Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0015360

Physical Location & Seq

Genomic Coordinates Reverse (-)

14065192 .. 14065767

Gene Structure 576 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g12760.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 576 bp

ATGTTCTCCTCCAACTCCACCTCCCACTCGCCCGCTAATTACCTAACTACCCTCGGCCTCGGTTACGGCATCGCCATTTCCCTCGGCTTCCTCGTCCTCTTCTCCACCCTCCTCCTCGCCTCCTACCTCTGCTGCCGCGTCTCCCGCCACCGCCCTCCTCAGCCCCGAAACCCCAATCCGAATCCGTACCCCGAGGGCGTCATCCTCCCCCGCATCATTTTCGTCGCCGAAGACGACAACGAGCAGGAGCAGCAGGACGACGATGAGAACGCCGTCGTCGGGCTACACCCGAGCGCCATCAACTCCTACCCGAAATTCCCGTTCTCCAAGGAGGCGGCTACCCCCGATTCGTCCACGTGCTCCATCTGCCTGTGCGACTACAAGGACGCAGAGATGCTCCGGATGATGCCGGAGTGCAGGCACTACTTCCACCAGTTGTGCCTCGACGCGTGGCTCCGGCTCAACGGGTCGTGCCCGGTTTGCCGGAACTCGCCGCTTCCAACGCCTCTGTCGACCCCGTTGCAGGAGGTCGTGCCTTTGTCTCAGTACCCGGCCGATCGGGGATGGCGGGGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

192

Amino Acids

21.29

Weight (kDa)

5.46

Isoelectric Point (pI)

58.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	119 - 162	5.8e-13	Ring finger domain
zf-RING_11	PF17123	120 - 148	7.5e-08	RING-like zinc finger
zf-C3HC4_2	PF13923	120 - 161	3.1e-07	Zinc finger, C3HC4 type (RING finger)
zf-C3HC4	PF00097	120 - 161	4.7e-06	Zinc finger, C3HC4 type (RING finger)
zf-rbx1	PF12678	125 - 162	4.8e-07	RING-H2 zinc finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015360)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46160 AT2G46160
fragaria_vesca	FvH4_7g15500
malus_domestica	MD01G1072300.v1.1
prunus_persica	Prupe.2G178600_v2.0.a1
pyrus_communis	pycom01g10150 pycom07g12760
rosa_chinensis	RchiOBHm_Chr1g0357831
rosa_laevigata	RLG00000027993
rosa_multiflora	Rmu_sc0002071.1_g000001 Rmu_sc0011109.1_g000007
rosa_samantha	Rh1AG272800 Rh1BG240100 Rh1CG256700 Rh1DG268400
rosa_wichuraiana	Rw1G024350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	512
AccII	CGCG	2 cut(s)	138, 449
AccIII	TCCGGA	1 cut(s)	399
AciI	CCGC	8 cut(s)	33, 136, 145, 151, 211, 335, 494, 568
AcoI	YGGCCR	1 cut(s)	552
AcsI	RAATTY	1 cut(s)	314
AcvI	CACGTG	1 cut(s)	357
AcyI	GRCGYC	1 cut(s)	198
AfaI	GTAC	2 cut(s)	188, 548
AfiI	CCNNNNNNNGG	2 cut(s)	279, 523
AflIII	ACRYGT	1 cut(s)	447
Alw21I	GWGCWC	1 cut(s)	362
Alw26I	GTCTC	2 cut(s)	145, 546
Ama87I	CYCGRG	2 cut(s)	191, 289
Aor13HI	TCCGGA	1 cut(s)	399
AoxI	GGCC	2 cut(s)	55, 552
ApeKI	GCWGC	2 cut(s)	132, 250
ApoI	RAATTY	1 cut(s)	314
AspLEI	GCGC	1 cut(s)	296
AsuC2I	CCSGG	2 cut(s)	476, 551
AvaI	CYCGRG	2 cut(s)	191, 289
BaeGI	GKGCMC	1 cut(s)	476
BbrPI	CACGTG	1 cut(s)	357
BbsI	GAAGAC	1 cut(s)	237
Bbv12I	GWGCWC	1 cut(s)	362
BbvCI	CCTCAGC	1 cut(s)	159
BbvI	GCAGC	2 cut(s)	119, 262
BccI	CCATC	3 cut(s)	305, 371, 558
BceAI	ACGGC	2 cut(s)	82, 257
BcgI	CGANNNNNNTGC	4 cut(s)	202, 236, 502, 536
BcnI	CCSGG	2 cut(s)	476, 551
BcoDI	GTCTC	2 cut(s)	145, 546
BfoI	RGCGCY	1 cut(s)	297
BisI	GCNGC	5 cut(s)	133, 136, 251, 336, 494
BlsI	GCNGC	5 cut(s)	134, 137, 252, 337, 495
Bme1390I	CCNGG	2 cut(s)	476, 551
BmeT110I	CYCGRG	2 cut(s)	191, 289
BmiI	GGNNCC	1 cut(s)	455
BmrFI	CCNGG	2 cut(s)	476, 551
BmsI	GCATC	4 cut(s)	78, 222, 384, 396
BpiI	GAAGAC	1 cut(s)	237
Bpu10I	CCTNAGC	1 cut(s)	159
BpuMI	CCSGG	2 cut(s)	476, 551
BsaAI	YACGTR	1 cut(s)	357
BsaHI	GRCGYC	1 cut(s)	198
BsaJI	CCNNGG	5 cut(s)	52, 58, 82, 192, 327
BsaWI	WCCGGW	1 cut(s)	399
BsaXI	ACNNNNNCTCC	2 cut(s)	5, 35
Bsc4I	CCNNNNNNNGG	2 cut(s)	279, 523
Bse1I	ACTGG	1 cut(s)	433
BseAI	TCCGGA	1 cut(s)	399
BseDI	CCNNGG	5 cut(s)	52, 58, 82, 192, 327
BseGI	GGATG	3 cut(s)	201, 408, 569
BseLI	CCNNNNNNNGG	2 cut(s)	279, 523
BseMII	CTCAG	2 cut(s)	173, 557
BseNI	ACTGG	1 cut(s)	433
BseRI	GAGGAG	3 cut(s)	101, 104, 147
BseSI	GKGCMC	1 cut(s)	476
BseX3I	CGGCCG	1 cut(s)	552
BseXI	GCAGC	2 cut(s)	119, 262
BsgI	GTGCAG	1 cut(s)	436
Bsh1236I	CGCG	2 cut(s)	138, 449
Bsh1285I	CGRYCG	2 cut(s)	555, 559
BshFI	GGCC	2 cut(s)	57, 554
BsiEI	CGRYCG	2 cut(s)	555, 559
BsiHKAI	GWGCWC	1 cut(s)	362
BsiHKCI	CYCGRG	2 cut(s)	191, 289
BsiSI	CCGG	6 cut(s)	400, 410, 457, 476, 484, 551
BslI	CCNNNNNNNGG	2 cut(s)	279, 523
BsmAI	GTCTC	2 cut(s)	145, 546
BsmBI	CGTCTC	1 cut(s)	145
BsnI	GGCC	2 cut(s)	57, 554
BsoBI	CYCGRG	2 cut(s)	191, 289
Bsp1286I	GDGCHC	2 cut(s)	362, 476
Bsp13I	TCCGGA	1 cut(s)	399
Bsp143I	GATC	1 cut(s)	556
BspACI	CCGC	8 cut(s)	33, 136, 145, 151, 211, 335, 494, 568
BspANI	GGCC	2 cut(s)	57, 554
BspCNI	CTCAG	2 cut(s)	172, 556
BspEI	TCCGGA	1 cut(s)	399
BspFNI	CGCG	2 cut(s)	138, 449
BspLI	GGNNCC	1 cut(s)	455
BsrI	ACTGG	1 cut(s)	433
BssECI	CCNNGG	5 cut(s)	52, 58, 82, 192, 327
BssMI	GATC	1 cut(s)	556
BssNI	GRCGYC	1 cut(s)	198
BssT1I	CCWWGG	1 cut(s)	327
Bst6I	CTCTTC	1 cut(s)	104
BstACI	GRCGYC	1 cut(s)	198
BstBAI	YACGTR	1 cut(s)	357
BstC8I	GCNNGC	2 cut(s)	33, 419
BstDEI	CTNAG	2 cut(s)	159, 543
BstF5I	GGATG	3 cut(s)	201, 408, 569
BstFNI	CGCG	2 cut(s)	138, 449
BstH2I	RGCGCY	1 cut(s)	297
BstHHI	GCGC	1 cut(s)	296
BstKTI	GATC	1 cut(s)	559
BstMAI	GTCTC	2 cut(s)	145, 546
BstMBI	GATC	1 cut(s)	556
BstMCI	CGRYCG	2 cut(s)	555, 559
BstMWI	GCNNNNNNNGC	5 cut(s)	144, 250, 366, 480, 502
BstSCI	CCNGG	2 cut(s)	474, 549
BstSLI	GKGCMC	1 cut(s)	476
BstUI	CGCG	2 cut(s)	138, 449
BstV1I	GCAGC	2 cut(s)	119, 262
BstV2I	GAAGAC	1 cut(s)	237
BstZI	CGGCCG	1 cut(s)	552
BsuRI	GGCC	2 cut(s)	57, 554
BtgZI	GCGATG	1 cut(s)	55
BtsCI	GGATG	3 cut(s)	201, 408, 569
Cac8I	GCNNGC	2 cut(s)	33, 419
CfoI	GCGC	1 cut(s)	296
CseI	GACGC	4 cut(s)	127, 187, 395, 455
Csp6I	GTAC	2 cut(s)	187, 547
CviJI	RGCY	8 cut(s)	57, 87, 163, 283, 338, 454, 460, 554
CviKI_1	RGCY	8 cut(s)	57, 87, 163, 283, 338, 454, 460, 554
CviQI	GTAC	2 cut(s)	187, 547
DdeI	CTNAG	2 cut(s)	159, 543
DpnI	GATC	1 cut(s)	558
DpnII	GATC	1 cut(s)	556
EaeI	YGGCCR	1 cut(s)	552
EagI	CGGCCG	1 cut(s)	552
Eam1104I	CTCTTC	1 cut(s)	104
EarI	CTCTTC	1 cut(s)	104
EclXI	CGGCCG	1 cut(s)	552
Eco130I	CCWWGG	1 cut(s)	327
Eco52I	CGGCCG	1 cut(s)	552
Eco72I	CACGTG	1 cut(s)	357
Eco88I	CYCGRG	2 cut(s)	191, 289
EcoT14I	CCWWGG	1 cut(s)	327
ErhI	CCWWGG	1 cut(s)	327
Esp3I	CGTCTC	1 cut(s)	145
FauI	CCCGC	4 cut(s)	40, 152, 218, 561
FblI	GTMKAC	1 cut(s)	512
Fnu4HI	GCNGC	5 cut(s)	133, 136, 251, 336, 494
FokI	GGATG	2 cut(s)	188, 415
Fsp4HI	GCNGC	5 cut(s)	133, 136, 251, 336, 494
GlaI	GCGC	1 cut(s)	295
GluI	GCNGC	5 cut(s)	133, 136, 251, 336, 494
HaeII	RGCGCY	1 cut(s)	297
HaeIII	GGCC	2 cut(s)	57, 554
HapII	CCGG	6 cut(s)	400, 410, 457, 476, 484, 551
HgaI	GACGC	4 cut(s)	127, 187, 395, 455
HhaI	GCGC	1 cut(s)	296
Hin1I	GRCGYC	1 cut(s)	198
Hin6I	GCGC	1 cut(s)	294
HinP1I	GCGC	1 cut(s)	294
HincII	GTYRAC	1 cut(s)	513
HindII	GTYRAC	1 cut(s)	513
HinfI	GANTC	2 cut(s)	181, 347
HpaII	CCGG	6 cut(s)	400, 410, 457, 476, 484, 551
Hpy166II	GTNNAC	2 cut(s)	354, 513
Hpy188I	TCNGA	1 cut(s)	180
Hpy188III	TCNNGA	1 cut(s)	400
Hpy8I	GTNNAC	2 cut(s)	354, 513
Hpy99I	CGWCG	5 cut(s)	227, 263, 278, 281, 449
HpyCH4IV	ACGT	1 cut(s)	356
HpyCH4V	TGCA	2 cut(s)	417, 523
HpyF10VI	GCNNNNNNNGC	5 cut(s)	144, 250, 366, 480, 502
HpyF3I	CTNAG	2 cut(s)	159, 543
HpySE526I	ACGT	1 cut(s)	356
Hsp92I	GRCGYC	1 cut(s)	198
HspAI	GCGC	1 cut(s)	294
Kpn2I	TCCGGA	1 cut(s)	399
Kzo9I	GATC	1 cut(s)	556
LmnI	GCTCC	4 cut(s)	247, 365, 402, 459
Lsp1109I	GCAGC	2 cut(s)	119, 262
LweI	GCATC	4 cut(s)	78, 222, 384, 396
MaeII	ACGT	1 cut(s)	356
MaeIII	GTNAC	1 cut(s)	62
MalI	GATC	1 cut(s)	558
MboI	GATC	1 cut(s)	556
MboII	GAAGA	2 cut(s)	91, 242
MhlI	GDGCHC	2 cut(s)	362, 476
MluCI	AATT	2 cut(s)	37, 314
MluI	ACGCGT	1 cut(s)	447
MmeI	TCCRAC	2 cut(s)	36, 524
MroI	TCCGGA	1 cut(s)	399
MspI	CCGG	6 cut(s)	400, 410, 457, 476, 484, 551
MspR9I	CCNGG	2 cut(s)	476, 551
MvnI	CGCG	2 cut(s)	138, 449
MwoI	GCNNNNNNNGC	5 cut(s)	144, 250, 366, 480, 502
NciI	CCSGG	2 cut(s)	476, 551
NdeII	GATC	1 cut(s)	556
NlaIV	GGNNCC	1 cut(s)	455
NmeAIII	GCCGAG	2 cut(s)	33, 63
PcsI	WCGNNNNNNNCGW	3 cut(s)	90, 231, 509
PfeI	GAWTC	2 cut(s)	181, 347
PkrI	GCNGC	5 cut(s)	134, 137, 252, 337, 495
Ple19I	CGATCG	1 cut(s)	559
PmaCI	CACGTG	1 cut(s)	357
PmlI	CACGTG	1 cut(s)	357
Ppu21I	YACGTR	1 cut(s)	357
PspCI	CACGTG	1 cut(s)	357
PspN4I	GGNNCC	1 cut(s)	455
PvuI	CGATCG	1 cut(s)	559
RsaI	GTAC	2 cut(s)	188, 548
RsaNI	GTAC	2 cut(s)	187, 547
SalI	GTCGAC	1 cut(s)	511
SatI	GCNGC	5 cut(s)	133, 136, 251, 336, 494
Sau3AI	GATC	1 cut(s)	556
ScrFI	CCNGG	2 cut(s)	476, 551
SduI	GDGCHC	2 cut(s)	362, 476
SetI	ASST	5 cut(s)	23, 45, 129, 359, 531
SfaNI	GCATC	4 cut(s)	78, 222, 384, 396
Sse9I	AATT	2 cut(s)	37, 314
SsiI	CCGC	8 cut(s)	33, 136, 145, 151, 211, 335, 494, 568
StyD4I	CCNGG	2 cut(s)	474, 549
StyI	CCWWGG	1 cut(s)	327
TaiI	ACGT	1 cut(s)	359
TaqI	TCGA	2 cut(s)	444, 512
TasI	AATT	2 cut(s)	37, 314
TauI	GCSGC	3 cut(s)	138, 338, 496
TfiI	GAWTC	2 cut(s)	181, 347
TseI	GCWGC	2 cut(s)	132, 250
TspGWI	ACGGA	1 cut(s)	174
XapI	RAATTY	1 cut(s)	314
XmiI	GTMKAC	1 cut(s)	512

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.