Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0003342

Physical Location & Seq

Genomic Coordinates Forward (+)

19624182 .. 19627242

Gene Structure 3061 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1134100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 585 bp

ATGGGCGGTTGTTGCTGTTCTTGCAGAAAAGCTCATCTGCATGGAGCACCTGTATATATCTATTGTCCTCCGGTTTTGGAAGAGCAAGAGTCCTTAAGATCTCTTGATGTCACAGCCTCCACAATCAGTGCAGGACTCCTGGTTCATTGGGATCTGGAAGCATCAATACCAGACACTTACAGACCCCCTCCTCCACCTTTGCCATATGATATGGTCTTTGGATGTTCACGATCAACAGATTCTGATTCTGCCAGGGAAACAATTAGCTGCAGTAGTTTTGATACTTCAGCAACTTGTGGAGATCTTGGGGAATCAGACTGCAAAGTTCAAGAAAGTTCTTTGGATATCTCACCGAAGAAGTTAGAACTTTCAAAATCAAATGAACCTCATGTTTTAGAAAAAGAAGACGAAGATGTTTGTCCCATTTGTCTCGAAGAGTATGAAACAGAGAATCCAAAGTTTATCACAAAATGCGAACACCACTATCACCTCTCGTGTATCCTTCAGTGGATGGAAAGAAGTGATTCCTGTCCTATATGTGATCAGGAAGTCATTTCACCAACGAAGAAGGTAAAAGAAGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2 zf-rbx1

Protein Analysis

195

Amino Acids

21.61

Weight (kDa)

4.66

Isoelectric Point (pI)

66.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-rbx1	PF12678	137 - 180	3.1e-10	RING-H2 zinc finger domain
zf-RING_2	PF13639	139 - 180	1.2e-12	Ring finger domain
zf-C3HC4_2	PF13923	140 - 180	3.8e-10	Zinc finger, C3HC4 type (RING finger)
zf-C3HC4	PF00097	140 - 180	3.3e-08	Zinc finger, C3HC4 type (RING finger)
zf-RING_UBOX	PF13445	140 - 171	6.2e-07	RING-type zinc-finger
zf-RING_11	PF17123	140 - 167	8.5e-07	RING-like zinc finger
zf-RING_5	PF14634	140 - 182	8.8e-07	zinc-RING finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003342)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G00335 AT4G00335 AT4G00335
fragaria_vesca	FvH4_7g14770 FvH4_7g14770 FvH4_7g14770 FvH4_7g14770 FvH4_7g14770 FvH4_7g14770 FvH4_7g14770
malus_domestica	MD01G1066500.v1.1 MD07G1134100.v1.1
prunus_persica	Prupe.2G173400_v2.0.a1 Prupe.2G173400_v2.0.a1 Prupe.2G173400_v2.0.a1 Prupe.2G173400_v2.0.a1 Prupe.2G173400_v2.0.a1 Prupe.2G173400_v2.0.a1 Prupe.2G173400_v2.0.a1 Prupe.2G173400_v2.0.a1 Prupe.2G173400_v2.0.a1 Prupe.2G173400_v2.0.a1 Prupe.2G173400_v2.0.a1 Prupe.2G173400_v2.0.a1 Prupe.2G173400_v2.0.a1
pyrus_communis	pycom07g13170
rosa_chinensis	RchiOBHm_Chr1g0356711
rosa_laevigata	RLG00000028085
rosa_multiflora	Rmu_sc0005718.1_g000002
rosa_roxburghii	Rroxscaffold_4G00299380
rosa_rugosa	Rorug01G0251000
rosa_samantha	Rh1AG264900 Rh1BG232400 Rh1CG248600 Rh1DG260100
rosa_wichuraiana	Rw1G023440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	6
AclWI	GGATC	1 cut(s)	159
AcuI	CTGAAG	2 cut(s)	270, 488
AflII	CTTAAG	1 cut(s)	94
AgsI	TTSAA	2 cut(s)	329, 372
AjnI	CCWGG	2 cut(s)	138, 251
AloI	GAACNNNNNNTCC	2 cut(s)	126, 158
AluBI	AGCT	2 cut(s)	32, 267
AluI	AGCT	2 cut(s)	32, 267
Alw21I	GWGCWC	1 cut(s)	49
Alw26I	GTCTC	1 cut(s)	434
AlwI	GGATC	1 cut(s)	159
AlwNI	CAGNNNCTG	1 cut(s)	242
ApeKI	GCWGC	1 cut(s)	267
Asp700I	GAANNNNTTC	1 cut(s)	523
AsuHPI	GGTGA	3 cut(s)	342, 479, 549
BarI	GAAGNNNNNNTAC	2 cut(s)	150, 182
BauI	CACGAG	1 cut(s)	493
BbsI	GAAGAC	1 cut(s)	411
Bbv12I	GWGCWC	1 cut(s)	49
BbvI	GCAGC	1 cut(s)	254
BccI	CCATC	1 cut(s)	505
BciT130I	CCWGG	2 cut(s)	140, 253
BciVI	GTATCC	1 cut(s)	509
BclI	TGATCA	1 cut(s)	541
BcoDI	GTCTC	1 cut(s)	434
BfmI	CTRYAG	1 cut(s)	268
BfrI	CTTAAG	1 cut(s)	94
BfuI	GTATCC	1 cut(s)	509
BglII	AGATCT	2 cut(s)	98, 301
BisI	GCNGC	1 cut(s)	268
BlsI	GCNGC	1 cut(s)	269
Bme1390I	CCNGG	2 cut(s)	140, 253
BmrFI	CCNGG	2 cut(s)	140, 253
BmsI	GCATC	1 cut(s)	170
BpiI	GAAGAC	1 cut(s)	411
BsaJI	CCNNGG	1 cut(s)	252
BsaWI	WCCGGW	1 cut(s)	70
BsaXI	ACNNNNNCTCC	2 cut(s)	36, 66
BseBI	CCWGG	2 cut(s)	140, 253
BseDI	CCNNGG	1 cut(s)	252
BseGI	GGATG	2 cut(s)	227, 516
BseRI	GAGGAG	1 cut(s)	180
BseXI	GCAGC	1 cut(s)	254
BsgI	GTGCAG	1 cut(s)	150
BsiHKAI	GWGCWC	1 cut(s)	49
BsiSI	CCGG	1 cut(s)	71
BslFI	GGGAC	1 cut(s)	405
BsmAI	GTCTC	1 cut(s)	434
BsmFI	GGGAC	1 cut(s)	405
Bsp1286I	GDGCHC	1 cut(s)	49
Bsp143I	GATC	5 cut(s)	98, 151, 230, 301, 541
BspACI	CCGC	1 cut(s)	6
BspMAI	CTGCAG	1 cut(s)	272
BspPI	GGATC	1 cut(s)	159
BspQI	GCTCTTC	1 cut(s)	75
BspTI	CTTAAG	1 cut(s)	94
BssECI	CCNNGG	1 cut(s)	252
BssMI	GATC	5 cut(s)	98, 151, 230, 301, 541
BssSI	CACGAG	1 cut(s)	493
Bst2BI	CACGAG	1 cut(s)	493
Bst2UI	CCWGG	2 cut(s)	140, 253
Bst6I	CTCTTC	3 cut(s)	75, 429, 573
BstAFI	CTTAAG	1 cut(s)	94
BstF5I	GGATG	2 cut(s)	227, 516
BstKTI	GATC	5 cut(s)	101, 154, 233, 304, 544
BstMAI	GTCTC	1 cut(s)	434
BstMBI	GATC	5 cut(s)	98, 151, 230, 301, 541
BstMWI	GCNNNNNNNGC	2 cut(s)	12, 21
BstNI	CCWGG	2 cut(s)	140, 253
BstSCI	CCNGG	2 cut(s)	138, 251
BstSFI	CTRYAG	1 cut(s)	268
BstV1I	GCAGC	1 cut(s)	254
BstV2I	GAAGAC	1 cut(s)	411
BstX2I	RGATCY	3 cut(s)	98, 151, 301
BstYI	RGATCY	3 cut(s)	98, 151, 301
BsuI	GTATCC	1 cut(s)	509
BtsCI	GGATG	2 cut(s)	227, 516
BtsIMutI	CAGTG	2 cut(s)	133, 512
CaiI	CAGNNNCTG	1 cut(s)	242
CviAII	CATG	2 cut(s)	41, 389
CviJI	RGCY	3 cut(s)	32, 116, 267
CviKI_1	RGCY	3 cut(s)	32, 116, 267
DpnI	GATC	5 cut(s)	100, 153, 232, 303, 543
DpnII	GATC	5 cut(s)	98, 151, 230, 301, 541
Eam1104I	CTCTTC	3 cut(s)	75, 429, 573
EarI	CTCTTC	3 cut(s)	75, 429, 573
Eco32I	GATATC	1 cut(s)	346
Eco57I	CTGAAG	2 cut(s)	270, 488
EcoRII	CCWGG	2 cut(s)	138, 251
EcoRV	GATATC	1 cut(s)	346
FaeI	CATG	2 cut(s)	44, 392
FaqI	GGGAC	1 cut(s)	405
FatI	CATG	2 cut(s)	40, 388
FauNDI	CATATG	1 cut(s)	205
FbaI	TGATCA	1 cut(s)	541
Fnu4HI	GCNGC	1 cut(s)	268
FokI	GGATG	2 cut(s)	234, 523
Fsp4HI	GCNGC	1 cut(s)	268
GluI	GCNGC	1 cut(s)	268
HapII	CCGG	1 cut(s)	71
Hin1II	CATG	2 cut(s)	44, 392
HinfI	GANTC	7 cut(s)	89, 135, 239, 245, 311, 451, 524
HpaII	CCGG	1 cut(s)	71
HphI	GGTGA	3 cut(s)	342, 479, 549
Hpy166II	GTNNAC	1 cut(s)	227
Hpy188I	TCNGA	2 cut(s)	244, 316
Hpy188III	TCNNGA	6 cut(s)	104, 155, 228, 329, 431, 545
Hpy8I	GTNNAC	1 cut(s)	227
HpyAV	CCTTC	2 cut(s)	512, 562
HpyCH4V	TGCA	5 cut(s)	24, 40, 131, 270, 321
HpyF10VI	GCNNNNNNNGC	2 cut(s)	12, 21
Hsp92II	CATG	2 cut(s)	44, 392
Ksp22I	TGATCA	1 cut(s)	541
Kzo9I	GATC	5 cut(s)	98, 151, 230, 301, 541
LguI	GCTCTTC	1 cut(s)	75
LmnI	GCTCC	1 cut(s)	44
Lsp1109I	GCAGC	1 cut(s)	254
LweI	GCATC	1 cut(s)	170
MaeIII	GTNAC	1 cut(s)	109
MalI	GATC	5 cut(s)	100, 153, 232, 303, 543
MboI	GATC	5 cut(s)	98, 151, 230, 301, 541
MboII	GAAGA	6 cut(s)	92, 367, 416, 422, 446, 577
MflI	RGATCY	3 cut(s)	98, 151, 301
MhlI	GDGCHC	1 cut(s)	49
MluCI	AATT	1 cut(s)	261
MlyI	GAGTC	2 cut(s)	98, 129
MnlI	CCTC	6 cut(s)	78, 127, 198, 201, 396, 500
MroXI	GAANNNNTTC	1 cut(s)	523
MseI	TTAA	1 cut(s)	95
MslI	CAYNNNNRTG	1 cut(s)	39
MspCI	CTTAAG	1 cut(s)	94
MspI	CCGG	1 cut(s)	71
MspR9I	CCNGG	2 cut(s)	140, 253
MvaI	CCWGG	2 cut(s)	140, 253
MwoI	GCNNNNNNNGC	2 cut(s)	12, 21
NdeI	CATATG	1 cut(s)	205
NdeII	GATC	5 cut(s)	98, 151, 230, 301, 541
NlaIII	CATG	2 cut(s)	44, 392
NmuCI	GTSAC	1 cut(s)	109
PciSI	GCTCTTC	1 cut(s)	75
PdmI	GAANNNNTTC	1 cut(s)	523
PfeI	GAWTC	5 cut(s)	239, 245, 311, 451, 524
PkrI	GCNGC	1 cut(s)	269
PleI	GAGTC	2 cut(s)	97, 129
PpsI	GAGTC	2 cut(s)	97, 129
Psp6I	CCWGG	2 cut(s)	138, 251
PspGI	CCWGG	2 cut(s)	138, 251
PstI	CTGCAG	1 cut(s)	272
PstNI	CAGNNNCTG	1 cut(s)	242
PsuI	RGATCY	3 cut(s)	98, 151, 301
RseI	CAYNNNNRTG	1 cut(s)	39
SapI	GCTCTTC	1 cut(s)	75
SaqAI	TTAA	1 cut(s)	95
SatI	GCNGC	1 cut(s)	268
Sau3AI	GATC	5 cut(s)	98, 151, 230, 301, 541
SchI	GAGTC	2 cut(s)	98, 129
ScrFI	CCNGG	2 cut(s)	140, 253
SduI	GDGCHC	1 cut(s)	49
SetI	ASST	7 cut(s)	34, 52, 199, 269, 388, 492, 573
SfaNI	GCATC	1 cut(s)	170
SfcI	CTRYAG	1 cut(s)	268
SmiMI	CAYNNNNRTG	1 cut(s)	39
SmlI	CTYRAG	1 cut(s)	94
SmoI	CTYRAG	1 cut(s)	94
Sse9I	AATT	1 cut(s)	261
SsiI	CCGC	1 cut(s)	6
StyD4I	CCNGG	2 cut(s)	138, 251
TaqI	TCGA	1 cut(s)	432
TasI	AATT	1 cut(s)	261
TfiI	GAWTC	5 cut(s)	239, 245, 311, 451, 524
Tru1I	TTAA	1 cut(s)	95
Tru9I	TTAA	1 cut(s)	95
TscAI	CASTG	2 cut(s)	133, 512
TseFI	GTSAC	1 cut(s)	109
TseI	GCWGC	1 cut(s)	267
Tsp45I	GTSAC	1 cut(s)	109
TspDTI	ATGAA	3 cut(s)	134, 396, 456
TspRI	CASTG	2 cut(s)	133, 512
Vha464I	CTTAAG	1 cut(s)	94
XmnI	GAANNNNTTC	1 cut(s)	523

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.