Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0003342

Physical Location & Seq

Genomic Coordinates Forward (+)

18449202 .. 18450943

Gene Structure 1742 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000028085

Sequence Viewer

CDS Protein Promoter (2k)

Length: 783 bp

ATGGGAGGTTGCTGCTGTTCTTCCAGAAAAGCTCATCTCCATGGAGCACCTGTGTATTTCTATTGTTCACCAGCTTTGGAAGAGGAAGAGTCCTTAACATCCCATGATGTTGCAGCCTCTGCAATAACTGCAGGAATCCTAGTTAATTTGGATCTGGAAACATCAATACCAGACACTTACAGATCCCCTCCTACACCCCTGCCATATGATATGGTCTTCGGATGTCCACAATCAACAGATTCTGATTCTGTCAGAGAAACAAATAGTTGCAGTAGTTTTGAAACTTCACTTACATGTGGAGATCTTGAGGAATCAGACTGCAAAGTTCAAGAAAGTTCTTTGCCGATCTCACCAAAGAAGTTAGAACTTTCAAAATCCAATAAAGTAAATGTTTTAGCAGAAGAAGATGAGGATGTTTGTCCAATTTGTCTTGAAGAGTATGAAACAGAGAATCCAGATTTCACCACAAAATGCGAACACCACTATCACCTCTCCTGCATTCTTGAGTGGATAGAAAGAAGTGATGCCTGTCCTATATGTGATCAGGAACTGTGTAACTGGTGGAGTGCAGATTCATTATTACTTGGTCATGCTCACATTGAAGACAGGGCTGTGCATTGTGAGTGGAGCGATCAAGAAGTTAAGACCAAGGCCATGGAAAGCAGAGAACCTATTGAGTTAATGCCGGTGCTGCCTTCAATGCTGGTTTGCTACATCTCTTCTGTACATATCAAGTTTGTTGTGACATTCAGCTTTTGCCATCTGTTGTTATACGCCGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2 zf-rbx1

Protein Analysis

261

Amino Acids

29.01

Weight (kDa)

4.51

Isoelectric Point (pI)

69.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-rbx1	PF12678	137 - 180	6.5e-10	RING-H2 zinc finger domain
zf-RING_2	PF13639	139 - 180	2.4e-11	Ring finger domain
zf-C3HC4_2	PF13923	140 - 180	7.5e-09	Zinc finger, C3HC4 type (RING finger)
zf-C3HC4	PF00097	140 - 180	3.1e-08	Zinc finger, C3HC4 type (RING finger)
zf-RING_UBOX	PF13445	140 - 170	2.1e-06	RING-type zinc-finger
zf-RING_11	PF17123	140 - 167	8.5e-06	RING-like zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003342)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G00335 AT4G00335 AT4G00335
fragaria_vesca	FvH4_7g14770 FvH4_7g14770 FvH4_7g14770 FvH4_7g14770 FvH4_7g14770 FvH4_7g14770 FvH4_7g14770
malus_domestica	MD01G1066500.v1.1 MD07G1134100.v1.1
prunus_persica	Prupe.2G173400_v2.0.a1 Prupe.2G173400_v2.0.a1 Prupe.2G173400_v2.0.a1 Prupe.2G173400_v2.0.a1 Prupe.2G173400_v2.0.a1 Prupe.2G173400_v2.0.a1 Prupe.2G173400_v2.0.a1 Prupe.2G173400_v2.0.a1 Prupe.2G173400_v2.0.a1 Prupe.2G173400_v2.0.a1 Prupe.2G173400_v2.0.a1 Prupe.2G173400_v2.0.a1 Prupe.2G173400_v2.0.a1
pyrus_communis	pycom07g13170
rosa_chinensis	RchiOBHm_Chr1g0356711
rosa_laevigata	RLG00000028085
rosa_multiflora	Rmu_sc0005718.1_g000002
rosa_roxburghii	Rroxscaffold_4G00299380
rosa_rugosa	Rorug01G0251000
rosa_samantha	Rh1AG264900 Rh1BG232400 Rh1CG248600 Rh1DG260100
rosa_wichuraiana	Rw1G023440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	777
AclWI	GGATC	2 cut(s)	159, 177
AfaI	GTAC	1 cut(s)	726
AflIII	ACRYGT	1 cut(s)	293
AgsI	TTSAA	6 cut(s)	281, 329, 372, 434, 602, 699
AluBI	AGCT	3 cut(s)	32, 74, 753
AluI	AGCT	3 cut(s)	32, 74, 753
Alw21I	GWGCWC	1 cut(s)	49
AlwI	GGATC	2 cut(s)	159, 177
AlwNI	CAGNNNCTG	3 cut(s)	119, 242, 550
AoxI	GGCC	1 cut(s)	651
ApeKI	GCWGC	3 cut(s)	12, 113, 691
AsuHPI	GGTGA	4 cut(s)	60, 342, 454, 479
BbsI	GAAGAC	2 cut(s)	208, 609
Bbv12I	GWGCWC	1 cut(s)	49
BbvI	GCAGC	2 cut(s)	125, 678
BccI	CCATC	1 cut(s)	768
BclI	TGATCA	1 cut(s)	541
BfaI	CTAG	1 cut(s)	140
BfmI	CTRYAG	1 cut(s)	129
BglII	AGATCT	1 cut(s)	301
BisI	GCNGC	4 cut(s)	13, 114, 692, 777
BlsI	GCNGC	4 cut(s)	14, 115, 693, 778
BmsI	GCATC	1 cut(s)	514
BpiI	GAAGAC	2 cut(s)	208, 609
BpuEI	CTTGAG	2 cut(s)	326, 524
BsaJI	CCNNGG	3 cut(s)	40, 648, 654
BsaXI	ACNNNNNCTCC	2 cut(s)	36, 66
Bse118I	RCCGGY	1 cut(s)	685
Bse1I	ACTGG	1 cut(s)	563
BseDI	CCNNGG	3 cut(s)	40, 648, 654
BseGI	GGATG	3 cut(s)	98, 227, 418
BseNI	ACTGG	1 cut(s)	563
BseXI	GCAGC	2 cut(s)	125, 678
BsgI	GTGCAG	1 cut(s)	588
BshFI	GGCC	1 cut(s)	653
BsiHKAI	GWGCWC	1 cut(s)	49
BsiSI	CCGG	1 cut(s)	686
BsmI	GAATGC	1 cut(s)	498
BsnI	GGCC	1 cut(s)	653
Bsp1286I	GDGCHC	1 cut(s)	49
Bsp1407I	TGTACA	1 cut(s)	724
Bsp143I	GATC	6 cut(s)	151, 182, 301, 345, 541, 631
Bsp19I	CCATGG	2 cut(s)	40, 654
BspACI	CCGC	1 cut(s)	777
BspANI	GGCC	1 cut(s)	653
BspMAI	CTGCAG	1 cut(s)	133
BspPI	GGATC	2 cut(s)	159, 177
BsrFI	RCCGGY	1 cut(s)	685
BsrGI	TGTACA	1 cut(s)	724
BsrI	ACTGG	1 cut(s)	563
BssAI	RCCGGY	1 cut(s)	685
BssECI	CCNNGG	3 cut(s)	40, 648, 654
BssMI	GATC	6 cut(s)	151, 182, 301, 345, 541, 631
BssT1I	CCWWGG	3 cut(s)	40, 648, 654
Bst4CI	ACNGT	1 cut(s)	552
Bst6I	CTCTTC	4 cut(s)	75, 81, 429, 724
BstAPI	GCANNNNNTGC	2 cut(s)	119, 128
BstAUI	TGTACA	1 cut(s)	724
BstDSI	CCRYGG	2 cut(s)	40, 654
BstF5I	GGATG	3 cut(s)	98, 227, 418
BstKTI	GATC	6 cut(s)	154, 185, 304, 348, 544, 634
BstMBI	GATC	6 cut(s)	151, 182, 301, 345, 541, 631
BstMWI	GCNNNNNNNGC	4 cut(s)	119, 128, 691, 700
BstNSI	RCATGY	1 cut(s)	297
BstSFI	CTRYAG	1 cut(s)	129
BstV1I	GCAGC	2 cut(s)	125, 678
BstV2I	GAAGAC	2 cut(s)	208, 609
BstX2I	RGATCY	3 cut(s)	151, 182, 301
BstXI	CCANNNNNNTGG	1 cut(s)	655
BstYI	RGATCY	3 cut(s)	151, 182, 301
BsuRI	GGCC	1 cut(s)	653
BtgI	CCRYGG	2 cut(s)	40, 654
BtsCI	GGATG	3 cut(s)	98, 227, 418
CaiI	CAGNNNCTG	3 cut(s)	119, 242, 550
Cfr10I	RCCGGY	1 cut(s)	685
Csp6I	GTAC	1 cut(s)	725
CviAII	CATG	5 cut(s)	41, 104, 294, 590, 655
CviJI	RGCY	6 cut(s)	32, 74, 116, 611, 653, 753
CviKI_1	RGCY	6 cut(s)	32, 74, 116, 611, 653, 753
CviQI	GTAC	1 cut(s)	725
DpnI	GATC	6 cut(s)	153, 184, 303, 347, 543, 633
DpnII	GATC	6 cut(s)	151, 182, 301, 345, 541, 631
Eam1104I	CTCTTC	4 cut(s)	75, 81, 429, 724
EarI	CTCTTC	4 cut(s)	75, 81, 429, 724
Eco130I	CCWWGG	3 cut(s)	40, 648, 654
EcoT14I	CCWWGG	3 cut(s)	40, 648, 654
ErhI	CCWWGG	3 cut(s)	40, 648, 654
FaeI	CATG	5 cut(s)	44, 107, 297, 593, 658
FatI	CATG	5 cut(s)	40, 103, 293, 589, 654
FauNDI	CATATG	1 cut(s)	205
FbaI	TGATCA	1 cut(s)	541
Fnu4HI	GCNGC	4 cut(s)	13, 114, 692, 777
FokI	GGATG	3 cut(s)	85, 234, 425
Fsp4HI	GCNGC	4 cut(s)	13, 114, 692, 777
FspBI	CTAG	1 cut(s)	140
GluI	GCNGC	4 cut(s)	13, 114, 692, 777
HaeIII	GGCC	1 cut(s)	653
HapII	CCGG	1 cut(s)	686
Hin1II	CATG	5 cut(s)	44, 107, 297, 593, 658
HinfI	GANTC	7 cut(s)	89, 135, 239, 245, 311, 451, 572
HpaII	CCGG	1 cut(s)	686
HphI	GGTGA	4 cut(s)	60, 342, 454, 479
Hpy166II	GTNNAC	2 cut(s)	68, 227
Hpy188I	TCNGA	4 cut(s)	221, 244, 254, 316
Hpy188III	TCNNGA	9 cut(s)	24, 155, 305, 329, 431, 455, 503, 545, 635
Hpy8I	GTNNAC	2 cut(s)	68, 227
HpyAV	CCTTC	1 cut(s)	705
HpyCH4III	ACNGT	1 cut(s)	552
HpyCH4V	TGCA	8 cut(s)	113, 122, 131, 270, 321, 498, 569, 616
HpyF10VI	GCNNNNNNNGC	4 cut(s)	119, 128, 691, 700
Hsp92II	CATG	5 cut(s)	44, 107, 297, 593, 658
Ksp22I	TGATCA	1 cut(s)	541
Kzo9I	GATC	6 cut(s)	151, 182, 301, 345, 541, 631
LmnI	GCTCC	2 cut(s)	44, 627
Lsp1109I	GCAGC	2 cut(s)	125, 678
LweI	GCATC	1 cut(s)	514
MaeI	CTAG	1 cut(s)	140
MaeIII	GTNAC	2 cut(s)	554, 742
MalI	GATC	6 cut(s)	153, 184, 303, 347, 543, 633
MboI	GATC	6 cut(s)	151, 182, 301, 345, 541, 631
MboII	GAAGA	9 cut(s)	12, 92, 98, 208, 413, 416, 446, 614, 711
MflI	RGATCY	3 cut(s)	151, 182, 301
MhlI	GDGCHC	1 cut(s)	49
MluCI	AATT	2 cut(s)	145, 423
MlyI	GAGTC	1 cut(s)	98
MnlI	CCTC	6 cut(s)	76, 127, 198, 301, 403, 500
MseI	TTAA	4 cut(s)	95, 144, 642, 680
MslI	CAYNNNNRTG	2 cut(s)	39, 292
MspI	CCGG	1 cut(s)	686
Mva1269I	GAATGC	1 cut(s)	498
MwoI	GCNNNNNNNGC	4 cut(s)	119, 128, 691, 700
NcoI	CCATGG	2 cut(s)	40, 654
NdeI	CATATG	1 cut(s)	205
NdeII	GATC	6 cut(s)	151, 182, 301, 345, 541, 631
NlaIII	CATG	5 cut(s)	44, 107, 297, 593, 658
NmuCI	GTSAC	1 cut(s)	742
NspI	RCATGY	1 cut(s)	297
PciI	ACATGT	1 cut(s)	293
PctI	GAATGC	1 cut(s)	498
PfeI	GAWTC	6 cut(s)	135, 239, 245, 311, 451, 572
PkrI	GCNGC	4 cut(s)	14, 115, 693, 778
PleI	GAGTC	1 cut(s)	97
PpsI	GAGTC	1 cut(s)	97
PscI	ACATGT	1 cut(s)	293
PstI	CTGCAG	1 cut(s)	133
PstNI	CAGNNNCTG	3 cut(s)	119, 242, 550
PsuI	RGATCY	3 cut(s)	151, 182, 301
RsaI	GTAC	1 cut(s)	726
RsaNI	GTAC	1 cut(s)	725
RseI	CAYNNNNRTG	2 cut(s)	39, 292
SaqAI	TTAA	4 cut(s)	95, 144, 642, 680
SatI	GCNGC	4 cut(s)	13, 114, 692, 777
Sau3AI	GATC	6 cut(s)	151, 182, 301, 345, 541, 631
SchI	GAGTC	1 cut(s)	98
SduI	GDGCHC	1 cut(s)	49
SetI	ASST	7 cut(s)	10, 34, 52, 76, 492, 673, 755
SfaNI	GCATC	1 cut(s)	514
SfcI	CTRYAG	1 cut(s)	129
SmiMI	CAYNNNNRTG	2 cut(s)	39, 292
SmlI	CTYRAG	2 cut(s)	305, 503
SmoI	CTYRAG	2 cut(s)	305, 503
Sse9I	AATT	2 cut(s)	145, 423
SsiI	CCGC	1 cut(s)	777
SspMI	CTAG	1 cut(s)	140
StyI	CCWWGG	3 cut(s)	40, 648, 654
TaaI	ACNGT	1 cut(s)	552
TasI	AATT	2 cut(s)	145, 423
TatI	WGTACW	1 cut(s)	724
TauI	GCSGC	1 cut(s)	779
TfiI	GAWTC	6 cut(s)	135, 239, 245, 311, 451, 572
Tru1I	TTAA	4 cut(s)	95, 144, 642, 680
Tru9I	TTAA	4 cut(s)	95, 144, 642, 680
TseFI	GTSAC	1 cut(s)	742
TseI	GCWGC	3 cut(s)	12, 113, 691
Tsp45I	GTSAC	1 cut(s)	742
TspDTI	ATGAA	2 cut(s)	456, 564
XceI	RCATGY	1 cut(s)	297
XspI	CTAG	1 cut(s)	140

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.