Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0003342

Physical Location & Seq

Genomic Coordinates Forward (+)

14747195 .. 14748859

Gene Structure 1665 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g13170.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 648 bp

ATGGGAGGTTGTTGCTGTTCTTGCAGAAAAGCTCATCTGCATGGGGCACCTGTATATATCTATTGTCCTCCGGTTTTGGAAGAGCAAGAGTCCTTAAGATCTCCAGCTGTAGATAATGTCACAGCCTCCGCAATCAGTGCAGGACTCCTGGTTCATTGGGATCTGGAAACATCAATACCAGACACTTACAGACCCCCTCCTCCACCTTTGCCATATGATATGGTCTTTGGATGTTCACGATCAACAGATTCTGATTCTGCCAGGGAAACAATAAGTTGCAGTAGCTTTGATACTTCAGCAACTTGTGGAGATCTTGGGGAATCAGACTGCAAAGTTCAAGAAAGTTCTTTGGATATCTCACCGAAGAAGTTAGAACTTTCAAAATCAAATGAACCTCATGTTTTAGAAAAAGAAGACGAAGATGTTTGTCCCATTTGTCTCGAAGAGTTTGAAACAGAGAATCCAAAGTTTATCACAAAATGCAAACACCACTATCACCTCTCGTGTATCCTTGAGTGGATGGAAAGAAGTGATTCCTGTCCTATATGTGATCAGACAGGTCTCTGGATTTTAAATGGAGCAATCAAGAGGTTAAGAACAAGGCCTTCCTATGGAACCAAGGTAACGACGGTTCCGCTTTCCACGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2 zf-rbx1

Protein Analysis

216

Amino Acids

23.77

Weight (kDa)

4.98

Isoelectric Point (pI)

61.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003342)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G00335 AT4G00335 AT4G00335
fragaria_vesca	FvH4_7g14770 FvH4_7g14770 FvH4_7g14770 FvH4_7g14770 FvH4_7g14770 FvH4_7g14770 FvH4_7g14770
malus_domestica	MD01G1066500.v1.1 MD07G1134100.v1.1
prunus_persica	Prupe.2G173400_v2.0.a1 Prupe.2G173400_v2.0.a1 Prupe.2G173400_v2.0.a1 Prupe.2G173400_v2.0.a1 Prupe.2G173400_v2.0.a1 Prupe.2G173400_v2.0.a1 Prupe.2G173400_v2.0.a1 Prupe.2G173400_v2.0.a1 Prupe.2G173400_v2.0.a1 Prupe.2G173400_v2.0.a1 Prupe.2G173400_v2.0.a1 Prupe.2G173400_v2.0.a1 Prupe.2G173400_v2.0.a1
pyrus_communis	pycom07g13170
rosa_chinensis	RchiOBHm_Chr1g0356711
rosa_laevigata	RLG00000028085
rosa_multiflora	Rmu_sc0005718.1_g000002
rosa_roxburghii	Rroxscaffold_4G00299380
rosa_rugosa	Rorug01G0251000
rosa_samantha	Rh1AG264900 Rh1BG232400 Rh1CG248600 Rh1DG260100
rosa_wichuraiana	Rw1G023440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	46
AciI	CCGC	2 cut(s)	129, 635
AclWI	GGATC	1 cut(s)	168
AcuI	CTGAAG	1 cut(s)	279
AfiI	CCNNNNNNNGG	1 cut(s)	611
AflII	CTTAAG	1 cut(s)	94
AgsI	TTSAA	3 cut(s)	338, 381, 452
AjnI	CCWGG	2 cut(s)	147, 260
AloI	GAACNNNNNNTCC	2 cut(s)	135, 167
AluBI	AGCT	3 cut(s)	32, 107, 285
AluI	AGCT	3 cut(s)	32, 107, 285
Alw26I	GTCTC	2 cut(s)	443, 566
AlwI	GGATC	1 cut(s)	168
AlwNI	CAGNNNCTG	1 cut(s)	251
AoxI	GGCC	1 cut(s)	602
Asp700I	GAANNNNTTC	1 cut(s)	532
AsuHPI	GGTGA	2 cut(s)	351, 488
BaeGI	GKGCMC	1 cut(s)	49
BanI	GGYRCC	1 cut(s)	46
BauI	CACGAG	1 cut(s)	502
BbsI	GAAGAC	1 cut(s)	420
BccI	CCATC	1 cut(s)	514
BciT130I	CCWGG	2 cut(s)	149, 262
BciVI	GTATCC	1 cut(s)	518
BclI	TGATCA	1 cut(s)	550
BcoDI	GTCTC	2 cut(s)	443, 566
BfmI	CTRYAG	1 cut(s)	108
BfrI	CTTAAG	1 cut(s)	94
BfuI	GTATCC	1 cut(s)	518
BglII	AGATCT	2 cut(s)	98, 310
Bme1390I	CCNGG	2 cut(s)	149, 262
BmiI	GGNNCC	3 cut(s)	48, 616, 633
BmrFI	CCNGG	2 cut(s)	149, 262
BpiI	GAAGAC	1 cut(s)	420
BpmI	CTGGAG	1 cut(s)	87
BpuEI	CTTGAG	1 cut(s)	533
BsaAI	YACGTR	1 cut(s)	645
BsaI	GGTCTC	1 cut(s)	566
BsaJI	CCNNGG	2 cut(s)	261, 618
BsaWI	WCCGGW	1 cut(s)	70
Bsc4I	CCNNNNNNNGG	1 cut(s)	611
BseBI	CCWGG	2 cut(s)	149, 262
BseDI	CCNNGG	2 cut(s)	261, 618
BseGI	GGATG	2 cut(s)	236, 525
BseLI	CCNNNNNNNGG	1 cut(s)	611
BseRI	GAGGAG	1 cut(s)	189
BseSI	GKGCMC	1 cut(s)	49
BsgI	GTGCAG	1 cut(s)	159
BshFI	GGCC	1 cut(s)	604
BshNI	GGYRCC	1 cut(s)	46
BsiSI	CCGG	1 cut(s)	71
BslFI	GGGAC	1 cut(s)	414
BslI	CCNNNNNNNGG	1 cut(s)	611
BsmAI	GTCTC	2 cut(s)	443, 566
BsmFI	GGGAC	1 cut(s)	414
BsnI	GGCC	1 cut(s)	604
Bso31I	GGTCTC	1 cut(s)	566
Bsp1286I	GDGCHC	1 cut(s)	49
Bsp143I	GATC	5 cut(s)	98, 160, 239, 310, 550
BspACI	CCGC	2 cut(s)	129, 635
BspANI	GGCC	1 cut(s)	604
BspLI	GGNNCC	3 cut(s)	48, 616, 633
BspPI	GGATC	1 cut(s)	168
BspQI	GCTCTTC	1 cut(s)	75
BspT107I	GGYRCC	1 cut(s)	46
BspTI	CTTAAG	1 cut(s)	94
BspTNI	GGTCTC	1 cut(s)	566
BssECI	CCNNGG	2 cut(s)	261, 618
BssMI	GATC	5 cut(s)	98, 160, 239, 310, 550
BssSI	CACGAG	1 cut(s)	502
BssT1I	CCWWGG	1 cut(s)	618
Bst2BI	CACGAG	1 cut(s)	502
Bst2UI	CCWGG	2 cut(s)	149, 262
Bst4CI	ACNGT	1 cut(s)	631
Bst6I	CTCTTC	2 cut(s)	75, 438
BstAFI	CTTAAG	1 cut(s)	94
BstAPI	GCANNNNNTGC	1 cut(s)	137
BstBAI	YACGTR	1 cut(s)	645
BstF5I	GGATG	2 cut(s)	236, 525
BstKTI	GATC	5 cut(s)	101, 163, 242, 313, 553
BstMAI	GTCTC	2 cut(s)	443, 566
BstMBI	GATC	5 cut(s)	98, 160, 239, 310, 550
BstMWI	GCNNNNNNNGC	2 cut(s)	21, 137
BstNI	CCWGG	2 cut(s)	149, 262
BstSCI	CCNGG	2 cut(s)	147, 260
BstSFI	CTRYAG	1 cut(s)	108
BstSLI	GKGCMC	1 cut(s)	49
BstV2I	GAAGAC	1 cut(s)	420
BstX2I	RGATCY	3 cut(s)	98, 160, 310
BstYI	RGATCY	3 cut(s)	98, 160, 310
BsuI	GTATCC	1 cut(s)	518
BsuRI	GGCC	1 cut(s)	604
BtsCI	GGATG	2 cut(s)	236, 525
BtsIMutI	CAGTG	1 cut(s)	142
CaiI	CAGNNNCTG	1 cut(s)	251
CviAII	CATG	2 cut(s)	41, 398
CviJI	RGCY	5 cut(s)	32, 107, 125, 285, 604
CviKI_1	RGCY	5 cut(s)	32, 107, 125, 285, 604
DpnI	GATC	5 cut(s)	100, 162, 241, 312, 552
DpnII	GATC	5 cut(s)	98, 160, 239, 310, 550
DraI	TTTAAA	1 cut(s)	573
Eam1104I	CTCTTC	2 cut(s)	75, 438
EarI	CTCTTC	2 cut(s)	75, 438
Eco130I	CCWWGG	1 cut(s)	618
Eco147I	AGGCCT	1 cut(s)	604
Eco31I	GGTCTC	1 cut(s)	566
Eco32I	GATATC	1 cut(s)	355
Eco57I	CTGAAG	1 cut(s)	279
EcoRII	CCWGG	2 cut(s)	147, 260
EcoRV	GATATC	1 cut(s)	355
EcoT14I	CCWWGG	1 cut(s)	618
ErhI	CCWWGG	1 cut(s)	618
FaeI	CATG	2 cut(s)	44, 401
FaqI	GGGAC	1 cut(s)	414
FatI	CATG	2 cut(s)	40, 397
FauNDI	CATATG	1 cut(s)	214
FbaI	TGATCA	1 cut(s)	550
FokI	GGATG	2 cut(s)	243, 532
GsuI	CTGGAG	1 cut(s)	87
HaeIII	GGCC	1 cut(s)	604
HapII	CCGG	1 cut(s)	71
Hin1II	CATG	2 cut(s)	44, 401
HinfI	GANTC	7 cut(s)	89, 144, 248, 254, 320, 460, 533
HpaII	CCGG	1 cut(s)	71
HphI	GGTGA	2 cut(s)	351, 488
Hpy166II	GTNNAC	1 cut(s)	236
Hpy188I	TCNGA	3 cut(s)	253, 325, 555
Hpy188III	TCNNGA	6 cut(s)	164, 237, 338, 440, 565, 586
Hpy8I	GTNNAC	1 cut(s)	236
Hpy99I	CGWCG	1 cut(s)	631
HpyAV	CCTTC	1 cut(s)	615
HpyCH4III	ACNGT	1 cut(s)	631
HpyCH4IV	ACGT	1 cut(s)	644
HpyCH4V	TGCA	6 cut(s)	24, 40, 140, 279, 330, 483
HpyF10VI	GCNNNNNNNGC	2 cut(s)	21, 137
HpySE526I	ACGT	1 cut(s)	644
Hsp92II	CATG	2 cut(s)	44, 401
Ksp22I	TGATCA	1 cut(s)	550
Kzo9I	GATC	5 cut(s)	98, 160, 239, 310, 550
LguI	GCTCTTC	1 cut(s)	75
LmnI	GCTCC	1 cut(s)	578
MaeII	ACGT	1 cut(s)	644
MaeIII	GTNAC	2 cut(s)	118, 622
MalI	GATC	5 cut(s)	100, 162, 241, 312, 552
MboI	GATC	5 cut(s)	98, 160, 239, 310, 550
MboII	GAAGA	5 cut(s)	92, 376, 425, 431, 455
MflI	RGATCY	3 cut(s)	98, 160, 310
MhlI	GDGCHC	1 cut(s)	49
MlyI	GAGTC	2 cut(s)	98, 138
MnlI	CCTC	7 cut(s)	78, 136, 207, 210, 405, 509, 582
MroXI	GAANNNNTTC	1 cut(s)	532
MseI	TTAA	3 cut(s)	95, 572, 593
MslI	CAYNNNNRTG	1 cut(s)	39
MspA1I	CMGCKG	1 cut(s)	107
MspCI	CTTAAG	1 cut(s)	94
MspI	CCGG	1 cut(s)	71
MspR9I	CCNGG	2 cut(s)	149, 262
MvaI	CCWGG	2 cut(s)	149, 262
MwoI	GCNNNNNNNGC	2 cut(s)	21, 137
NdeI	CATATG	1 cut(s)	214
NdeII	GATC	5 cut(s)	98, 160, 239, 310, 550
NlaIII	CATG	2 cut(s)	44, 401
NlaIV	GGNNCC	3 cut(s)	48, 616, 633
NmuCI	GTSAC	1 cut(s)	118
PceI	AGGCCT	1 cut(s)	604
PciSI	GCTCTTC	1 cut(s)	75
PdmI	GAANNNNTTC	1 cut(s)	532
PfeI	GAWTC	5 cut(s)	248, 254, 320, 460, 533
PleI	GAGTC	2 cut(s)	97, 138
PpsI	GAGTC	2 cut(s)	97, 138
Ppu21I	YACGTR	1 cut(s)	645
Psp6I	CCWGG	2 cut(s)	147, 260
PspGI	CCWGG	2 cut(s)	147, 260
PspN4I	GGNNCC	3 cut(s)	48, 616, 633
PsrI	GAACNNNNNNTAC	2 cut(s)	615, 647
PstNI	CAGNNNCTG	1 cut(s)	251
PsuI	RGATCY	3 cut(s)	98, 160, 310
PvuII	CAGCTG	1 cut(s)	107
RseI	CAYNNNNRTG	1 cut(s)	39
SapI	GCTCTTC	1 cut(s)	75
SaqAI	TTAA	3 cut(s)	95, 572, 593
Sau3AI	GATC	5 cut(s)	98, 160, 239, 310, 550
SchI	GAGTC	2 cut(s)	98, 138
ScrFI	CCNGG	2 cut(s)	149, 262
SduI	GDGCHC	1 cut(s)	49
SfcI	CTRYAG	1 cut(s)	108
SmiMI	CAYNNNNRTG	1 cut(s)	39
SmlI	CTYRAG	2 cut(s)	94, 512
SmoI	CTYRAG	2 cut(s)	94, 512
SseBI	AGGCCT	1 cut(s)	604
SsiI	CCGC	2 cut(s)	129, 635
StuI	AGGCCT	1 cut(s)	604
StyD4I	CCNGG	2 cut(s)	147, 260
StyI	CCWWGG	1 cut(s)	618
TaaI	ACNGT	1 cut(s)	631
TaiI	ACGT	1 cut(s)	647
TaqI	TCGA	1 cut(s)	441
TfiI	GAWTC	5 cut(s)	248, 254, 320, 460, 533
Tru1I	TTAA	3 cut(s)	95, 572, 593
Tru9I	TTAA	3 cut(s)	95, 572, 593
TscAI	CASTG	1 cut(s)	142
TseFI	GTSAC	1 cut(s)	118
Tsp45I	GTSAC	1 cut(s)	118
TspDTI	ATGAA	2 cut(s)	143, 405
TspRI	CASTG	1 cut(s)	142
Vha464I	CTTAAG	1 cut(s)	94
XmnI	GAANNNNTTC	1 cut(s)	532

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.