Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0015360

Physical Location & Seq

Genomic Coordinates Forward (+)

10987926 .. 10988528

Gene Structure 603 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g10150.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 603 bp

ATGTCGTCCACCCCCACCCCCTCCTCTAACTCCAACCCTCACTCCCCCACTAATTATCTAACTACCCTCGGCCTCGGCTACGGCATCGCCATTTCTCTCGGCTTCCTCGTCCTCTTCTCCACCCTTCTCCTCGCCTCCTACATCTGCTGCCGCGTCTCCCGCCACCGCCACCACCACCACCACCAGCCGCCTCAGCGCCAGAACCCGAATCCGAGCCCCGAAGGCGTCATCCTCCCCCGCATCATCTTCGTCGCCGAAGACGACATCGAGCAGCAGCAGCAGGATGATGATGAGAACGCCGTCGTTGGGCTCCACCCGAGCGTCATCAATTCCTACCCCAAGTTCCCGTTTTCCAAGGAGGCGTCGACCCCCGATTCGTCCACGTGCTCCATCTGCCTCTGCGACTACAAGGACGCCGAGATGCTCCGGATGATGCCGGAGTGCCGGCACTACTTCCACCTGTTGTGCCTCGACGCGTGGCTCCGGCTCAAAGGATCGTGCCCGGTTTGCCGTAACTCGCCGCTGCCGACGCCTCTGTCAACTCCGTTGCAGGAGGTTGTGCCTTTATCTCAGTACCCGGCCGATCGGAGATGGAGGAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

201

Amino Acids

22.56

Weight (kDa)

6.78

Isoelectric Point (pI)

73.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	128 - 171	3.1e-12	Ring finger domain
zf-RING_11	PF17123	129 - 157	1.3e-07	RING-like zinc finger
zf-C3HC4_2	PF13923	129 - 170	4e-06	Zinc finger, C3HC4 type (RING finger)
zf-rbx1	PF12678	134 - 171	2.9e-07	RING-H2 zinc finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015360)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46160 AT2G46160
fragaria_vesca	FvH4_7g15500
malus_domestica	MD01G1072300.v1.1
prunus_persica	Prupe.2G178600_v2.0.a1
pyrus_communis	pycom01g10150 pycom07g12760
rosa_chinensis	RchiOBHm_Chr1g0357831
rosa_laevigata	RLG00000027993
rosa_multiflora	Rmu_sc0002071.1_g000001 Rmu_sc0011109.1_g000007
rosa_samantha	Rh1AG272800 Rh1BG240100 Rh1CG256700 Rh1DG268400
rosa_wichuraiana	Rw1G024350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	535
AccI	GTMKAC	1 cut(s)	365
AccII	CGCG	2 cut(s)	153, 476
AccIII	TCCGGA	1 cut(s)	426
AciI	CCGC	6 cut(s)	151, 160, 166, 188, 238, 521
AclWI	GGATC	1 cut(s)	502
AcoI	YGGCCR	1 cut(s)	579
AcvI	CACGTG	1 cut(s)	384
AcyI	GRCGYC	4 cut(s)	225, 362, 414, 530
AfaI	GTAC	1 cut(s)	575
AfiI	CCNNNNNNNGG	1 cut(s)	306
AflIII	ACRYGT	1 cut(s)	474
Alw21I	GWGCWC	1 cut(s)	389
Alw26I	GTCTC	1 cut(s)	160
AlwI	GGATC	1 cut(s)	502
Ama87I	CYCGRG	1 cut(s)	316
Aor13HI	TCCGGA	1 cut(s)	426
AoxI	GGCC	2 cut(s)	70, 579
ApeKI	GCWGC	5 cut(s)	147, 271, 274, 277, 523
ArsI	GACNNNNNNTTYG	2 cut(s)	358, 390
AspLEI	GCGC	1 cut(s)	198
AsuC2I	CCSGG	2 cut(s)	503, 578
AvaI	CYCGRG	1 cut(s)	316
BaeGI	GKGCMC	1 cut(s)	503
BanII	GRGCYC	2 cut(s)	218, 312
BbrPI	CACGTG	1 cut(s)	384
BbsI	GAAGAC	1 cut(s)	264
Bbv12I	GWGCWC	1 cut(s)	389
BbvCI	CCTCAGC	1 cut(s)	192
BbvI	GCAGC	5 cut(s)	134, 283, 286, 289, 510
BccI	CCATC	2 cut(s)	398, 585
BceAI	ACGGC	3 cut(s)	97, 284, 495
BcgI	CGANNNNNNTGC	2 cut(s)	229, 263
BcnI	CCSGG	2 cut(s)	503, 578
BcoDI	GTCTC	1 cut(s)	160
BfoI	RGCGCY	1 cut(s)	199
BglI	GCCNNNNNGGC	1 cut(s)	222
BisI	GCNGC	8 cut(s)	148, 151, 188, 272, 275, 278, 521, 524
BlsI	GCNGC	8 cut(s)	149, 152, 189, 273, 276, 279, 522, 525
Bme1390I	CCNGG	2 cut(s)	503, 578
BmeT110I	CYCGRG	1 cut(s)	316
BmiI	GGNNCC	2 cut(s)	311, 482
BmrFI	CCNGG	2 cut(s)	503, 578
BmsI	GCATC	4 cut(s)	93, 249, 411, 423
BpiI	GAAGAC	1 cut(s)	264
Bpu10I	CCTNAGC	1 cut(s)	192
BpuMI	CCSGG	2 cut(s)	503, 578
BsaAI	YACGTR	1 cut(s)	384
BsaHI	GRCGYC	4 cut(s)	225, 362, 414, 530
BsaJI	CCNNGG	3 cut(s)	67, 73, 354
BsaWI	WCCGGW	1 cut(s)	426
BsaXI	ACNNNNNCTCC	2 cut(s)	26, 56
Bsc4I	CCNNNNNNNGG	1 cut(s)	306
Bse118I	RCCGGY	1 cut(s)	444
BseAI	TCCGGA	1 cut(s)	426
BseDI	CCNNGG	3 cut(s)	67, 73, 354
BseGI	GGATG	3 cut(s)	228, 289, 435
BseLI	CCNNNNNNNGG	1 cut(s)	306
BseMII	CTCAG	2 cut(s)	206, 584
BseRI	GAGGAG	2 cut(s)	13, 119
BseSI	GKGCMC	1 cut(s)	503
BseX3I	CGGCCG	1 cut(s)	579
BseXI	GCAGC	5 cut(s)	134, 283, 286, 289, 510
Bsh1236I	CGCG	2 cut(s)	153, 476
Bsh1285I	CGRYCG	2 cut(s)	582, 586
BshFI	GGCC	2 cut(s)	72, 581
BsiEI	CGRYCG	2 cut(s)	582, 586
BsiHKAI	GWGCWC	1 cut(s)	389
BsiHKCI	CYCGRG	1 cut(s)	316
BsiSI	CCGG	6 cut(s)	427, 437, 445, 484, 503, 578
BslI	CCNNNNNNNGG	1 cut(s)	306
BsmAI	GTCTC	1 cut(s)	160
BsmBI	CGTCTC	1 cut(s)	160
BsnI	GGCC	2 cut(s)	72, 581
BsoBI	CYCGRG	1 cut(s)	316
Bsp1286I	GDGCHC	4 cut(s)	218, 312, 389, 503
Bsp13I	TCCGGA	1 cut(s)	426
Bsp143I	GATC	2 cut(s)	494, 583
BspACI	CCGC	6 cut(s)	151, 160, 166, 188, 238, 521
BspANI	GGCC	2 cut(s)	72, 581
BspCNI	CTCAG	2 cut(s)	205, 583
BspEI	TCCGGA	1 cut(s)	426
BspFNI	CGCG	2 cut(s)	153, 476
BspLI	GGNNCC	2 cut(s)	311, 482
BspPI	GGATC	1 cut(s)	502
BsrFI	RCCGGY	1 cut(s)	444
BssAI	RCCGGY	1 cut(s)	444
BssECI	CCNNGG	3 cut(s)	67, 73, 354
BssMI	GATC	2 cut(s)	494, 583
BssNI	GRCGYC	4 cut(s)	225, 362, 414, 530
BssT1I	CCWWGG	1 cut(s)	354
Bst6I	CTCTTC	1 cut(s)	119
BstACI	GRCGYC	4 cut(s)	225, 362, 414, 530
BstBAI	YACGTR	1 cut(s)	384
BstC8I	GCNNGC	1 cut(s)	446
BstDEI	CTNAG	2 cut(s)	192, 570
BstF5I	GGATG	3 cut(s)	228, 289, 435
BstFNI	CGCG	2 cut(s)	153, 476
BstH2I	RGCGCY	1 cut(s)	199
BstHHI	GCGC	1 cut(s)	198
BstKTI	GATC	2 cut(s)	497, 586
BstMAI	GTCTC	1 cut(s)	160
BstMBI	GATC	2 cut(s)	494, 583
BstMCI	CGRYCG	2 cut(s)	582, 586
BstMWI	GCNNNNNNNGC	7 cut(s)	159, 193, 222, 277, 393, 507, 529
BstSCI	CCNGG	2 cut(s)	501, 576
BstSLI	GKGCMC	1 cut(s)	503
BstUI	CGCG	2 cut(s)	153, 476
BstV1I	GCAGC	5 cut(s)	134, 283, 286, 289, 510
BstV2I	GAAGAC	1 cut(s)	264
BstZI	CGGCCG	1 cut(s)	579
BsuRI	GGCC	2 cut(s)	72, 581
BtgZI	GCGATG	1 cut(s)	70
BtsCI	GGATG	3 cut(s)	228, 289, 435
Cac8I	GCNNGC	1 cut(s)	446
CfoI	GCGC	1 cut(s)	198
Cfr10I	RCCGGY	1 cut(s)	444
CseI	GACGC	7 cut(s)	142, 214, 310, 351, 422, 482, 538
Csp6I	GTAC	1 cut(s)	574
CviJI	RGCY	9 cut(s)	72, 78, 102, 187, 216, 310, 481, 487, 581
CviKI_1	RGCY	9 cut(s)	72, 78, 102, 187, 216, 310, 481, 487, 581
CviQI	GTAC	1 cut(s)	574
DdeI	CTNAG	2 cut(s)	192, 570
DpnI	GATC	2 cut(s)	496, 585
DpnII	GATC	2 cut(s)	494, 583
DrdI	GACNNNNNNGTC	1 cut(s)	535
DseDI	GACNNNNNNGTC	1 cut(s)	535
EaeI	YGGCCR	1 cut(s)	579
EagI	CGGCCG	1 cut(s)	579
Eam1104I	CTCTTC	1 cut(s)	119
EarI	CTCTTC	1 cut(s)	119
EclXI	CGGCCG	1 cut(s)	579
Eco130I	CCWWGG	1 cut(s)	354
Eco24I	GRGCYC	2 cut(s)	218, 312
Eco52I	CGGCCG	1 cut(s)	579
Eco72I	CACGTG	1 cut(s)	384
Eco88I	CYCGRG	1 cut(s)	316
EcoT14I	CCWWGG	1 cut(s)	354
EcoT38I	GRGCYC	2 cut(s)	218, 312
ErhI	CCWWGG	1 cut(s)	354
Esp3I	CGTCTC	1 cut(s)	160
FauI	CCCGC	2 cut(s)	167, 245
FblI	GTMKAC	1 cut(s)	365
Fnu4HI	GCNGC	8 cut(s)	148, 151, 188, 272, 275, 278, 521, 524
FokI	GGATG	3 cut(s)	215, 296, 442
FriOI	GRGCYC	2 cut(s)	218, 312
Fsp4HI	GCNGC	8 cut(s)	148, 151, 188, 272, 275, 278, 521, 524
GlaI	GCGC	1 cut(s)	197
GluI	GCNGC	8 cut(s)	148, 151, 188, 272, 275, 278, 521, 524
HaeII	RGCGCY	1 cut(s)	199
HaeIII	GGCC	2 cut(s)	72, 581
HapII	CCGG	6 cut(s)	427, 437, 445, 484, 503, 578
HgaI	GACGC	7 cut(s)	142, 214, 310, 351, 422, 482, 538
HhaI	GCGC	1 cut(s)	198
Hin1I	GRCGYC	4 cut(s)	225, 362, 414, 530
Hin6I	GCGC	1 cut(s)	196
HinP1I	GCGC	1 cut(s)	196
HincII	GTYRAC	2 cut(s)	366, 540
HindII	GTYRAC	2 cut(s)	366, 540
HinfI	GANTC	2 cut(s)	208, 374
HpaII	CCGG	6 cut(s)	427, 437, 445, 484, 503, 578
Hpy166II	GTNNAC	4 cut(s)	9, 366, 381, 540
Hpy188I	TCNGA	2 cut(s)	213, 588
Hpy188III	TCNNGA	1 cut(s)	427
Hpy8I	GTNNAC	4 cut(s)	9, 366, 381, 540
Hpy99I	CGWCG	5 cut(s)	254, 305, 367, 476, 532
HpyAV	CCTTC	2 cut(s)	134, 215
HpyCH4IV	ACGT	1 cut(s)	383
HpyCH4V	TGCA	1 cut(s)	550
HpyF10VI	GCNNNNNNNGC	7 cut(s)	159, 193, 222, 277, 393, 507, 529
HpyF3I	CTNAG	2 cut(s)	192, 570
HpySE526I	ACGT	1 cut(s)	383
Hsp92I	GRCGYC	4 cut(s)	225, 362, 414, 530
HspAI	GCGC	1 cut(s)	196
Kpn2I	TCCGGA	1 cut(s)	426
KroI	GCCGGC	1 cut(s)	444
KroNI	GCCGGC	1 cut(s)	446
Kzo9I	GATC	2 cut(s)	494, 583
LmnI	GCTCC	4 cut(s)	315, 392, 429, 486
Lsp1109I	GCAGC	5 cut(s)	134, 283, 286, 289, 510
LweI	GCATC	4 cut(s)	93, 249, 411, 423
MaeII	ACGT	1 cut(s)	383
MaeIII	GTNAC	1 cut(s)	512
MalI	GATC	2 cut(s)	496, 585
MboI	GATC	2 cut(s)	494, 583
MboII	GAAGA	3 cut(s)	106, 238, 269
MhlI	GDGCHC	4 cut(s)	218, 312, 389, 503
MluCI	AATT	2 cut(s)	52, 328
MluI	ACGCGT	1 cut(s)	474
MmeI	TCCRAC	1 cut(s)	57
MroI	TCCGGA	1 cut(s)	426
MroNI	GCCGGC	1 cut(s)	444
MspA1I	CMGCKG	1 cut(s)	523
MspI	CCGG	6 cut(s)	427, 437, 445, 484, 503, 578
MspR9I	CCNGG	2 cut(s)	503, 578
MvnI	CGCG	2 cut(s)	153, 476
MwoI	GCNNNNNNNGC	7 cut(s)	159, 193, 222, 277, 393, 507, 529
NaeI	GCCGGC	1 cut(s)	446
NciI	CCSGG	2 cut(s)	503, 578
NdeII	GATC	2 cut(s)	494, 583
NgoMIV	GCCGGC	1 cut(s)	444
NlaIV	GGNNCC	2 cut(s)	311, 482
NmeAIII	GCCGAG	4 cut(s)	48, 54, 78, 442
PcsI	WCGNNNNNNNCGW	3 cut(s)	105, 258, 524
PdiI	GCCGGC	1 cut(s)	446
PfeI	GAWTC	2 cut(s)	208, 374
PkrI	GCNGC	8 cut(s)	149, 152, 189, 273, 276, 279, 522, 525
Ple19I	CGATCG	1 cut(s)	586
PmaCI	CACGTG	1 cut(s)	384
PmlI	CACGTG	1 cut(s)	384
Ppu21I	YACGTR	1 cut(s)	384
PspCI	CACGTG	1 cut(s)	384
PspN4I	GGNNCC	2 cut(s)	311, 482
PvuI	CGATCG	1 cut(s)	586
RsaI	GTAC	1 cut(s)	575
RsaNI	GTAC	1 cut(s)	574
SalI	GTCGAC	1 cut(s)	364
SatI	GCNGC	8 cut(s)	148, 151, 188, 272, 275, 278, 521, 524
Sau3AI	GATC	2 cut(s)	494, 583
ScrFI	CCNGG	2 cut(s)	503, 578
SduI	GDGCHC	4 cut(s)	218, 312, 389, 503
SetI	ASST	4 cut(s)	386, 462, 558, 602
SfaNI	GCATC	4 cut(s)	93, 249, 411, 423
Sse9I	AATT	2 cut(s)	52, 328
SsiI	CCGC	6 cut(s)	151, 160, 166, 188, 238, 521
StyD4I	CCNGG	2 cut(s)	501, 576
StyI	CCWWGG	1 cut(s)	354
TaiI	ACGT	1 cut(s)	386
TaqI	TCGA	3 cut(s)	267, 365, 471
TasI	AATT	2 cut(s)	52, 328
TauI	GCSGC	3 cut(s)	153, 190, 523
TfiI	GAWTC	2 cut(s)	208, 374
TseI	GCWGC	5 cut(s)	147, 271, 274, 277, 523
TspGWI	ACGGA	1 cut(s)	534
XmiI	GTMKAC	1 cut(s)	365

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.