Rh1AG272800

Putative S-adenosyl-L-methionine-dependent methyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0015360
Physical Location & Seq
Forward (+)
50074823 .. 50075401
579 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG272800.1

Sequence Viewer

Length: 579 bp
ATGTCCCCCCCTCCCTCCTCCCCCTCCTCAAATTACCTCACTACCCTCGGCCTCGGCTACGCCATAGCCATCACCCTTGGCTTTCTCGTCCTTCTCTCCACCCTCCTCCTCGCCTCCTATATCTGCTGCCGCGTCTCCCGCCACCACCGCTCCCAGCCCCAAACCCAAACCCAAACCCAAAACCCCAACTCCTCCTCCGAGGGCATCATCCTCCCCCGCATCATCTTCGTCGCCGAGGACGACGTCGAGAACCAAGAAAACGACGATGAGAACTCCGTCGTCGGCCTCCACCAGAACGTCATCAACTCCTACCCCAAGTTCCCCTTCTCCAAGGAAATCGGCGGCGGCGATGCCTCCACGTGCTCCATCTGCCTCTGCGACTACCACGAATTCGAGATGCTGAGGATGATGCCCGAGTGCCGCCACCACTTCCACCTATTGTGTCTCGACGCGTGGCTCAAGCTCAACGGCTCCTGCCCCGTCTGTCGGAACTCGCCGCTGCCGACTCCGCTGTCGACGCCGCTGCAGGAGGTGGTGCCGCTGAGCCAGCACGCCGCCGATCGGAGATGGAGGAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Methyltransf_29 zf-RING_2

Protein Analysis

192

Amino Acids

21.45

Weight (kDa)

6.03

Isoelectric Point (pI)

69.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-RING_2 PF13639 120 - 163 5.1e-12 Ring finger domain
zf-rbx1 PF12678 133 - 163 8.3e-06 RING-H2 zinc finger domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015360)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G46160 AT2G46160
fragaria_vesca FvH4_7g15500
malus_domestica MD01G1072300.v1.1
prunus_persica Prupe.2G178600_v2.0.a1
pyrus_communis pycom01g10150 pycom07g12760
rosa_chinensis RchiOBHm_Chr1g0357831
rosa_laevigata RLG00000027993
rosa_multiflora Rmu_sc0002071.1_g000001 Rmu_sc0011109.1_g000007
rosa_samantha Rh1AG272800 Rh1BG240100 Rh1CG256700 Rh1DG268400
rosa_wichuraiana Rw1G024350

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 511
AatII GACGTC 1 cut(s) 246
AccB1I GGYRCC 1 cut(s) 535
AccBSI CCGCTC 1 cut(s) 150
AccI GTMKAC 1 cut(s) 515
AccII CGCG 2 cut(s) 132, 452
AcsI RAATTY 1 cut(s) 389
AcvI CACGTG 1 cut(s) 360
AcyI GRCGYC 2 cut(s) 243, 518
AfiI CCNNNNNNNGG 2 cut(s) 486, 561
AflIII ACRYGT 1 cut(s) 450
AjuI GAANNNNNNNTTGG 2 cut(s) 308, 340
AluBI AGCT 1 cut(s) 463
AluI AGCT 1 cut(s) 463
Alw21I GWGCWC 1 cut(s) 365
Alw26I GTCTC 2 cut(s) 139, 449
Ama87I CYCGRG 1 cut(s) 413
AoxI GGCC 2 cut(s) 49, 283
ApeKI GCWGC 3 cut(s) 126, 499, 523
ApoI RAATTY 1 cut(s) 389
AsuHPI GGTGA 1 cut(s) 64
AvaI CYCGRG 1 cut(s) 413
BanI GGYRCC 1 cut(s) 535
BbrPI CACGTG 1 cut(s) 360
Bbv12I GWGCWC 1 cut(s) 365
BbvCI CCTCAGC 1 cut(s) 401
BbvI GCAGC 3 cut(s) 113, 486, 510
BccI CCATC 3 cut(s) 77, 374, 561
BceAI ACGGC 1 cut(s) 484
BcgI CGANNNNNNTGC 4 cut(s) 208, 242, 505, 539
BcoDI GTCTC 2 cut(s) 139, 449
BfmI CTRYAG 1 cut(s) 524
BlpI GCTNAGC 1 cut(s) 542
BmeT110I CYCGRG 1 cut(s) 413
BmiI GGNNCC 2 cut(s) 472, 537
BmsI GCATC 5 cut(s) 213, 228, 340, 387, 399
Bpu10I CCTNAGC 1 cut(s) 401
Bpu1102I GCTNAGC 1 cut(s) 542
BpuEI CTTGAG 1 cut(s) 443
BsaAI YACGTR 1 cut(s) 360
BsaHI GRCGYC 2 cut(s) 243, 518
BsaJI CCNNGG 6 cut(s) 46, 52, 76, 198, 234, 330
BsaXI ACNNNNNCTCC 6 cut(s) 134, 164, 173, 179, 203, 209
Bsc4I CCNNNNNNNGG 2 cut(s) 486, 561
BseDI CCNNGG 6 cut(s) 46, 52, 76, 198, 234, 330
BseGI GGATG 2 cut(s) 207, 411
BseLI CCNNNNNNNGG 2 cut(s) 486, 561
BseMII CTCAG 2 cut(s) 392, 533
BseRI GAGGAG 6 cut(s) 7, 16, 95, 98, 181, 184
BseXI GCAGC 3 cut(s) 113, 486, 510
BseYI CCCAGC 1 cut(s) 153
Bsh1236I CGCG 2 cut(s) 132, 452
Bsh1285I CGRYCG 1 cut(s) 562
BshFI GGCC 2 cut(s) 51, 285
BshNI GGYRCC 1 cut(s) 535
BsiEI CGRYCG 1 cut(s) 562
BsiHKAI GWGCWC 1 cut(s) 365
BsiHKCI CYCGRG 1 cut(s) 413
BslI CCNNNNNNNGG 2 cut(s) 486, 561
BsmAI GTCTC 2 cut(s) 139, 449
BsmBI CGTCTC 1 cut(s) 139
BsnI GGCC 2 cut(s) 51, 285
BsoBI CYCGRG 1 cut(s) 413
Bsp1286I GDGCHC 1 cut(s) 365
Bsp143I GATC 1 cut(s) 559
Bsp1720I GCTNAGC 1 cut(s) 542
BspANI GGCC 2 cut(s) 51, 285
BspCNI CTCAG 2 cut(s) 393, 534
BspFNI CGCG 2 cut(s) 132, 452
BspLI GGNNCC 2 cut(s) 472, 537
BspMAI CTGCAG 1 cut(s) 528
BspT107I GGYRCC 1 cut(s) 535
BsrBI CCGCTC 1 cut(s) 150
BssECI CCNNGG 6 cut(s) 46, 52, 76, 198, 234, 330
BssMI GATC 1 cut(s) 559
BssNI GRCGYC 2 cut(s) 243, 518
BssT1I CCWWGG 2 cut(s) 76, 330
BstACI GRCGYC 2 cut(s) 243, 518
BstBAI YACGTR 1 cut(s) 360
BstC8I GCNNGC 2 cut(s) 548, 552
BstDEI CTNAG 2 cut(s) 401, 542
BstF5I GGATG 2 cut(s) 207, 411
BstFNI CGCG 2 cut(s) 132, 452
BstKTI GATC 1 cut(s) 562
BstMAI GTCTC 2 cut(s) 139, 449
BstMBI GATC 1 cut(s) 559
BstMCI CGRYCG 1 cut(s) 562
BstMWI GCNNNNNNNGC 6 cut(s) 138, 147, 369, 508, 517, 547
BstSFI CTRYAG 1 cut(s) 524
BstUI CGCG 2 cut(s) 132, 452
BstV1I GCAGC 3 cut(s) 113, 486, 510
BsuRI GGCC 2 cut(s) 51, 285
BtgZI GCGATG 1 cut(s) 363
BtsCI GGATG 2 cut(s) 207, 411
Cac8I GCNNGC 2 cut(s) 548, 552
CseI GACGC 3 cut(s) 121, 458, 526
DdeI CTNAG 2 cut(s) 401, 542
DpnI GATC 1 cut(s) 561
DpnII GATC 1 cut(s) 559
DrdI GACNNNNNNGTC 1 cut(s) 511
DseDI GACNNNNNNGTC 1 cut(s) 511
Eco130I CCWWGG 2 cut(s) 76, 330
Eco72I CACGTG 1 cut(s) 360
Eco88I CYCGRG 1 cut(s) 413
EcoRI GAATTC 1 cut(s) 389
EcoT14I CCWWGG 2 cut(s) 76, 330
ErhI CCWWGG 2 cut(s) 76, 330
Esp3I CGTCTC 1 cut(s) 139
FaiI YATR 2 cut(s) 65, 120
FalI AAGNNNNNCTT 2 cut(s) 308, 340
FauI CCCGC 2 cut(s) 146, 224
FblI GTMKAC 1 cut(s) 515
FokI GGATG 2 cut(s) 194, 418
GsaI CCCAGC 1 cut(s) 157
HaeIII GGCC 2 cut(s) 51, 285
HgaI GACGC 3 cut(s) 121, 458, 526
Hin1I GRCGYC 2 cut(s) 243, 518
HincII GTYRAC 1 cut(s) 516
HindII GTYRAC 1 cut(s) 516
HinfI GANTC 1 cut(s) 505
HphI GGTGA 1 cut(s) 64
Hpy166II GTNNAC 1 cut(s) 516
Hpy188I TCNGA 3 cut(s) 199, 489, 564
Hpy188III TCNNGA 3 cut(s) 247, 394, 446
Hpy8I GTNNAC 1 cut(s) 516
Hpy99I CGWCG 8 cut(s) 233, 245, 248, 266, 281, 284, 452, 520
HpyAV CCTTC 2 cut(s) 101, 334
HpyCH4IV ACGT 3 cut(s) 243, 297, 359
HpyCH4V TGCA 1 cut(s) 526
HpyF10VI GCNNNNNNNGC 6 cut(s) 138, 147, 369, 508, 517, 547
HpyF3I CTNAG 2 cut(s) 401, 542
HpySE526I ACGT 3 cut(s) 243, 297, 359
Hsp92I GRCGYC 2 cut(s) 243, 518
Kzo9I GATC 1 cut(s) 559
LmnI GCTCC 3 cut(s) 155, 368, 476
LpnPI CCDG 5 cut(s) 167, 305, 487, 512, 560
Lsp1109I GCAGC 3 cut(s) 113, 486, 510
LweI GCATC 5 cut(s) 213, 228, 340, 387, 399
MaeII ACGT 3 cut(s) 243, 297, 359
MalI GATC 1 cut(s) 561
MbiI CCGCTC 1 cut(s) 150
MboI GATC 1 cut(s) 559
MboII GAAGA 1 cut(s) 217
MhlI GDGCHC 1 cut(s) 365
MluCI AATT 2 cut(s) 31, 389
MluI ACGCGT 1 cut(s) 450
MlyI GAGTC 1 cut(s) 499
MmeI TCCRAC 1 cut(s) 467
MspA1I CMGCKG 4 cut(s) 499, 511, 523, 541
MvnI CGCG 2 cut(s) 132, 452
MwoI GCNNNNNNNGC 6 cut(s) 138, 147, 369, 508, 517, 547
NdeII GATC 1 cut(s) 559
NlaIV GGNNCC 2 cut(s) 472, 537
NmeAIII GCCGAG 3 cut(s) 27, 33, 259
PcsI WCGNNNNNNNCGW 3 cut(s) 237, 345, 500
PflFI GACNNNGTC 1 cut(s) 242
Ple19I CGATCG 1 cut(s) 562
PleI GAGTC 1 cut(s) 499
PmaCI CACGTG 1 cut(s) 360
PmlI CACGTG 1 cut(s) 360
PpsI GAGTC 1 cut(s) 499
Ppu21I YACGTR 1 cut(s) 360
PspCI CACGTG 1 cut(s) 360
PspFI CCCAGC 1 cut(s) 153
PspN4I GGNNCC 2 cut(s) 472, 537
PstI CTGCAG 1 cut(s) 528
PsyI GACNNNGTC 1 cut(s) 242
PvuI CGATCG 1 cut(s) 562
SalI GTCGAC 1 cut(s) 514
Sau3AI GATC 1 cut(s) 559
SchI GAGTC 1 cut(s) 499
SduI GDGCHC 1 cut(s) 365
SetI ASST 8 cut(s) 39, 246, 300, 362, 438, 465, 534, 578
SfaNI GCATC 5 cut(s) 213, 228, 340, 387, 399
SfcI CTRYAG 1 cut(s) 524
SmlI CTYRAG 1 cut(s) 458
SmoI CTYRAG 1 cut(s) 458
Sse9I AATT 2 cut(s) 31, 389
StyI CCWWGG 2 cut(s) 76, 330
TaiI ACGT 3 cut(s) 246, 300, 362
TaqI TCGA 4 cut(s) 246, 393, 447, 515
TasI AATT 2 cut(s) 31, 389
TauI GCSGC 8 cut(s) 132, 345, 348, 423, 499, 523, 541, 557
TseI GCWGC 3 cut(s) 126, 499, 523
TspGWI ACGGA 1 cut(s) 265
Tth111I GACNNNGTC 1 cut(s) 242
XapI RAATTY 1 cut(s) 389
XmiI GTMKAC 1 cut(s) 515
ZraI GACGTC 1 cut(s) 244
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.