Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0015360

Physical Location & Seq

Genomic Coordinates Forward (+)

22281279 .. 22282468

Gene Structure 1190 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G178600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 579 bp

ATGTCGTCCGCCCCAAACCCCACCCACCCCTCCACCCAAAATTACCTAACTACCCTCGGACTCGGCTACGGCATCGCCATTGCGCTCGGCTTCCTCGTCCTCTTCTCCACTCTCCTCCTGGCTTCCTACATCTGCTGCCGCGTCTCCCGCCACCACCACCACCCGCCTCCCAACCCGAACCGGAACCCGAACAACTCCGACGGCGTCATCCTCCCCCGAATCATCTTCGTCGCCGAGGACGACAACGACCAGCAGCAGCAAGACGATGAGAACGCCGTCGTCGGGATCCACCAGAGCGTCATCAACTCCTACCCCAAGTTCCCCTTCTCCAAGGAAGTGGCGGCCGCCGATTCGTCCACGTGCTCCATCTGCTTGTGCGACTACAAGGACGCCGAGATGCTCCGGATGATGCCCGAGTGCAGGCACTACTTTCACCTGATGTGCCTCGACGCGTGGCTCAAGCTCAACGGGTCGTGCCCGGTTTGCCGGAACTCTCCGTTGCCGACGCCCCTGTCGACTCCGTTGCAGGAGGTCGTGCCTTTGTCTCAGTACCCGGCCGATCGGAGATGGAGGAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

193

Amino Acids

21.52

Weight (kDa)

6.42

Isoelectric Point (pI)

63.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015360)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46160 AT2G46160
fragaria_vesca	FvH4_7g15500
malus_domestica	MD01G1072300.v1.1
prunus_persica	Prupe.2G178600_v2.0.a1
pyrus_communis	pycom01g10150 pycom07g12760
rosa_chinensis	RchiOBHm_Chr1g0357831
rosa_laevigata	RLG00000027993
rosa_multiflora	Rmu_sc0002071.1_g000001 Rmu_sc0011109.1_g000007
rosa_samantha	Rh1AG272800 Rh1BG240100 Rh1CG256700 Rh1DG268400
rosa_wichuraiana	Rw1G024350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	511
AccI	GTMKAC	1 cut(s)	515
AccII	CGCG	2 cut(s)	141, 452
AccIII	TCCGGA	1 cut(s)	402
AciI	CCGC	6 cut(s)	9, 139, 148, 164, 341, 345
AclWI	GGATC	2 cut(s)	280, 293
AcoI	YGGCCR	2 cut(s)	342, 555
AcvI	CACGTG	1 cut(s)	360
AcyI	GRCGYC	3 cut(s)	204, 390, 506
AfaI	GTAC	1 cut(s)	551
AfiI	CCNNNNNNNGG	2 cut(s)	282, 420
AflIII	ACRYGT	1 cut(s)	450
AjnI	CCWGG	1 cut(s)	117
AjuI	GAANNNNNNNTTGG	2 cut(s)	308, 340
AluBI	AGCT	1 cut(s)	463
AluI	AGCT	1 cut(s)	463
Alw21I	GWGCWC	1 cut(s)	365
Alw26I	GTCTC	2 cut(s)	148, 549
AlwI	GGATC	2 cut(s)	280, 293
Ama87I	CYCGRG	1 cut(s)	413
Aor13HI	TCCGGA	1 cut(s)	402
AoxI	GGCC	2 cut(s)	342, 555
ApeKI	GCWGC	3 cut(s)	135, 253, 256
AspLEI	GCGC	1 cut(s)	85
AsuC2I	CCSGG	2 cut(s)	479, 554
AsuHPI	GGTGA	1 cut(s)	425
AvaI	CYCGRG	1 cut(s)	413
BaeGI	GKGCMC	1 cut(s)	479
BamHI	GGATCC	1 cut(s)	285
BbrPI	CACGTG	1 cut(s)	360
Bbv12I	GWGCWC	1 cut(s)	365
BbvI	GCAGC	3 cut(s)	122, 265, 268
BccI	CCATC	2 cut(s)	374, 561
BceAI	ACGGC	3 cut(s)	85, 217, 260
BcgI	CGANNNNNNTGC	2 cut(s)	505, 539
BciT130I	CCWGG	1 cut(s)	119
BcnI	CCSGG	2 cut(s)	479, 554
BcoDI	GTCTC	2 cut(s)	148, 549
BisI	GCNGC	6 cut(s)	136, 139, 254, 257, 342, 345
BlsI	GCNGC	6 cut(s)	137, 140, 255, 258, 343, 346
Bme1390I	CCNGG	3 cut(s)	119, 479, 554
BmeT110I	CYCGRG	1 cut(s)	413
BmiI	GGNNCC	2 cut(s)	185, 287
BmrFI	CCNGG	3 cut(s)	119, 479, 554
BmsI	GCATC	3 cut(s)	81, 387, 399
BpuEI	CTTGAG	1 cut(s)	443
BpuMI	CCSGG	2 cut(s)	479, 554
BsaAI	YACGTR	1 cut(s)	360
BsaHI	GRCGYC	3 cut(s)	204, 390, 506
BsaJI	CCNNGG	3 cut(s)	55, 234, 330
BsaWI	WCCGGW	2 cut(s)	180, 402
Bsc4I	CCNNNNNNNGG	2 cut(s)	282, 420
Bse3DI	GCAATG	1 cut(s)	78
BseAI	TCCGGA	1 cut(s)	402
BseBI	CCWGG	1 cut(s)	119
BseDI	CCNNGG	3 cut(s)	55, 234, 330
BseGI	GGATG	2 cut(s)	207, 411
BseLI	CCNNNNNNNGG	2 cut(s)	282, 420
BseMI	GCAATG	1 cut(s)	78
BseMII	CTCAG	1 cut(s)	560
BseRI	GAGGAG	1 cut(s)	104
BseSI	GKGCMC	1 cut(s)	479
BseX3I	CGGCCG	2 cut(s)	342, 555
BseXI	GCAGC	3 cut(s)	122, 265, 268
BsgI	GTGCAG	1 cut(s)	439
Bsh1236I	CGCG	2 cut(s)	141, 452
Bsh1285I	CGRYCG	3 cut(s)	345, 558, 562
BshFI	GGCC	2 cut(s)	344, 557
BsiEI	CGRYCG	3 cut(s)	345, 558, 562
BsiHKAI	GWGCWC	1 cut(s)	365
BsiHKCI	CYCGRG	1 cut(s)	413
BsiSI	CCGG	5 cut(s)	181, 403, 479, 487, 554
BslI	CCNNNNNNNGG	2 cut(s)	282, 420
BsmAI	GTCTC	2 cut(s)	148, 549
BsmBI	CGTCTC	1 cut(s)	148
BsnI	GGCC	2 cut(s)	344, 557
BsoBI	CYCGRG	1 cut(s)	413
Bsp1286I	GDGCHC	2 cut(s)	365, 479
Bsp13I	TCCGGA	1 cut(s)	402
Bsp143I	GATC	2 cut(s)	285, 559
BspACI	CCGC	6 cut(s)	9, 139, 148, 164, 341, 345
BspANI	GGCC	2 cut(s)	344, 557
BspCNI	CTCAG	1 cut(s)	559
BspEI	TCCGGA	1 cut(s)	402
BspFNI	CGCG	2 cut(s)	141, 452
BspLI	GGNNCC	2 cut(s)	185, 287
BspPI	GGATC	2 cut(s)	280, 293
BsrDI	GCAATG	1 cut(s)	78
BssECI	CCNNGG	3 cut(s)	55, 234, 330
BssMI	GATC	2 cut(s)	285, 559
BssNI	GRCGYC	3 cut(s)	204, 390, 506
BssT1I	CCWWGG	1 cut(s)	330
Bst2UI	CCWGG	1 cut(s)	119
Bst6I	CTCTTC	1 cut(s)	107
BstACI	GRCGYC	3 cut(s)	204, 390, 506
BstBAI	YACGTR	1 cut(s)	360
BstC8I	GCNNGC	1 cut(s)	422
BstDEI	CTNAG	1 cut(s)	546
BstF5I	GGATG	2 cut(s)	207, 411
BstFNI	CGCG	2 cut(s)	141, 452
BstHHI	GCGC	1 cut(s)	85
BstKTI	GATC	2 cut(s)	288, 562
BstMAI	GTCTC	2 cut(s)	148, 549
BstMBI	GATC	2 cut(s)	285, 559
BstMCI	CGRYCG	3 cut(s)	345, 558, 562
BstMWI	GCNNNNNNNGC	3 cut(s)	147, 369, 483
BstNI	CCWGG	1 cut(s)	119
BstSCI	CCNGG	3 cut(s)	117, 477, 552
BstSLI	GKGCMC	1 cut(s)	479
BstUI	CGCG	2 cut(s)	141, 452
BstV1I	GCAGC	3 cut(s)	122, 265, 268
BstX2I	RGATCY	1 cut(s)	285
BstXI	CCANNNNNNTGG	1 cut(s)	337
BstYI	RGATCY	1 cut(s)	285
BstZI	CGGCCG	2 cut(s)	342, 555
BsuRI	GGCC	2 cut(s)	344, 557
BtgZI	GCGATG	1 cut(s)	58
BtsCI	GGATG	2 cut(s)	207, 411
Cac8I	GCNNGC	1 cut(s)	422
CciNI	GCGGCCGC	1 cut(s)	342
CfoI	GCGC	1 cut(s)	85
CseI	GACGC	6 cut(s)	130, 193, 286, 398, 458, 514
Csp6I	GTAC	1 cut(s)	550
CviJI	RGCY	7 cut(s)	66, 90, 122, 344, 457, 463, 557
CviKI_1	RGCY	7 cut(s)	66, 90, 122, 344, 457, 463, 557
CviQI	GTAC	1 cut(s)	550
DdeI	CTNAG	1 cut(s)	546
DpnI	GATC	2 cut(s)	287, 561
DpnII	GATC	2 cut(s)	285, 559
DrdI	GACNNNNNNGTC	1 cut(s)	511
DseDI	GACNNNNNNGTC	1 cut(s)	511
EaeI	YGGCCR	2 cut(s)	342, 555
EagI	CGGCCG	2 cut(s)	342, 555
Eam1104I	CTCTTC	1 cut(s)	107
EarI	CTCTTC	1 cut(s)	107
EclXI	CGGCCG	2 cut(s)	342, 555
Eco130I	CCWWGG	1 cut(s)	330
Eco52I	CGGCCG	2 cut(s)	342, 555
Eco72I	CACGTG	1 cut(s)	360
Eco88I	CYCGRG	1 cut(s)	413
EcoRII	CCWGG	1 cut(s)	117
EcoT14I	CCWWGG	1 cut(s)	330
ErhI	CCWWGG	1 cut(s)	330
Esp3I	CGTCTC	1 cut(s)	148
FalI	AAGNNNNNCTT	2 cut(s)	308, 340
FauI	CCCGC	2 cut(s)	155, 171
FblI	GTMKAC	1 cut(s)	515
Fnu4HI	GCNGC	6 cut(s)	136, 139, 254, 257, 342, 345
FokI	GGATG	2 cut(s)	194, 418
Fsp4HI	GCNGC	6 cut(s)	136, 139, 254, 257, 342, 345
GlaI	GCGC	1 cut(s)	84
GluI	GCNGC	6 cut(s)	136, 139, 254, 257, 342, 345
HaeIII	GGCC	2 cut(s)	344, 557
HapII	CCGG	5 cut(s)	181, 403, 479, 487, 554
HgaI	GACGC	6 cut(s)	130, 193, 286, 398, 458, 514
HhaI	GCGC	1 cut(s)	85
Hin1I	GRCGYC	3 cut(s)	204, 390, 506
Hin6I	GCGC	1 cut(s)	83
HinP1I	GCGC	1 cut(s)	83
HincII	GTYRAC	1 cut(s)	516
HindII	GTYRAC	1 cut(s)	516
HinfI	GANTC	4 cut(s)	60, 219, 350, 517
HpaII	CCGG	5 cut(s)	181, 403, 479, 487, 554
HphI	GGTGA	1 cut(s)	425
Hpy166II	GTNNAC	2 cut(s)	357, 516
Hpy188I	TCNGA	3 cut(s)	59, 199, 564
Hpy188III	TCNNGA	2 cut(s)	283, 403
Hpy8I	GTNNAC	2 cut(s)	357, 516
Hpy99I	CGWCG	6 cut(s)	203, 233, 281, 284, 452, 508
HpyAV	CCTTC	1 cut(s)	334
HpyCH4IV	ACGT	1 cut(s)	359
HpyCH4V	TGCA	2 cut(s)	420, 526
HpyF10VI	GCNNNNNNNGC	3 cut(s)	147, 369, 483
HpyF3I	CTNAG	1 cut(s)	546
HpySE526I	ACGT	1 cut(s)	359
Hsp92I	GRCGYC	3 cut(s)	204, 390, 506
HspAI	GCGC	1 cut(s)	83
Kpn2I	TCCGGA	1 cut(s)	402
Kzo9I	GATC	2 cut(s)	285, 559
LmnI	GCTCC	2 cut(s)	368, 405
Lsp1109I	GCAGC	3 cut(s)	122, 265, 268
LweI	GCATC	3 cut(s)	81, 387, 399
MaeII	ACGT	1 cut(s)	359
MalI	GATC	2 cut(s)	287, 561
MboI	GATC	2 cut(s)	285, 559
MboII	GAAGA	2 cut(s)	94, 217
MflI	RGATCY	1 cut(s)	285
MhlI	GDGCHC	2 cut(s)	365, 479
MluCI	AATT	1 cut(s)	40
MluI	ACGCGT	1 cut(s)	450
MlyI	GAGTC	2 cut(s)	54, 511
MmeI	TCCRAC	1 cut(s)	222
MroI	TCCGGA	1 cut(s)	402
MspI	CCGG	5 cut(s)	181, 403, 479, 487, 554
MspR9I	CCNGG	3 cut(s)	119, 479, 554
MvaI	CCWGG	1 cut(s)	119
MvnI	CGCG	2 cut(s)	141, 452
MwoI	GCNNNNNNNGC	3 cut(s)	147, 369, 483
NciI	CCSGG	2 cut(s)	479, 554
NdeII	GATC	2 cut(s)	285, 559
NlaIV	GGNNCC	2 cut(s)	185, 287
NmeAIII	GCCGAG	4 cut(s)	42, 66, 259, 418
NotI	GCGGCCGC	1 cut(s)	342
PcsI	WCGNNNNNNNCGW	3 cut(s)	93, 237, 512
PfeI	GAWTC	2 cut(s)	219, 350
PflFI	GACNNNGTC	1 cut(s)	203
PkrI	GCNGC	6 cut(s)	137, 140, 255, 258, 343, 346
Ple19I	CGATCG	1 cut(s)	562
PleI	GAGTC	2 cut(s)	54, 511
PmaCI	CACGTG	1 cut(s)	360
PmlI	CACGTG	1 cut(s)	360
PpsI	GAGTC	2 cut(s)	54, 511
Ppu21I	YACGTR	1 cut(s)	360
Psp6I	CCWGG	1 cut(s)	117
PspCI	CACGTG	1 cut(s)	360
PspGI	CCWGG	1 cut(s)	117
PspN4I	GGNNCC	2 cut(s)	185, 287
PsuI	RGATCY	1 cut(s)	285
PsyI	GACNNNGTC	1 cut(s)	203
PvuI	CGATCG	1 cut(s)	562
RsaI	GTAC	1 cut(s)	551
RsaNI	GTAC	1 cut(s)	550
SalI	GTCGAC	1 cut(s)	514
SatI	GCNGC	6 cut(s)	136, 139, 254, 257, 342, 345
Sau3AI	GATC	2 cut(s)	285, 559
SchI	GAGTC	2 cut(s)	54, 511
ScrFI	CCNGG	3 cut(s)	119, 479, 554
SduI	GDGCHC	2 cut(s)	365, 479
SetI	ASST	6 cut(s)	48, 362, 438, 465, 534, 578
SfaNI	GCATC	3 cut(s)	81, 387, 399
SmlI	CTYRAG	1 cut(s)	458
SmoI	CTYRAG	1 cut(s)	458
Sse9I	AATT	1 cut(s)	40
SsiI	CCGC	6 cut(s)	9, 139, 148, 164, 341, 345
StyD4I	CCNGG	3 cut(s)	117, 477, 552
StyI	CCWWGG	1 cut(s)	330
TaiI	ACGT	1 cut(s)	362
TaqI	TCGA	2 cut(s)	447, 515
TasI	AATT	1 cut(s)	40
TauI	GCSGC	3 cut(s)	141, 344, 347
TfiI	GAWTC	2 cut(s)	219, 350
TseI	GCWGC	3 cut(s)	135, 253, 256
TspGWI	ACGGA	2 cut(s)	486, 510
Tth111I	GACNNNGTC	1 cut(s)	203
XcmI	CCANNNNNNNNNTGG	1 cut(s)	115
XmiI	GTMKAC	1 cut(s)	515

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.