Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0003342

Physical Location & Seq

Genomic Coordinates Reverse (-)

49150657 .. 49151571

Gene Structure 915 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG264900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 369 bp

ATGGTCTTCGGATGTCCACAATCAACAGATTCTGATTCTGTCAGAGAAACAAATAGTTGCAGTAGTTTTGAAACTTCACCTACATGTGGAGATCTTGAGGAATCAGACTGCAAAGTTCAAGAAAGTTCTTTGCCGATCTCACCAAAGAAGTTAGAACTTTCAAAATCCAATAAAGTAAATATTTTAGCAGAAGAAGATGAGGATGTTTGTCCAATTTGTCTTGAAGAGTATGAAACAGAGAATCCAGATTTCACCACAAAATGCGAACACCACTATCACCTCTCCTGCATTCTTGAGTGGATAGAAAGAAGTGATGCCTGTCCTATATGTGATCAGGAACTGGTATTGGACCATTCCTATAGTTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2 zf-rbx1

Protein Analysis

122

Amino Acids

13.76

Weight (kDa)

4.21

Isoelectric Point (pI)

79.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-rbx1	PF12678	66 - 110	1.1e-10	RING-H2 zinc finger domain
zf-RING_2	PF13639	69 - 110	6.3e-12	Ring finger domain
zf-C3HC4_2	PF13923	70 - 110	2e-09	Zinc finger, C3HC4 type (RING finger)
zf-C3HC4	PF00097	70 - 110	8.1e-09	Zinc finger, C3HC4 type (RING finger)
zf-RING_UBOX	PF13445	70 - 100	6.1e-07	RING-type zinc-finger
zf-RING_11	PF17123	70 - 97	2.7e-06	RING-like zinc finger
zf-RING_5	PF14634	70 - 112	7.2e-06	zinc-RING finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0003342)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G00335 AT4G00335 AT4G00335
fragaria_vesca	FvH4_7g14770 FvH4_7g14770 FvH4_7g14770 FvH4_7g14770 FvH4_7g14770 FvH4_7g14770 FvH4_7g14770
malus_domestica	MD01G1066500.v1.1 MD07G1134100.v1.1
prunus_persica	Prupe.2G173400_v2.0.a1 Prupe.2G173400_v2.0.a1 Prupe.2G173400_v2.0.a1 Prupe.2G173400_v2.0.a1 Prupe.2G173400_v2.0.a1 Prupe.2G173400_v2.0.a1 Prupe.2G173400_v2.0.a1 Prupe.2G173400_v2.0.a1 Prupe.2G173400_v2.0.a1 Prupe.2G173400_v2.0.a1 Prupe.2G173400_v2.0.a1 Prupe.2G173400_v2.0.a1 Prupe.2G173400_v2.0.a1
pyrus_communis	pycom07g13170
rosa_chinensis	RchiOBHm_Chr1g0356711
rosa_laevigata	RLG00000028085
rosa_multiflora	Rmu_sc0005718.1_g000002
rosa_roxburghii	Rroxscaffold_4G00299380
rosa_rugosa	Rorug01G0251000
rosa_samantha	Rh1AG264900 Rh1BG232400 Rh1CG248600 Rh1DG260100
rosa_wichuraiana	Rw1G023440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfiI	CCNNNNNNNGG	1 cut(s)	86
AflIII	ACRYGT	1 cut(s)	83
AgsI	TTSAA	4 cut(s)	71, 119, 162, 224
AlwNI	CAGNNNCTG	2 cut(s)	32, 340
AspS9I	GGNCC	1 cut(s)	349
AsuHPI	GGTGA	4 cut(s)	69, 132, 244, 269
AvaII	GGWCC	1 cut(s)	349
BclI	TGATCA	1 cut(s)	331
BfmI	CTRYAG	1 cut(s)	358
BglII	AGATCT	1 cut(s)	91
Bme18I	GGWCC	1 cut(s)	349
BmgT120I	GGNCC	1 cut(s)	349
BmsI	GCATC	1 cut(s)	304
BpuEI	CTTGAG	2 cut(s)	116, 314
Bsc4I	CCNNNNNNNGG	1 cut(s)	86
Bse1I	ACTGG	1 cut(s)	345
BseGI	GGATG	2 cut(s)	17, 208
BseLI	CCNNNNNNNGG	1 cut(s)	86
BseNI	ACTGG	1 cut(s)	345
BslI	CCNNNNNNNGG	1 cut(s)	86
BsmI	GAATGC	1 cut(s)	288
Bsp143I	GATC	3 cut(s)	91, 135, 331
BsrI	ACTGG	1 cut(s)	345
BssMI	GATC	3 cut(s)	91, 135, 331
Bst6I	CTCTTC	1 cut(s)	219
BstF5I	GGATG	2 cut(s)	17, 208
BstKTI	GATC	3 cut(s)	94, 138, 334
BstMBI	GATC	3 cut(s)	91, 135, 331
BstNSI	RCATGY	1 cut(s)	87
BstSFI	CTRYAG	1 cut(s)	358
BstX2I	RGATCY	1 cut(s)	91
BstYI	RGATCY	1 cut(s)	91
BtsCI	GGATG	2 cut(s)	17, 208
CaiI	CAGNNNCTG	2 cut(s)	32, 340
Cfr13I	GGNCC	1 cut(s)	349
CviAII	CATG	1 cut(s)	84
DpnI	GATC	3 cut(s)	93, 137, 333
DpnII	GATC	3 cut(s)	91, 135, 331
Eam1104I	CTCTTC	1 cut(s)	219
EarI	CTCTTC	1 cut(s)	219
Eco47I	GGWCC	1 cut(s)	349
FaeI	CATG	1 cut(s)	87
FaiI	YATR	5 cut(s)	85, 231, 326, 328, 360
FatI	CATG	1 cut(s)	83
FbaI	TGATCA	1 cut(s)	331
FokI	GGATG	2 cut(s)	24, 215
Hin1II	CATG	1 cut(s)	87
HinfI	GANTC	4 cut(s)	29, 35, 101, 241
HphI	GGTGA	4 cut(s)	69, 132, 244, 269
Hpy166II	GTNNAC	1 cut(s)	17
Hpy188I	TCNGA	4 cut(s)	11, 34, 44, 106
Hpy188III	TCNNGA	6 cut(s)	95, 119, 221, 245, 293, 335
Hpy8I	GTNNAC	1 cut(s)	17
HpyCH4V	TGCA	3 cut(s)	60, 111, 288
Hsp92II	CATG	1 cut(s)	87
Ksp22I	TGATCA	1 cut(s)	331
Kzo9I	GATC	3 cut(s)	91, 135, 331
LpnPI	CCDG	5 cut(s)	258, 298, 320, 326, 331
LweI	GCATC	1 cut(s)	304
MalI	GATC	3 cut(s)	93, 137, 333
MboI	GATC	3 cut(s)	91, 135, 331
MboII	GAAGA	3 cut(s)	203, 206, 236
MflI	RGATCY	1 cut(s)	91
MluCI	AATT	1 cut(s)	213
MnlI	CCTC	3 cut(s)	91, 193, 290
MslI	CAYNNNNRTG	1 cut(s)	82
Mva1269I	GAATGC	1 cut(s)	288
NdeII	GATC	3 cut(s)	91, 135, 331
NlaIII	CATG	1 cut(s)	87
NspI	RCATGY	1 cut(s)	87
PciI	ACATGT	1 cut(s)	83
PctI	GAATGC	1 cut(s)	288
PfeI	GAWTC	4 cut(s)	29, 35, 101, 241
PscI	ACATGT	1 cut(s)	83
PspPI	GGNCC	1 cut(s)	349
PstNI	CAGNNNCTG	2 cut(s)	32, 340
PsuI	RGATCY	1 cut(s)	91
RseI	CAYNNNNRTG	1 cut(s)	82
Sau3AI	GATC	3 cut(s)	91, 135, 331
Sau96I	GGNCC	1 cut(s)	349
SetI	ASST	2 cut(s)	82, 282
SfaNI	GCATC	1 cut(s)	304
SfcI	CTRYAG	1 cut(s)	358
SinI	GGWCC	1 cut(s)	349
SmiMI	CAYNNNNRTG	1 cut(s)	82
SmlI	CTYRAG	2 cut(s)	95, 293
SmoI	CTYRAG	2 cut(s)	95, 293
Sse9I	AATT	1 cut(s)	213
SspI	AATATT	1 cut(s)	181
TasI	AATT	1 cut(s)	213
TfiI	GAWTC	4 cut(s)	29, 35, 101, 241
TspDTI	ATGAA	1 cut(s)	246
VpaK11BI	GGWCC	1 cut(s)	349
XceI	RCATGY	1 cut(s)	87

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.