Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0015360

Physical Location & Seq

Genomic Coordinates Forward (+)

13414523 .. 13416160

Gene Structure 1638 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g15500.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 669 bp

ATGCAGCAGCTGGAAGCACCCAACTACTTTCTCTCTCAAAACCACCTCCAATGGCTAAAACCCCTCCCACCCTCCACCACCTCCTCCTCCAATGTCCCCCCTCCCTCCTCCCCCTCCTCAAATTACCTCACTACCCTCGGCCTCGGCTACGCCATAGCCATCGCCCTCGGCTTCCTCGTCCTCCTCTCCACCCTCCTCCTCGCCTCCTACATCTGCTGCCGCGTCTCCCGCCGCTCCCAAACCCAAACCCGAACCCGAACCCAAAACCCCAACTCCTCCTCAGAAGGTGTCATCCTCCCCCGCATCATCTTCGTCGCCGAAGACGACGACCTCGAGAACCCACAAAACGACGATGACAACAACTCCGCCGCCGGGCTCCACCACAACGTCATCAACTCCTACCCGAAGTTCCCGTTTTCCAAGGAGCTCGGGGGCGGCGACGCGTCCACGTGTTCCATCTGCCTCTGCGACTATCGGGAATTCGAGATGCTGAGGATGATGCCCGAGTGCCGGCATCACTTTCACCTCTTGTGCCTCGACGCCTGGCTCAAGCTCAACGGCTCCTGCCCCGTCTGCCGGAACTCGCCGCTCCCGACGCCGCTGTCGACGCCGCTGCAGGAGGTCGTGCCGCTGAGCCAGCACGCCGCCGATCGGAGATGGAGGAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Methyltransf_29 zf-RING_2

Protein Analysis

223

Amino Acids

24.78

Weight (kDa)

6.64

Isoelectric Point (pI)

66.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	150 - 193	4.8e-12	Ring finger domain
zf-RING_11	PF17123	151 - 179	1.5e-06	RING-like zinc finger
zf-rbx1	PF12678	163 - 193	4.8e-06	RING-H2 zinc finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015360)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46160 AT2G46160
fragaria_vesca	FvH4_7g15500
malus_domestica	MD01G1072300.v1.1
prunus_persica	Prupe.2G178600_v2.0.a1
pyrus_communis	pycom01g10150 pycom07g12760
rosa_chinensis	RchiOBHm_Chr1g0357831
rosa_laevigata	RLG00000027993
rosa_multiflora	Rmu_sc0002071.1_g000001 Rmu_sc0011109.1_g000007
rosa_samantha	Rh1AG272800 Rh1BG240100 Rh1CG256700 Rh1DG268400
rosa_wichuraiana	Rw1G024350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	601
AccBSI	CCGCTC	2 cut(s)	234, 589
AccI	GTMKAC	1 cut(s)	605
AccII	CGCG	2 cut(s)	222, 443
AcsI	RAATTY	1 cut(s)	479
AcvI	CACGTG	1 cut(s)	450
AcyI	GRCGYC	3 cut(s)	540, 596, 608
AfiI	CCNNNNNNNGG	4 cut(s)	372, 510, 576, 651
AflIII	ACRYGT	2 cut(s)	441, 449
AjnI	CCWGG	1 cut(s)	542
AluBI	AGCT	3 cut(s)	10, 427, 553
AluI	AGCT	3 cut(s)	10, 427, 553
Alw21I	GWGCWC	1 cut(s)	429
Alw26I	GTCTC	1 cut(s)	229
AlwNI	CAGNNNCTG	1 cut(s)	10
Ama87I	CYCGRG	3 cut(s)	332, 428, 503
AoxI	GGCC	1 cut(s)	139
ApeKI	GCWGC	4 cut(s)	4, 7, 216, 613
ApoI	RAATTY	1 cut(s)	479
AsuC2I	CCSGG	1 cut(s)	373
AsuHPI	GGTGA	1 cut(s)	515
AvaI	CYCGRG	3 cut(s)	332, 428, 503
BanII	GRGCYC	2 cut(s)	378, 429
BbrPI	CACGTG	1 cut(s)	450
BbsI	GAAGAC	1 cut(s)	327
Bbv12I	GWGCWC	1 cut(s)	429
BbvCI	CCTCAGC	1 cut(s)	491
BbvI	GCAGC	4 cut(s)	16, 19, 203, 600
BccI	CCATC	3 cut(s)	167, 464, 651
BceAI	ACGGC	1 cut(s)	574
BcgI	CGANNNNNNTGC	4 cut(s)	292, 326, 595, 629
BciT130I	CCWGG	1 cut(s)	544
BcnI	CCSGG	1 cut(s)	373
BcoDI	GTCTC	1 cut(s)	229
BfmI	CTRYAG	1 cut(s)	614
BlpI	GCTNAGC	1 cut(s)	632
Bme1390I	CCNGG	2 cut(s)	373, 544
BmeT110I	CYCGRG	3 cut(s)	332, 428, 503
BmiI	GGNNCC	2 cut(s)	377, 562
BmrFI	CCNGG	2 cut(s)	373, 544
BmsI	GCATC	4 cut(s)	312, 477, 489, 523
BpiI	GAAGAC	1 cut(s)	327
Bpu10I	CCTNAGC	1 cut(s)	491
Bpu1102I	GCTNAGC	1 cut(s)	632
BpuEI	CTTGAG	1 cut(s)	533
BpuMI	CCSGG	1 cut(s)	373
BsaAI	YACGTR	1 cut(s)	450
BsaHI	GRCGYC	3 cut(s)	540, 596, 608
BsaJI	CCNNGG	4 cut(s)	136, 142, 166, 420
BsaXI	ACNNNNNCTCC	4 cut(s)	257, 287, 347, 377
Bsc4I	CCNNNNNNNGG	4 cut(s)	372, 510, 576, 651
Bse118I	RCCGGY	1 cut(s)	510
BseBI	CCWGG	1 cut(s)	544
BseDI	CCNNGG	4 cut(s)	136, 142, 166, 420
BseGI	GGATG	2 cut(s)	291, 501
BseLI	CCNNNNNNNGG	4 cut(s)	372, 510, 576, 651
BseMII	CTCAG	3 cut(s)	294, 482, 623
BseRI	GAGGAG	9 cut(s)	73, 76, 97, 106, 173, 185, 188, 265, 268
BseXI	GCAGC	4 cut(s)	16, 19, 203, 600
Bsh1236I	CGCG	2 cut(s)	222, 443
Bsh1285I	CGRYCG	1 cut(s)	652
BshFI	GGCC	1 cut(s)	141
BsiEI	CGRYCG	1 cut(s)	652
BsiHKAI	GWGCWC	1 cut(s)	429
BsiHKCI	CYCGRG	3 cut(s)	332, 428, 503
BsiSI	CCGG	3 cut(s)	372, 511, 577
BslFI	GGGAC	1 cut(s)	80
BslI	CCNNNNNNNGG	4 cut(s)	372, 510, 576, 651
BsmAI	GTCTC	1 cut(s)	229
BsmBI	CGTCTC	1 cut(s)	229
BsmFI	GGGAC	1 cut(s)	80
BsnI	GGCC	1 cut(s)	141
BsoBI	CYCGRG	3 cut(s)	332, 428, 503
Bsp1286I	GDGCHC	2 cut(s)	378, 429
Bsp143I	GATC	1 cut(s)	649
Bsp1720I	GCTNAGC	1 cut(s)	632
BspANI	GGCC	1 cut(s)	141
BspCNI	CTCAG	3 cut(s)	293, 483, 624
BspFNI	CGCG	2 cut(s)	222, 443
BspLI	GGNNCC	2 cut(s)	377, 562
BspMAI	CTGCAG	1 cut(s)	618
BsrBI	CCGCTC	2 cut(s)	234, 589
BsrFI	RCCGGY	1 cut(s)	510
BssAI	RCCGGY	1 cut(s)	510
BssECI	CCNNGG	4 cut(s)	136, 142, 166, 420
BssMI	GATC	1 cut(s)	649
BssNI	GRCGYC	3 cut(s)	540, 596, 608
BssT1I	CCWWGG	1 cut(s)	420
Bst2UI	CCWGG	1 cut(s)	544
BstACI	GRCGYC	3 cut(s)	540, 596, 608
BstBAI	YACGTR	1 cut(s)	450
BstC8I	GCNNGC	3 cut(s)	512, 638, 642
BstDEI	CTNAG	3 cut(s)	280, 491, 632
BstF5I	GGATG	2 cut(s)	291, 501
BstFNI	CGCG	2 cut(s)	222, 443
BstKTI	GATC	1 cut(s)	652
BstMAI	GTCTC	1 cut(s)	229
BstMBI	GATC	1 cut(s)	649
BstMCI	CGRYCG	1 cut(s)	652
BstMWI	GCNNNNNNNGC	5 cut(s)	228, 573, 595, 607, 637
BstNI	CCWGG	1 cut(s)	544
BstSCI	CCNGG	2 cut(s)	371, 542
BstSFI	CTRYAG	1 cut(s)	614
BstUI	CGCG	2 cut(s)	222, 443
BstV1I	GCAGC	4 cut(s)	16, 19, 203, 600
BstV2I	GAAGAC	1 cut(s)	327
BsuRI	GGCC	1 cut(s)	141
BtgZI	GCGATG	1 cut(s)	145
BtsCI	GGATG	2 cut(s)	291, 501
Cac8I	GCNNGC	3 cut(s)	512, 638, 642
CaiI	CAGNNNCTG	1 cut(s)	10
Cfr10I	RCCGGY	1 cut(s)	510
CseI	GACGC	6 cut(s)	211, 432, 449, 548, 604, 616
DdeI	CTNAG	3 cut(s)	280, 491, 632
DpnI	GATC	1 cut(s)	651
DpnII	GATC	1 cut(s)	649
DrdI	GACNNNNNNGTC	1 cut(s)	601
DseDI	GACNNNNNNGTC	1 cut(s)	601
EciI	GGCGGA	1 cut(s)	355
Ecl136II	GAGCTC	1 cut(s)	427
Eco130I	CCWWGG	1 cut(s)	420
Eco24I	GRGCYC	2 cut(s)	378, 429
Eco53kI	GAGCTC	1 cut(s)	427
Eco72I	CACGTG	1 cut(s)	450
Eco88I	CYCGRG	3 cut(s)	332, 428, 503
EcoICRI	GAGCTC	1 cut(s)	427
EcoRI	GAATTC	1 cut(s)	479
EcoRII	CCWGG	1 cut(s)	542
EcoT14I	CCWWGG	1 cut(s)	420
EcoT38I	GRGCYC	2 cut(s)	378, 429
ErhI	CCWWGG	1 cut(s)	420
Esp3I	CGTCTC	1 cut(s)	229
FaiI	YATR	1 cut(s)	155
FaqI	GGGAC	1 cut(s)	80
FauI	CCCGC	2 cut(s)	236, 308
FblI	GTMKAC	1 cut(s)	605
FokI	GGATG	2 cut(s)	278, 508
FriOI	GRGCYC	2 cut(s)	378, 429
HaeIII	GGCC	1 cut(s)	141
HapII	CCGG	3 cut(s)	372, 511, 577
HgaI	GACGC	6 cut(s)	211, 432, 449, 548, 604, 616
Hin1I	GRCGYC	3 cut(s)	540, 596, 608
HincII	GTYRAC	1 cut(s)	606
HindII	GTYRAC	1 cut(s)	606
HpaII	CCGG	3 cut(s)	372, 511, 577
HphI	GGTGA	1 cut(s)	515
Hpy166II	GTNNAC	2 cut(s)	447, 606
Hpy188I	TCNGA	2 cut(s)	283, 654
Hpy188III	TCNNGA	4 cut(s)	334, 476, 484, 592
Hpy8I	GTNNAC	2 cut(s)	447, 606
Hpy99I	CGWCG	7 cut(s)	317, 329, 353, 443, 542, 598, 610
HpyAV	CCTTC	1 cut(s)	278
HpyCH4IV	ACGT	2 cut(s)	387, 449
HpyCH4V	TGCA	2 cut(s)	4, 616
HpyF10VI	GCNNNNNNNGC	5 cut(s)	228, 573, 595, 607, 637
HpyF3I	CTNAG	3 cut(s)	280, 491, 632
HpySE526I	ACGT	2 cut(s)	387, 449
Hsp92I	GRCGYC	3 cut(s)	540, 596, 608
KroI	GCCGGC	1 cut(s)	510
KroNI	GCCGGC	1 cut(s)	512
Kzo9I	GATC	1 cut(s)	649
LmnI	GCTCC	5 cut(s)	239, 381, 424, 566, 594
LpnPI	CCDG	8 cut(s)	385, 524, 529, 556, 577, 590, 602, 650
Lsp1109I	GCAGC	4 cut(s)	16, 19, 203, 600
LweI	GCATC	4 cut(s)	312, 477, 489, 523
MaeII	ACGT	2 cut(s)	387, 449
MalI	GATC	1 cut(s)	651
MbiI	CCGCTC	2 cut(s)	234, 589
MboI	GATC	1 cut(s)	649
MboII	GAAGA	2 cut(s)	301, 332
MhlI	GDGCHC	2 cut(s)	378, 429
MluCI	AATT	2 cut(s)	121, 479
MluI	ACGCGT	1 cut(s)	441
MroNI	GCCGGC	1 cut(s)	510
MspA1I	CMGCKG	4 cut(s)	10, 601, 613, 631
MspI	CCGG	3 cut(s)	372, 511, 577
MspR9I	CCNGG	2 cut(s)	373, 544
MvaI	CCWGG	1 cut(s)	544
MvnI	CGCG	2 cut(s)	222, 443
MwoI	GCNNNNNNNGC	5 cut(s)	228, 573, 595, 607, 637
NaeI	GCCGGC	1 cut(s)	512
NciI	CCSGG	1 cut(s)	373
NdeII	GATC	1 cut(s)	649
NgoMIV	GCCGGC	1 cut(s)	510
NlaIV	GGNNCC	2 cut(s)	377, 562
NmeAIII	GCCGAG	3 cut(s)	117, 123, 147
PaeR7I	CTCGAG	1 cut(s)	332
PcsI	WCGNNNNNNNCGW	6 cut(s)	174, 321, 330, 435, 590, 602
PdiI	GCCGGC	1 cut(s)	512
Ple19I	CGATCG	1 cut(s)	652
PmaCI	CACGTG	1 cut(s)	450
PmlI	CACGTG	1 cut(s)	450
Ppu21I	YACGTR	1 cut(s)	450
Psp124BI	GAGCTC	1 cut(s)	429
Psp6I	CCWGG	1 cut(s)	542
PspCI	CACGTG	1 cut(s)	450
PspGI	CCWGG	1 cut(s)	542
PspN4I	GGNNCC	2 cut(s)	377, 562
PstI	CTGCAG	1 cut(s)	618
PstNI	CAGNNNCTG	1 cut(s)	10
PvuI	CGATCG	1 cut(s)	652
PvuII	CAGCTG	1 cut(s)	10
SacI	GAGCTC	1 cut(s)	429
SalI	GTCGAC	1 cut(s)	604
Sau3AI	GATC	1 cut(s)	649
ScrFI	CCNGG	2 cut(s)	373, 544
SduI	GDGCHC	2 cut(s)	378, 429
SfaNI	GCATC	4 cut(s)	312, 477, 489, 523
SfcI	CTRYAG	1 cut(s)	614
Sfr274I	CTCGAG	1 cut(s)	332
SlaI	CTCGAG	1 cut(s)	332
SmlI	CTYRAG	2 cut(s)	332, 548
SmoI	CTYRAG	2 cut(s)	332, 548
Sse9I	AATT	2 cut(s)	121, 479
SstI	GAGCTC	1 cut(s)	429
StyD4I	CCNGG	2 cut(s)	371, 542
StyI	CCWWGG	1 cut(s)	420
TaiI	ACGT	2 cut(s)	390, 452
TaqI	TCGA	4 cut(s)	333, 483, 537, 605
TasI	AATT	2 cut(s)	121, 479
TauI	GCSGC	9 cut(s)	222, 234, 371, 438, 589, 601, 613, 631, 647
TseI	GCWGC	4 cut(s)	4, 7, 216, 613
XapI	RAATTY	1 cut(s)	479
XhoI	CTCGAG	1 cut(s)	332
XmiI	GTMKAC	1 cut(s)	605

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.