cut(s)	588
BfrI	CTTAAG	1 cut(s)	100
BglII	AGATCT	2 cut(s)	104, 307
BisI	GCNGC	1 cut(s)	120
BlsI	GCNGC	1 cut(s)	121
Bme1390I	CCNGG	1 cut(s)	146
BmrFI	CCNGG	1 cut(s)	146
BmrI	ACTGGG	1 cut(s)	607
BmsI	GCATC	2 cut(s)	176, 561
BmuI	ACTGGG	1 cut(s)	607
BpiI	GAAGAC	1 cut(s)	417
Bpu10I	CCTNAGC	1 cut(s)	462
BpuEI	CTTGAG	1 cut(s)	571
BsaXI	ACNNNNNCTCC	2 cut(s)	42, 72
Bse1I	ACTGG	2 cut(s)	77, 602
BseBI	CCWGG	1 cut(s)	146
BseGI	GGATG	3 cut(s)	233, 424, 563
BseMII	CTCAG	2 cut(s)	145, 476
BseNI	ACTGG	2 cut(s)	77, 602
BseRI	GAGGAG	1 cut(s)	186
BseXI	GCAGC	1 cut(s)	131
BsgI	GTGCAG	3 cut(s)	29, 111, 156
BsiHKAI	GWGCWC	2 cut(s)	55, 527
Bsp1286I	GDGCHC	2 cut(s)	55, 527
Bsp143I	GATC	5 cut(s)	104, 157, 236, 307, 588
BspCNI	CTCAG	2 cut(s)	144, 475
BspHI	TCATGA	1 cut(s)	109
BspPI	GGATC	1 cut(s)	165
BspQI	GCTCTTC	1 cut(s)	81
BspTI	CTTAAG	1 cut(s)	100
BsrI	ACTGG	2 cut(s)	77, 602
BssMI	GATC	5 cut(s)	104, 157, 236, 307, 588
Bst2UI	CCWGG	1 cut(s)	146
Bst6I	CTCTTC	1 cut(s)	81
BstAFI	CTTAAG	1 cut(s)	100
BstAPI	GCANNNNNTGC	2 cut(s)	125, 134
BstC8I	GCNNGC	1 cut(s)	523
BstDEI	CTNAG	2 cut(s)	131, 462
BstF5I	GGATG	3 cut(s)	233, 424, 563
BstKTI	GATC	5 cut(s)	107, 160, 239, 310, 591
BstMBI	GATC	5 cut(s)	104, 157, 236, 307, 588
BstMWI	GCNNNNNNNGC	2 cut(s)	125, 134
BstNI	CCWGG	1 cut(s)	146
BstSCI	CCNGG	1 cut(s)	144
BstV1I	GCAGC	1 cut(s)	131
BstV2I	GAAGAC	1 cut(s)	417
BstX2I	RGATCY	3 cut(s)	104, 157, 307
BstYI	RGATCY	3 cut(s)	104, 157, 307
BtsCI	GGATG	3 cut(s)	233, 424, 563
BtsIMutI	CAGTG	1 cut(s)	139
Cac8I	GCNNGC	1 cut(s)	523
CaiI	CAGNNNCTG	3 cut(s)	125, 248, 597
CciI	TCATGA	1 cut(s)	109
CspCI	CAANNNNNGTGG	2 cut(s)	63, 98
CviAII	CATG	2 cut(s)	110, 395
CviJI	RGCY	6 cut(s)	32, 122, 296, 461, 614, 627
CviKI_1	RGCY	6 cut(s)	32, 122, 296, 461, 614, 627
DdeI	CTNAG	2 cut(s)	131, 462
DpnI	GATC	5 cut(s)	106, 159, 238, 309, 590
DpnII	GATC	5 cut(s)	104, 157, 236, 307, 588
DraIII	CACNNNGTG	1 cut(s)	134
DrdI	GACNNNNNNGTC	1 cut(s)	419
DseDI	GACNNNNNNGTC	1 cut(s)	419
Eam1104I	CTCTTC	1 cut(s)	81
EarI	CTCTTC	1 cut(s)	81
EcoRII	CCWGG	1 cut(s)	144
FaeI	CATG	2 cut(s)	113, 398
FatI	CATG	2 cut(s)	109, 394
FauNDI	CATATG	2 cut(s)	36, 211
FbaI	TGATCA	1 cut(s)	588
Fnu4HI	GCNGC	1 cut(s)	120
FokI	GGATG	3 cut(s)	240, 431, 570
Fsp4HI	GCNGC	1 cut(s)	120
GluI	GCNGC	1 cut(s)	120
Hin1II	CATG	2 cut(s)	113, 398
HinfI	GANTC	6 cut(s)	95, 141, 245, 251, 317, 498
HphI	GGTGA	2 cut(s)	348, 526
Hpy166II	GTNNAC	2 cut(s)	74, 233
Hpy188I	TCNGA	2 cut(s)	250, 322
Hpy188III	TCNNGA	8 cut(s)	24, 110, 161, 234, 335, 437, 550, 592
Hpy8I	GTNNAC	2 cut(s)	74, 233
HpyAV	CCTTC	1 cut(s)	434
HpyCH4V	TGCA	6 cut(s)	40, 46, 128, 137, 276, 327
HpyF10VI	GCNNNNNNNGC	2 cut(s)	125, 134
HpyF3I	CTNAG	2 cut(s)	131, 462
Hsp92II	CATG	2 cut(s)	113, 398
Ksp22I	TGATCA	1 cut(s)	588
Kzo9I	GATC	5 cut(s)	104, 157, 236, 307, 588
LguI	GCTCTTC	1 cut(s)	81
LmnI	GCTCC	1 cut(s)	50
Lsp1109I	GCAGC	1 cut(s)	131
LweI	GCATC	2 cut(s)	176, 561
MalI	GATC	5 cut(s)	106, 159, 238, 309, 590
MboI	GATC	5 cut(s)	104, 157, 236, 307, 588
MboII	GAAGA	3 cut(s)	12, 98, 422
MflI	RGATCY	3 cut(s)	104, 157, 307
MhlI	GDGCHC	2 cut(s)	55, 527
MluCI	AATT	3 cut(s)	340, 472, 505
MlyI	GAGTC	2 cut(s)	104, 135
MnlI	CCTC	7 cut(s)	133, 204, 207, 364, 402, 409, 547
MroXI	GAANNNNTTC	1 cut(s)	472
MseI	TTAA	1 cut(s)	101
MspCI	CTTAAG	1 cut(s)	100
MspR9I	CCNGG	1 cut(s)	146
MvaI	CCWGG	1 cut(s)	146
MwoI	GCNNNNNNNGC	2 cut(s)	125, 134
NdeI	CATATG	2 cut(s)	36, 211
NdeII	GATC	5 cut(s)	104, 157, 236, 307, 588
NlaIII	CATG	2 cut(s)	113, 398
PagI	TCATGA	1 cut(s)	109
PciSI	GCTCTTC	1 cut(s)	81
PdmI	GAANNNNTTC	1 cut(s)	472
PfeI	GAWTC	4 cut(s)	245, 251, 317, 498
PkrI	GCNGC	1 cut(s)	121
PleI	GAGTC	2 cut(s)	103, 135
PpsI	GAGTC	2 cut(s)	103, 135
Psp6I	CCWGG	1 cut(s)	144
PspGI	CCWGG	1 cut(s)	144
PstNI	CAGNNNCTG	3 cut(s)	125, 248, 597
PsuI	RGATCY	3 cut(s)	104, 157, 307
SapI	GCTCTTC	1 cut(s)	81
SaqAI	TTAA	1 cut(s)	101
SatI	GCNGC	1 cut(s)	120
Sau3AI	GATC	5 cut(s)	104, 157, 236, 307, 588
SchI	GAGTC	2 cut(s)	104, 135
ScrFI	CCNGG	1 cut(s)	146
SduI	GDGCHC	2 cut(s)	55, 527
SfaNI	GCATC	2 cut(s)	176, 561
SmlI	CTYRAG	2 cut(s)	100, 550
SmoI	CTYRAG	2 cut(s)	100, 550
Sse9I	AATT	3 cut(s)	340, 472, 505
StyD4I	CCNGG	1 cut(s)	144
TasI	AATT	3 cut(s)	340, 472, 505
TfiI	GAWTC	4 cut(s)	245, 251, 317, 498
Tru1I	TTAA	1 cut(s)	101
Tru9I	TTAA	1 cut(s)	101
TscAI	CASTG	1 cut(s)	139
TseI	GCWGC	1 cut(s)	119
TspDTI	ATGAA	3 cut(s)	140, 402, 503
TspGWI	ACGGA	1 cut(s)	63
TspRI	CASTG	1 cut(s)	139
Vha464I	CTTAAG	1 cut(s)	100
XapI	RAATTY	2 cut(s)	340, 505
XmnI	GAANNNNTTC	1 cut(s)	472

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.