Rw1G024350

Putative S-adenosyl-L-methionine-dependent methyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0015360
Physical Location & Seq
Forward (+)
50557067 .. 50558621
1555 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G024350.1

Sequence Viewer

Length: 573 bp
ATGTCCCCCCCTCCCTCCTCCCCCTCCTCAAATTACCTCACTACCCTCGGCCTCGGCTACGCCATAGCCATCGCCCTTGGCTTTCTCGTCCTTCTCTCCACCCTCCTCCTCGCCTCCTACATCTGCTGCCGCGTCTCCCGCCACCATCGCTCCCAGCCCCAAACCCAAACCCAAAACCCCAACTCCTCCTCCGAGGGCGTCATCCTCCCCCGCATCATCTTCGTCGCCGAGGACGACGTCGAGAACCAAGAAAACGACGACGAGAACTCCGTCGTCGGCCTCCACCAGAACGTCATCAACTCCTACCCCAAGTTCCCCTTCTCCAAGGAAATCGGCGGCGGCGATGCCTCCACGTGCTCCATCTGCCTCTGCGACTACCACGAATTCGAGATGCTGAGGATGATGCCCGAGTGCCGCCACCACTTCCACCTATTGTGTCTCGACGCGTGGCTCAAGCTCAACGGCTCCTGCCCCGTCTGCCGGAACTCGCCGCTGCCGACTCCGCTGTCGACGCCGCTGCAGGAGGTGGTGCCGCTGAGCCAGCACGCCGCCGATCGGAGATGGAGGAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Methyltransf_29 zf-RING_2

Protein Analysis

190

Amino Acids

21.18

Weight (kDa)

6.03

Isoelectric Point (pI)

71.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-RING_2 PF13639 118 - 161 5e-12 Ring finger domain
zf-rbx1 PF12678 131 - 161 8.2e-06 RING-H2 zinc finger domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015360)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G46160 AT2G46160
fragaria_vesca FvH4_7g15500
malus_domestica MD01G1072300.v1.1
prunus_persica Prupe.2G178600_v2.0.a1
pyrus_communis pycom01g10150 pycom07g12760
rosa_chinensis RchiOBHm_Chr1g0357831
rosa_laevigata RLG00000027993
rosa_multiflora Rmu_sc0002071.1_g000001 Rmu_sc0011109.1_g000007
rosa_samantha Rh1AG272800 Rh1BG240100 Rh1CG256700 Rh1DG268400
rosa_wichuraiana Rw1G024350

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 505
AatII GACGTC 1 cut(s) 240
AccB1I GGYRCC 1 cut(s) 529
AccI GTMKAC 1 cut(s) 509
AccII CGCG 2 cut(s) 132, 446
AcsI RAATTY 1 cut(s) 383
AcvI CACGTG 1 cut(s) 354
AcyI GRCGYC 3 cut(s) 198, 237, 512
AfiI CCNNNNNNNGG 2 cut(s) 480, 555
AflIII ACRYGT 1 cut(s) 444
AjuI GAANNNNNNNTTGG 2 cut(s) 302, 334
AluBI AGCT 1 cut(s) 457
AluI AGCT 1 cut(s) 457
Alw21I GWGCWC 1 cut(s) 359
Alw26I GTCTC 2 cut(s) 139, 443
Ama87I CYCGRG 1 cut(s) 407
AoxI GGCC 2 cut(s) 49, 277
ApeKI GCWGC 3 cut(s) 126, 493, 517
ApoI RAATTY 1 cut(s) 383
AvaI CYCGRG 1 cut(s) 407
BanI GGYRCC 1 cut(s) 529
BbrPI CACGTG 1 cut(s) 354
Bbv12I GWGCWC 1 cut(s) 359
BbvCI CCTCAGC 1 cut(s) 395
BbvI GCAGC 3 cut(s) 113, 480, 504
BccI CCATC 4 cut(s) 77, 153, 368, 555
BceAI ACGGC 1 cut(s) 478
BcgI CGANNNNNNTGC 4 cut(s) 202, 236, 499, 533
BcoDI GTCTC 2 cut(s) 139, 443
BfmI CTRYAG 1 cut(s) 518
BlpI GCTNAGC 1 cut(s) 536
BmeT110I CYCGRG 1 cut(s) 407
BmiI GGNNCC 2 cut(s) 466, 531
BmsI GCATC 4 cut(s) 222, 334, 381, 393
Bpu10I CCTNAGC 1 cut(s) 395
Bpu1102I GCTNAGC 1 cut(s) 536
BpuEI CTTGAG 1 cut(s) 437
BsaAI YACGTR 1 cut(s) 354
BsaHI GRCGYC 3 cut(s) 198, 237, 512
BsaJI CCNNGG 6 cut(s) 46, 52, 76, 192, 228, 324
BsaXI ACNNNNNCTCC 8 cut(s) 134, 164, 167, 173, 197, 203, 251, 281
Bsc4I CCNNNNNNNGG 2 cut(s) 480, 555
BseDI CCNNGG 6 cut(s) 46, 52, 76, 192, 228, 324
BseGI GGATG 2 cut(s) 201, 405
BseLI CCNNNNNNNGG 2 cut(s) 480, 555
BseMII CTCAG 2 cut(s) 386, 527
BseRI GAGGAG 6 cut(s) 7, 16, 95, 98, 175, 178
BseXI GCAGC 3 cut(s) 113, 480, 504
BseYI CCCAGC 1 cut(s) 153
Bsh1236I CGCG 2 cut(s) 132, 446
Bsh1285I CGRYCG 1 cut(s) 556
BshFI GGCC 2 cut(s) 51, 279
BshNI GGYRCC 1 cut(s) 529
BsiEI CGRYCG 1 cut(s) 556
BsiHKAI GWGCWC 1 cut(s) 359
BsiHKCI CYCGRG 1 cut(s) 407
BsiSI CCGG 1 cut(s) 481
BslI CCNNNNNNNGG 2 cut(s) 480, 555
BsmAI GTCTC 2 cut(s) 139, 443
BsmBI CGTCTC 1 cut(s) 139
BsnI GGCC 2 cut(s) 51, 279
BsoBI CYCGRG 1 cut(s) 407
Bsp1286I GDGCHC 1 cut(s) 359
Bsp143I GATC 1 cut(s) 553
Bsp1720I GCTNAGC 1 cut(s) 536
BspANI GGCC 2 cut(s) 51, 279
BspCNI CTCAG 2 cut(s) 387, 528
BspFNI CGCG 2 cut(s) 132, 446
BspLI GGNNCC 2 cut(s) 466, 531
BspMAI CTGCAG 1 cut(s) 522
BspT107I GGYRCC 1 cut(s) 529
BssECI CCNNGG 6 cut(s) 46, 52, 76, 192, 228, 324
BssMI GATC 1 cut(s) 553
BssNI GRCGYC 3 cut(s) 198, 237, 512
BssT1I CCWWGG 2 cut(s) 76, 324
BstACI GRCGYC 3 cut(s) 198, 237, 512
BstBAI YACGTR 1 cut(s) 354
BstC8I GCNNGC 2 cut(s) 542, 546
BstDEI CTNAG 2 cut(s) 395, 536
BstF5I GGATG 2 cut(s) 201, 405
BstFNI CGCG 2 cut(s) 132, 446
BstKTI GATC 1 cut(s) 556
BstMAI GTCTC 2 cut(s) 139, 443
BstMBI GATC 1 cut(s) 553
BstMCI CGRYCG 1 cut(s) 556
BstMWI GCNNNNNNNGC 7 cut(s) 138, 147, 363, 477, 502, 511, 541
BstSFI CTRYAG 1 cut(s) 518
BstUI CGCG 2 cut(s) 132, 446
BstV1I GCAGC 3 cut(s) 113, 480, 504
BsuRI GGCC 2 cut(s) 51, 279
BtgZI GCGATG 3 cut(s) 55, 131, 357
BtsCI GGATG 2 cut(s) 201, 405
Cac8I GCNNGC 2 cut(s) 542, 546
CseI GACGC 4 cut(s) 121, 187, 452, 520
DdeI CTNAG 2 cut(s) 395, 536
DpnI GATC 1 cut(s) 555
DpnII GATC 1 cut(s) 553
DrdI GACNNNNNNGTC 1 cut(s) 505
DseDI GACNNNNNNGTC 1 cut(s) 505
Eco130I CCWWGG 2 cut(s) 76, 324
Eco72I CACGTG 1 cut(s) 354
Eco88I CYCGRG 1 cut(s) 407
EcoRI GAATTC 1 cut(s) 383
EcoT14I CCWWGG 2 cut(s) 76, 324
ErhI CCWWGG 2 cut(s) 76, 324
Esp3I CGTCTC 1 cut(s) 139
FaiI YATR 1 cut(s) 65
FalI AAGNNNNNCTT 2 cut(s) 302, 334
FauI CCCGC 2 cut(s) 146, 218
FblI GTMKAC 1 cut(s) 509
FokI GGATG 2 cut(s) 188, 412
GsaI CCCAGC 1 cut(s) 157
HaeIII GGCC 2 cut(s) 51, 279
HapII CCGG 1 cut(s) 481
HgaI GACGC 4 cut(s) 121, 187, 452, 520
Hin1I GRCGYC 3 cut(s) 198, 237, 512
HincII GTYRAC 1 cut(s) 510
HindII GTYRAC 1 cut(s) 510
HinfI GANTC 1 cut(s) 499
HpaII CCGG 1 cut(s) 481
Hpy166II GTNNAC 1 cut(s) 510
Hpy188I TCNGA 2 cut(s) 193, 558
Hpy188III TCNNGA 3 cut(s) 241, 388, 440
Hpy8I GTNNAC 1 cut(s) 510
Hpy99I CGWCG 9 cut(s) 227, 239, 242, 260, 263, 275, 278, 446, 514
HpyAV CCTTC 2 cut(s) 101, 328
HpyCH4IV ACGT 3 cut(s) 237, 291, 353
HpyCH4V TGCA 1 cut(s) 520
HpyF10VI GCNNNNNNNGC 7 cut(s) 138, 147, 363, 477, 502, 511, 541
HpyF3I CTNAG 2 cut(s) 395, 536
HpySE526I ACGT 3 cut(s) 237, 291, 353
Hsp92I GRCGYC 3 cut(s) 198, 237, 512
Kzo9I GATC 1 cut(s) 553
LmnI GCTCC 3 cut(s) 155, 362, 470
LpnPI CCDG 6 cut(s) 167, 299, 481, 494, 506, 554
Lsp1109I GCAGC 3 cut(s) 113, 480, 504
LweI GCATC 4 cut(s) 222, 334, 381, 393
MaeII ACGT 3 cut(s) 237, 291, 353
MalI GATC 1 cut(s) 555
MboI GATC 1 cut(s) 553
MboII GAAGA 1 cut(s) 211
MhlI GDGCHC 1 cut(s) 359
MluCI AATT 2 cut(s) 31, 383
MluI ACGCGT 1 cut(s) 444
MlyI GAGTC 1 cut(s) 493
MspA1I CMGCKG 4 cut(s) 493, 505, 517, 535
MspI CCGG 1 cut(s) 481
MvnI CGCG 2 cut(s) 132, 446
MwoI GCNNNNNNNGC 7 cut(s) 138, 147, 363, 477, 502, 511, 541
NdeII GATC 1 cut(s) 553
NlaIV GGNNCC 2 cut(s) 466, 531
NmeAIII GCCGAG 3 cut(s) 27, 33, 253
PcsI WCGNNNNNNNCGW 4 cut(s) 231, 267, 339, 494
PflFI GACNNNGTC 1 cut(s) 236
Ple19I CGATCG 1 cut(s) 556
PleI GAGTC 1 cut(s) 493
PmaCI CACGTG 1 cut(s) 354
PmlI CACGTG 1 cut(s) 354
PpsI GAGTC 1 cut(s) 493
Ppu21I YACGTR 1 cut(s) 354
PspCI CACGTG 1 cut(s) 354
PspFI CCCAGC 1 cut(s) 153
PspN4I GGNNCC 2 cut(s) 466, 531
PstI CTGCAG 1 cut(s) 522
PsyI GACNNNGTC 1 cut(s) 236
PvuI CGATCG 1 cut(s) 556
SalI GTCGAC 1 cut(s) 508
Sau3AI GATC 1 cut(s) 553
SchI GAGTC 1 cut(s) 493
SduI GDGCHC 1 cut(s) 359
SetI ASST 8 cut(s) 39, 240, 294, 356, 432, 459, 528, 572
SfaNI GCATC 4 cut(s) 222, 334, 381, 393
SfcI CTRYAG 1 cut(s) 518
SmlI CTYRAG 1 cut(s) 452
SmoI CTYRAG 1 cut(s) 452
Sse9I AATT 2 cut(s) 31, 383
StyI CCWWGG 2 cut(s) 76, 324
TaiI ACGT 3 cut(s) 240, 294, 356
TaqI TCGA 4 cut(s) 240, 387, 441, 509
TasI AATT 2 cut(s) 31, 383
TauI GCSGC 8 cut(s) 132, 339, 342, 417, 493, 517, 535, 551
TseI GCWGC 3 cut(s) 126, 493, 517
TspGWI ACGGA 1 cut(s) 259
Tth111I GACNNNGTC 1 cut(s) 236
XapI RAATTY 1 cut(s) 383
XmiI GTMKAC 1 cut(s) 509
ZraI GACGTC 1 cut(s) 238
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.